National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Iraq 27394 A 32 32
1 Iraq 27395 T 32 32
2 Iraq 27396 G 32 32
3 Iraq 27397 A 32 32
4 Iraq 27398 A 32 32
5 Iraq 27399 A 32 32
6 Iraq 27400 A 32 32
7 Iraq 27401 T 32 32
8 Iraq 27402 T 32 32
9 Iraq 27403 A 32 32
10 Iraq 27404 T 32 32
11 Iraq 27405 T 32 32
12 Iraq 27406 C 32 32
13 Iraq 27407 T 32 32
14 Iraq 27408 T 32 32
15 Iraq 27409 T 32 32
16 Iraq 27410 T 32 32
17 Iraq 27411 C 32 32
18 Iraq 27412 T 32 32
19 Iraq 27413 T 32 32
20 Iraq 27414 G 32 32
21 Iraq 27415 G 32 32
22 Iraq 27416 C 32 32
23 Iraq 27417 A 32 32
24 Iraq 27418 C 32 32
25 Iraq 27419 T 32 32
26 Iraq 27420 G 32 32
27 Iraq 27421 A 32 32
28 Iraq 27422 T 32 32
29 Iraq 27423 A 32 32
30 Iraq 27424 A 32 32
31 Iraq 27425 C 32 32
32 Iraq 27426 A 32 32
33 Iraq 27427 C 32 32
34 Iraq 27428 T 32 32
35 Iraq 27429 C 32 32
36 Iraq 27430 G 32 32
37 Iraq 27431 C 32 32
38 Iraq 27432 T 32 32
39 Iraq 27433 A 32 32
40 Iraq 27434 C 32 32
41 Iraq 27435 T 32 32
42 Iraq 27436 T 32 32
43 Iraq 27437 G 32 32
44 Iraq 27438 T 32 32
45 Iraq 27439 G 32 32
46 Iraq 27440 A 32 32
47 Iraq 27441 G 32 32
48 Iraq 27442 C 32 32
49 Iraq 27443 T 32 32
50 Iraq 27444 T 32 32
51 Iraq 27445 T 32 32
52 Iraq 27446 A 32 32
53 Iraq 27447 T 32 32
54 Iraq 27448 C 32 32
55 Iraq 27449 A 32 32
56 Iraq 27450 C 32 32
57 Iraq 27451 T 32 32
58 Iraq 27452 A 32 32
59 Iraq 27453 C 32 32
60 Iraq 27454 C 32 32
61 Iraq 27455 A 32 32
62 Iraq 27456 A 32 32
63 Iraq 27457 G 32 32
64 Iraq 27458 A 32 32
65 Iraq 27459 G 32 32
66 Iraq 27460 T 32 32
67 Iraq 27461 G 32 32
68 Iraq 27462 T 32 32
69 Iraq 27463 G 32 32
70 Iraq 27464 T 32 32
71 Iraq 27465 T 32 32
72 Iraq 27466 A 32 32
73 Iraq 27467 G 32 32
74 Iraq 27468 A 32 32
75 Iraq 27469 G 32 32
76 Iraq 27470 G 32 32
77 Iraq 27471 T 32 32
78 Iraq 27472 A 32 32
79 Iraq 27473 C 32 32
80 Iraq 27474 A 32 32
81 Iraq 27475 A 32 32
82 Iraq 27476 C 32 32
83 Iraq 27477 A 32 32
84 Iraq 27478 G 32 32
85 Iraq 27479 T 32 32
86 Iraq 27480 A 32 32
87 Iraq 27481 C 32 32
88 Iraq 27482 T 32 32
89 Iraq 27483 T 32 32
90 Iraq 27484 T 32 32
91 Iraq 27485 T 32 32
92 Iraq 27486 A 32 32
93 Iraq 27487 A 32 32
94 Iraq 27488 A 32 32
95 Iraq 27489 A 32 32
96 Iraq 27490 G 32 32
97 Iraq 27491 A 32 32
98 Iraq 27492 A 32 32
99 Iraq 27493 C 32 32
100 Iraq 27494 C 32 32
101 Iraq 27495 T 32 32
102 Iraq 27496 T 32 32
103 Iraq 27497 G 32 32
104 Iraq 27498 C 32 32
105 Iraq 27499 T 32 32
106 Iraq 27500 C 32 32
107 Iraq 27501 T 32 32
108 Iraq 27502 T 32 32
109 Iraq 27503 C 32 32
110 Iraq 27504 T 32 32
111 Iraq 27505 G 32 32
112 Iraq 27506 G 32 32
113 Iraq 27507 A 32 32
114 Iraq 27508 A 32 32
115 Iraq 27509 C 32 32
116 Iraq 27510 A 32 32
117 Iraq 27511 T 32 32
118 Iraq 27512 A 32 32
119 Iraq 27513 C 32 32
120 Iraq 27514 G 32 32
121 Iraq 27515 A 32 32
122 Iraq 27516 G 32 32
