National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                               1   1  
C     18                                      
D     6     1                               1
E 1   24       1                              
F     30                                      
G     12                                      
H     9                                     1
I     25                       1           1  
K     21                                      
L     45         1         6                  
M     6                                      
N     6                                      
P     18                   3           2      
Q     15                                      
R     15               2 1                    
S     21                         1            
T     30               2                 2    
V     24                                   1  
Y     15                                     2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Ireland 27394 A 1968 1968
1 Ireland 27395 T 1968 1968
2 Ireland 27396 G 1968 1968
3 Ireland 27397 A 1968 1968
4 Ireland 27398 A 1968 1968
5 Ireland 27399 A 1968 1968
6 Ireland 27400 A 1968 1968
7 Ireland 27401 T 1968 1968
8 Ireland 27402 T 1968 1968
9 Ireland 27403 A 1968 1968
10 Ireland 27404 T A 1968 1967 Ile4Asn
11 Ireland 27405 T 1968 1968
12 Ireland 27406 C 1968 1968
13 Ireland 27407 T 1968 1968
14 Ireland 27408 T 1968 1968
15 Ireland 27409 T 1968 1968
16 Ireland 27410 T 1968 1968
17 Ireland 27411 C 1968 1968
18 Ireland 27412 T 1968 1968
19 Ireland 27413 T 1968 1968
20 Ireland 27414 G 1968 1968
21 Ireland 27415 G 1968 1968
22 Ireland 27416 C 1968 1968
23 Ireland 27417 A 1968 1968
24 Ireland 27418 C 1968 1968
25 Ireland 27419 T 1968 1968
26 Ireland 27420 G 1968 1968
27 Ireland 27421 A 1968 1968
28 Ireland 27422 T 1968 1968
29 Ireland 27423 A 1968 1968
30 Ireland 27424 A 1968 1968
31 Ireland 27425 C 1968 1968
32 Ireland 27426 A 1968 1968
33 Ireland 27427 C 1968 1968
34 Ireland 27428 T 1968 1968
35 Ireland 27429 C 1968 1968
36 Ireland 27430 G 1968 1968
37 Ireland 27431 C 1968 1968
38 Ireland 27432 T 1968 1968
39 Ireland 27433 A 1968 1968
40 Ireland 27434 C 1968 1968
41 Ireland 27435 T 1968 1968
42 Ireland 27436 T 1968 1968
43 Ireland 27437 G 1968 1968
44 Ireland 27438 T 1968 1968
45 Ireland 27439 G 1968 1968
46 Ireland 27440 A 1968 1968
47 Ireland 27441 G 1968 1968
48 Ireland 27442 C T 1968 1967 Leu17Phe
49 Ireland 27443 T 1968 1968
50 Ireland 27444 T 1968 1968
51 Ireland 27445 T 1968 1968
52 Ireland 27446 A 1968 1968
53 Ireland 27447 T 1968 1968
54 Ireland 27448 C 1968 1968
55 Ireland 27449 A 1968 1968
56 Ireland 27450 C 1968 1968
57 Ireland 27451 T 1968 1968
58 Ireland 27452 A 1968 1968
59 Ireland 27453 C 1968 1968
60 Ireland 27454 C 1968 1968
61 Ireland 27455 A 1968 1968
62 Ireland 27456 A 1968 1968
63 Ireland 27457 G 1968 1968
64 Ireland 27458 A 1968 1968
65 Ireland 27459 G 1968 1968
66 Ireland 27460 T 1968 1968
67 Ireland 27461 G 1968 1968
68 Ireland 27462 T 1968 1968
69 Ireland 27463 G 1968 1968
70 Ireland 27464 T 1968 1968
71 Ireland 27465 T 1968 1968
72 Ireland 27466 A 1968 1968
73 Ireland 27467 G A 1968 1967 Arg25Lys
74 Ireland 27468 A 1968 1968
75 Ireland 27469 G 1968 1968
76 Ireland 27470 G 1968 1968
77 Ireland 27471 T 1968 1968
78 Ireland 27472 A 1969 1969
79 Ireland 27473 C 1969 1969
80 Ireland 27474 A 1969 1969
81 Ireland 27475 A 1969 1969
82 Ireland 27476 C T 1969 1968 Thr28Ile
83 Ireland 27477 A T 1969 1968 Thr28Thr
84 Ireland 27478 G 1969 1969
85 Ireland 27479 T 1969 1969
86 Ireland 27480 A T 1969 1968 Val29Val
87 Ireland 27481 C 1969 1969
88 Ireland 27482 T 1969 1969
89 Ireland 27483 T C 1969 1968 Leu30Leu
90 Ireland 27484 T C 1969 1967 Leu31Leu
91 Ireland 27485 T 1969 1969
92 Ireland 27486 A 1969 1969
93 Ireland 27487 A 1969 1969
94 Ireland 27488 A 1969 1969
95 Ireland 27489 A 1969 1969
96 Ireland 27490 G 1969 1969
97 Ireland 27491 A 1969 1969
98 Ireland 27492 A 1969 1969
99 Ireland 27493 C 1969 1969
100 Ireland 27494 C T 1969 1963 Pro34Leu
101 Ireland 27495 T 1969 1969
102 Ireland 27496 T 1969 1969
103 Ireland 27497 G 1969 1969
104 Ireland 27498 C 1969 1969
105 Ireland 27499 T 1969 1969
106 Ireland 27500 C 1969 1969
107 Ireland 27501 T 1969 1969
108 Ireland 27502 T 1969 1969
109 Ireland 27503 C 1969 1969
110 Ireland 27504 T 1968 1968
111 Ireland 27505 G 1968 1968
112 Ireland 27506 G 1968 1968
113 Ireland 27507 A 1968 1968
114 Ireland 27508 A 1968 1968
115 Ireland 27509 C 1968 1966
116 Ireland 27510 A 1968 1968
117 Ireland 27511 T 1968 1968
118 Ireland 27512 A 1698 1675
119 Ireland 27513 C T 1698 1673 Tyr40Tyr
120 Ireland 27514 G 1698 1675
121 Ireland 27515 A 1698 1675
122 Ireland 27516 G 1698 1675
123 Ireland 27517 G 1698 1677
124 Ireland 27518 G 1698 1677
125 Ireland 27519 C 1698 1677
126 Ireland 27520 A 1698 1677
127 Ireland 27521 A 1698 1677
128 Ireland 27522 T 1698 1677
129 Ireland 27523 T 1698 1677
130 Ireland 27524 C 1698 1677
131 Ireland 27525 A 1698 1677
132 Ireland 27526 C 1698 1677
133 Ireland 27527 C T 1698 1676 Pro45Leu
134 Ireland 27528 A 1698 1677
135 Ireland 27529 T 1698 1677
136 Ireland 27530 T 1698 1678
137 Ireland 27531 T 1698 1678
138 Ireland 27532 C T 1698 1676 His47Tyr
139 Ireland 27533 A 1698 1678
140 Ireland 27534 T 1697 1689
141 Ireland 27535 C 1651 1643
142 Ireland 27536 C 1618 1610
143 Ireland 27537 T 1606 1598
144 Ireland 27538 C 1599 1592
145 Ireland 27539 T 1591 1582
146 Ireland 27540 A 1590 1582
147 Ireland 27541 G T 1589 1576 Ala50Ser
148 Ireland 27542 C 1589 1580
149 Ireland 27543 T 1589 1582
150 Ireland 27544 G T 1588 1577 Asp51Tyr
151 Ireland 27545 A 1588 1580
152 Ireland 27546 T 1588 1581
153 Ireland 27547 A 1588 1581
154 Ireland 27548 A 1588 1582
155 Ireland 27549 C 1588 1583
156 Ireland 27550 A 1588 1583
157 Ireland 27551 A 1588 1583
158 Ireland 27552 A 1588 1584
159 Ireland 27553 T 1588 1583
160 Ireland 27554 T 1588 1583
161 Ireland 27555 T 1585 1580
162 Ireland 27556 G 1585 1580
163 Ireland 27557 C 1584 1579
164 Ireland 27558 A 1583 1578
165 Ireland 27559 C T 1583 1575 Leu56Leu
166 Ireland 27560 T 1583 1579
167 Ireland 27561 G 1583 1579
168 Ireland 27562 A 1583 1580