123 Iraq 27517 G 32 32
124 Iraq 27518 G 32 32
125 Iraq 27519 C 32 32
126 Iraq 27520 A 32 32
127 Iraq 27521 A 32 32
128 Iraq 27522 T 32 32
129 Iraq 27523 T 32 32
130 Iraq 27524 C 32 32
131 Iraq 27525 A 32 32
132 Iraq 27526 C 32 32
133 Iraq 27527 C 32 32
134 Iraq 27528 A 32 32
135 Iraq 27529 T 32 32
136 Iraq 27530 T 32 32
137 Iraq 27531 T 32 32
138 Iraq 27532 C 32 32
139 Iraq 27533 A 32 32
140 Iraq 27534 T 32 32
141 Iraq 27535 C 32 32
142 Iraq 27536 C 32 32
143 Iraq 27537 T 32 32
144 Iraq 27538 C 32 32
145 Iraq 27539 T 32 32
146 Iraq 27540 A 32 32
147 Iraq 27541 G 32 32
148 Iraq 27542 C 32 32
149 Iraq 27543 T 32 32
150 Iraq 27544 G 32 32
151 Iraq 27545 A 32 32
152 Iraq 27546 T 32 32
153 Iraq 27547 A 32 32
154 Iraq 27548 A 32 32
155 Iraq 27549 C 32 32
156 Iraq 27550 A 32 32
157 Iraq 27551 A 32 32
158 Iraq 27552 A 32 32
159 Iraq 27553 T 32 32
160 Iraq 27554 T 32 32
161 Iraq 27555 T 32 32
162 Iraq 27556 G 32 32
163 Iraq 27557 C 32 32
164 Iraq 27558 A 32 32
165 Iraq 27559 C 32 32
166 Iraq 27560 T 32 32
167 Iraq 27561 G 32 32
168 Iraq 27562 A 32 32
169 Iraq 27563 C 32 32
170 Iraq 27564 T 32 32
171 Iraq 27565 T 32 32
172 Iraq 27566 G 32 32
173 Iraq 27567 C 32 32
174 Iraq 27568 T 32 32
175 Iraq 27569 T 32 32
176 Iraq 27570 T 32 32
177 Iraq 27571 A 32 32
178 Iraq 27572 G 32 32
179 Iraq 27573 C 32 32
180 Iraq 27574 A 32 32
181 Iraq 27575 C 32 32
182 Iraq 27576 T 32 32
183 Iraq 27577 C 32 32
184 Iraq 27578 A 32 32
185 Iraq 27579 A 32 32
186 Iraq 27580 T 32 32
187 Iraq 27581 T 32 32
188 Iraq 27582 T 32 32
189 Iraq 27583 G 32 32
190 Iraq 27584 C 32 32
191 Iraq 27585 T 32 32
192 Iraq 27586 T 32 32
193 Iraq 27587 T 32 32
194 Iraq 27588 T 32 32
195 Iraq 27589 G 32 32
196 Iraq 27590 C 32 32
197 Iraq 27591 T 32 32
198 Iraq 27592 T 32 32
199 Iraq 27593 G 32 32
200 Iraq 27594 T 32 32
201 Iraq 27595 C 32 32
202 Iraq 27596 C 32 32
203 Iraq 27597 T 32 32
204 Iraq 27598 G 32 32
205 Iraq 27599 A 32 32
206 Iraq 27600 C 32 32
207 Iraq 27601 G 32 32
208 Iraq 27602 G 32 32
209 Iraq 27603 C 32 32
210 Iraq 27604 G 32 32
211 Iraq 27605 T 32 32
212 Iraq 27606 A 32 32
213 Iraq 27607 A 32 32
214 Iraq 27608 A 32 32
215 Iraq 27609 A 32 32
216 Iraq 27610 C 32 32
217 Iraq 27611 A 32 32
218 Iraq 27612 C 32 32
219 Iraq 27613 G 32 32
220 Iraq 27614 T 32 32
221 Iraq 27615 C 32 32
222 Iraq 27616 T 32 32
223 Iraq 27617 A 32 32
224 Iraq 27618 T 32 32
225 Iraq 27619 C 32 32
226 Iraq 27620 A 32 32
227 Iraq 27621 G 32 32
228 Iraq 27622 T 32 32
229 Iraq 27623 T 32 32
230 Iraq 27624 A 32 32
231 Iraq 27625 C 32 32
232 Iraq 27626 G 32 32
233 Iraq 27627 T 32 32
234 Iraq 27628 G 32 32
235 Iraq 27629 C 32 32
236 Iraq 27630 C 32 32
237 Iraq 27631 A 32 32
238 Iraq 27632 G 32 32
239 Iraq 27633 A 32 32
240 Iraq 27634 T 32 32
241 Iraq 27635 C 32 32
242 Iraq 27636 A 32 32
243 Iraq 27637 G 32 32
244 Iraq 27638 T 32 32