169 Ireland 27563 C 1583 1580
170 Ireland 27564 T 1583 1579
171 Ireland 27565 T 1583 1579
172 Ireland 27566 G 1583 1580
173 Ireland 27567 C 1583 1580
174 Ireland 27568 T 1583 1580
175 Ireland 27569 T 1583 1580
176 Ireland 27570 T 1583 1581
177 Ireland 27571 A 1583 1581
178 Ireland 27572 G 1582 1579
179 Ireland 27573 C 1582 1579
180 Ireland 27574 A 1581 1578
181 Ireland 27575 C 1581 1578
182 Ireland 27576 T C 1581 1576 Thr61Thr
183 Ireland 27577 C 1581 1578
184 Ireland 27578 A 1582 1580
185 Ireland 27579 A 1582 1580
186 Ireland 27580 T 1582 1580
187 Ireland 27581 T 1582 1580
188 Ireland 27582 T 1582 1580
189 Ireland 27583 G 1582 1578
190 Ireland 27584 C 1582 1580
191 Ireland 27585 T 1583 1582
192 Ireland 27586 T 1583 1583
193 Ireland 27587 T 1583 1583
194 Ireland 27588 T 1583 1583
195 Ireland 27589 G 1583 1583
196 Ireland 27590 C 1583 1583
197 Ireland 27591 T 1583 1583
198 Ireland 27592 T 1583 1583
199 Ireland 27593 G 1583 1583
200 Ireland 27594 T 1583 1582
201 Ireland 27595 C T 1583 1582 Pro68Ser
202 Ireland 27596 C 1583 1583
203 Ireland 27597 T 1583 1582
204 Ireland 27598 G 1583 1582
205 Ireland 27599 A 1583 1582
206 Ireland 27600 C T 1583 1581 Asp69Asp
207 Ireland 27601 G 1583 1582
208 Ireland 27602 G 1583 1582
209 Ireland 27603 C 1583 1582
210 Ireland 27604 G 1583 1582
211 Ireland 27605 T 1583 1583
212 Ireland 27606 A 1583 1583
213 Ireland 27607 A 1583 1583
214 Ireland 27608 A 1583 1582
215 Ireland 27609 A 1583 1582
216 Ireland 27610 C 1583 1582
217 Ireland 27611 A 1583 1582
218 Ireland 27612 C 1583 1581
219 Ireland 27613 G 1583 1582
220 Ireland 27614 T 1582 1581
221 Ireland 27615 C 1582 1581
222 Ireland 27616 T 1582 1581
223 Ireland 27617 A 1582 1581
224 Ireland 27618 T 1582 1581
225 Ireland 27619 C 1582 1581
226 Ireland 27620 A 1582 1582
227 Ireland 27621 G 1582 1581
228 Ireland 27622 T C 1582 1581 Leu77Leu
229 Ireland 27623 T 1582 1582
230 Ireland 27624 A 1582 1582
231 Ireland 27625 C 1582 1582
232 Ireland 27626 G 1582 1582
233 Ireland 27627 T 1582 1582
234 Ireland 27628 G 1582 1582
235 Ireland 27629 C 1582 1581
236 Ireland 27630 C 1582 1581
237 Ireland 27631 A 1582 1581
238 Ireland 27632 G T 1582 1567 Arg80Ile
239 Ireland 27633 A 1582 1581
240 Ireland 27634 T C 1582 1580 Ser81Pro
241 Ireland 27635 C 1582 1581
242 Ireland 27636 A 1582 1582
243 Ireland 27637 G 1582 1582
244 Ireland 27638 T 1582 1582
245 Ireland 27639 T 1582 1582
246 Ireland 27640 T 1582 1582
247 Ireland 27641 C 1582 1582
248 Ireland 27642 A 1582 1582
249 Ireland 27643 C T 1582 1581 Pro84Ser
250 Ireland 27644 C 1582 1582
251 Ireland 27645 T 1582 1582
252 Ireland 27646 A 1582 1582
253 Ireland 27647 A 1582 1582
254 Ireland 27648 A 1582 1582
255 Ireland 27649 C T 1582 1580 Leu86Leu
256 Ireland 27650 T 1582 1582
257 Ireland 27651 G 1582 1582
258 Ireland 27652 T 1582 1582
259 Ireland 27653 T 1582 1582
260 Ireland 27654 C 1582 1582
261 Ireland 27655 A G 1581 1578 Ile88Val
262 Ireland 27656 T 1581 1581
263 Ireland 27657 C 1581 1581
264 Ireland 27658 A 1581 1581
265 Ireland 27659 G 1581 1581
266 Ireland 27660 A 1581 1581
267 Ireland 27661 C 1581 1581
268 Ireland 27662 A 1581 1581
269 Ireland 27663 A 1581 1581
270 Ireland 27664 G 1581 1581
271 Ireland 27665 A 1581 1581
272 Ireland 27666 G 1581 1581
273 Ireland 27667 G 1581 1581
274 Ireland 27668 A 1581 1581
275 Ireland 27669 A G 1581 1580 Glu92Glu
276 Ireland 27670 G 1581 1581
277 Ireland 27671 T 1581 1581
278 Ireland 27672 T 1581 1581
279 Ireland 27673 C 1581 1581
280 Ireland 27674 A 1581 1581
281 Ireland 27675 A 1581 1581
282 Ireland 27676 G 1581 1581
283 Ireland 27677 A 1581 1581
284 Ireland 27678 A 1581 1581
285 Ireland 27679 C 1581 1581
286 Ireland 27680 T 1581 1581
287 Ireland 27681 T 1580 1580
288 Ireland 27682 T 1580 1580
289 Ireland 27683 A 1580 1580
290 Ireland 27684 C T 1580 1578 Tyr97Tyr
291 Ireland 27685 T 1580 1580
292 Ireland 27686 C 1580 1580
293 Ireland 27687 T 1580 1580
294 Ireland 27688 C 1580 1580
295 Ireland 27689 C T 1580 1579 Pro99Leu
296 Ireland 27690 A 1580 1579
297 Ireland 27691 A 1580 1579
298 Ireland 27692 T 1580 1579
299 Ireland 27693 T 1580 1578
300 Ireland 27694 T 1579 1578
301 Ireland 27695 T 1579 1578
302 Ireland 27696 T 1577 1577
303 Ireland 27697 C 1577 1577
304 Ireland 27698 T 1577 1577
305 Ireland 27699 T 1577 1577
306 Ireland 27700 A 1577 1577
307 Ireland 27701 T 1577 1577
308 Ireland 27702 T 1577 1577
309 Ireland 27703 G 1577 1577
310 Ireland 27704 T 1577 1577
311 Ireland 27705 T 1577 1577
312 Ireland 27706 G 1577 1577
313 Ireland 27707 C T 1577 1575 Ala105Val
314 Ireland 27708 G 1577 1577
315 Ireland 27709 G 1577 1577
316 Ireland 27710 C 1577 1577
317 Ireland 27711 A 1577 1577
318 Ireland 27712 A 1577 1577
319 Ireland 27713 T 1577 1577
320 Ireland 27714 A 1577 1577
321 Ireland 27715 G 1577 1577
322 Ireland 27716 T 1577 1577
323 Ireland 27717 G 1577 1577
324 Ireland 27718 T 1577 1577
325 Ireland 27719 T 1577 1577
326 Ireland 27720 T 1577 1577
327 Ireland 27721 A 1577 1577
328 Ireland 27722 T 1577 1577
329 Ireland 27723 A 1577 1576
330 Ireland 27724 A 1577 1576
331 Ireland 27725 C 1577 1577
332 Ireland 27726 A 1577 1577
333 Ireland 27727 C 1577 1577
334 Ireland 27728 T 1577 1577
335 Ireland 27729 T 1577 1577
336 Ireland 27730 T 1577 1577
337 Ireland 27731 G 1576 1576
338 Ireland 27732 C 1576 1576
339 Ireland 27733 T 1576 1576
340 Ireland 27734 T 1576 1576
341 Ireland 27735 C 1576 1576
342 Ireland 27736 A 1575 1575
343 Ireland 27737 C 1575 1575
344 Ireland 27738 A 1574 1574
345 Ireland 27739 C 1574 1574
346 Ireland 27740 T 1574 1574
347 Ireland 27741 C T 1574 1572 Leu116Leu
348 Ireland 27742 A 1574 1574
349 Ireland 27743 A 1574 1574
350 Ireland 27744 A 1574 1574
351 Ireland 27745 A 1574 1574
352 Ireland 27746 G T 1574 1569 Arg118Ile
353 Ireland 27747 A 1574 1574
354 Ireland 27748 A 1574 1574
355 Ireland 27749 A 1574 1574
356 Ireland 27750 G 1565 1565
357 Ireland 27751 A 1565 1565
358 Ireland 27752 C T 1564 1553 Thr120Ile
359 Ireland 27753 A 1564 1564
360 Ireland 27754 G T 1564 1563 Glu121*
361 Ireland 27755 A 1563 1563
362 Ireland 27756 A 1563 1563
363 Ireland 27757 T 1563 1563
364 Ireland 27758 G 1561 1561
365 Ireland 27759 A 1561 1561