245 Iraq 27639 T 32 32
246 Iraq 27640 T 32 32
247 Iraq 27641 C 32 32
248 Iraq 27642 A 32 32
249 Iraq 27643 C 32 32
250 Iraq 27644 C 32 32
251 Iraq 27645 T 32 32
252 Iraq 27646 A 32 32
253 Iraq 27647 A 32 32
254 Iraq 27648 A 32 32
255 Iraq 27649 C 32 32
256 Iraq 27650 T 32 32
257 Iraq 27651 G 32 32
258 Iraq 27652 T 32 32
259 Iraq 27653 T 32 32
260 Iraq 27654 C 32 32
261 Iraq 27655 A 32 32
262 Iraq 27656 T 32 32
263 Iraq 27657 C 32 32
264 Iraq 27658 A 32 32
265 Iraq 27659 G 32 32
266 Iraq 27660 A 32 32
267 Iraq 27661 C 32 32
268 Iraq 27662 A 32 32
269 Iraq 27663 A 32 32
270 Iraq 27664 G 32 32
271 Iraq 27665 A 32 32
272 Iraq 27666 G 32 32
273 Iraq 27667 G 32 32
274 Iraq 27668 A 32 32
275 Iraq 27669 A 32 32
276 Iraq 27670 G 32 32
277 Iraq 27671 T 32 32
278 Iraq 27672 T 32 32
279 Iraq 27673 C 32 32
280 Iraq 27674 A 32 32
281 Iraq 27675 A 32 32
282 Iraq 27676 G 32 32
283 Iraq 27677 A 32 32
284 Iraq 27678 A 32 32
285 Iraq 27679 C 32 32
286 Iraq 27680 T 32 32
287 Iraq 27681 T 32 32
288 Iraq 27682 T 32 32
289 Iraq 27683 A 32 32
290 Iraq 27684 C 32 32
291 Iraq 27685 T 32 32
292 Iraq 27686 C 32 32
293 Iraq 27687 T 32 32
294 Iraq 27688 C 32 32
295 Iraq 27689 C 32 32
296 Iraq 27690 A 32 32
297 Iraq 27691 A 32 32
298 Iraq 27692 T 32 32
299 Iraq 27693 T 32 32
300 Iraq 27694 T 32 32
301 Iraq 27695 T 32 32
302 Iraq 27696 T 32 32
303 Iraq 27697 C 32 32
304 Iraq 27698 T 32 32
305 Iraq 27699 T 32 32
306 Iraq 27700 A 32 32
307 Iraq 27701 T 32 32
308 Iraq 27702 T 32 32
309 Iraq 27703 G 32 32
310 Iraq 27704 T 32 32
311 Iraq 27705 T 32 32
312 Iraq 27706 G 32 32
313 Iraq 27707 C 32 32
314 Iraq 27708 G 32 32
315 Iraq 27709 G 32 32
316 Iraq 27710 C 32 32
317 Iraq 27711 A 32 32
318 Iraq 27712 A 32 32
319 Iraq 27713 T 32 32
320 Iraq 27714 A 32 32
321 Iraq 27715 G 32 32
322 Iraq 27716 T 32 32
323 Iraq 27717 G 32 32
324 Iraq 27718 T 32 32
325 Iraq 27719 T 32 32
326 Iraq 27720 T 32 32
327 Iraq 27721 A 32 32
328 Iraq 27722 T 32 32
329 Iraq 27723 A 32 32
330 Iraq 27724 A 32 32
331 Iraq 27725 C 32 32
332 Iraq 27726 A 32 32
333 Iraq 27727 C 32 32
334 Iraq 27728 T 32 32
335 Iraq 27729 T 32 32
336 Iraq 27730 T 32 32
337 Iraq 27731 G 32 32
338 Iraq 27732 C 32 32
339 Iraq 27733 T 32 32
340 Iraq 27734 T 32 32
341 Iraq 27735 C 32 32
342 Iraq 27736 A 32 32
343 Iraq 27737 C 32 32
344 Iraq 27738 A 32 32
345 Iraq 27739 C 32 32
346 Iraq 27740 T 32 32
347 Iraq 27741 C 32 32
348 Iraq 27742 A 32 32
349 Iraq 27743 A 32 32
350 Iraq 27744 A 32 32
351 Iraq 27745 A 32 32
352 Iraq 27746 G 32 32
353 Iraq 27747 A 32 32
354 Iraq 27748 A 32 32
355 Iraq 27749 A 32 32
356 Iraq 27750 G 32 32
357 Iraq 27751 A 32 32
358 Iraq 27752 C 32 32
359 Iraq 27753 A 32 32
360 Iraq 27754 G 32 32
361 Iraq 27755 A 32 32
362 Iraq 27756 A 32 32
363 Iraq 27757 T 32 32
364 Iraq 27758 G 32 32
365 Iraq 27759 A 32 32