National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 5     1                       3 1 4  
C     18   1     1                            
D     6     1     1                          
E 2   24     3     2     1         1          
F     30         2     1   1               1  
G     12           2                       1  
H     9     1       2     2   1             2
I     25                                 2 1  
K     21       1         1         1          
L     45         5         4     1     1      
M     6               1   1                  
N     6                       1              
P     18                   5     1   1 1 1    
Q 2   15       1     3             1 2        
R     15   1           1             1 1 1    
S     21         1         1           1      
T     30 1             7 1     1     1        
V     24         4     4   1               1  
Y 1   15             1                       3

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 India 27394 A 4719 4719
1 India 27395 T 4719 4719
2 India 27396 G T 4719 4717 Met1?
3 India 27397 A G 4720 4719 Lys2Glu
4 India 27398 A 4720 4720
5 India 27399 A 4721 4721
6 India 27400 A 4721 4721
7 India 27401 T 4721 4721
8 India 27402 T 4721 4721
9 India 27403 A 4721 4721
10 India 27404 T 4721 4720
11 India 27405 T 4721 4719
12 India 27406 C 4721 4720
13 India 27407 T 4721 4720
14 India 27408 T 4723 4722
15 India 27409 T 4723 4722
16 India 27410 T 4723 4722
17 India 27411 C 4723 4721
18 India 27412 T 4723 4722
19 India 27413 T 4723 4723
20 India 27414 G A 4723 4722 Leu7Leu
21 India 27415 G 4723 4723
22 India 27416 C T,A 4723 4714 Ala8Val-p.Ala8Glu
23 India 27417 A 4724 4724
24 India 27418 C 4724 4724
25 India 27419 T 4724 4724
26 India 27420 G 4725 4725
27 India 27421 A 4725 4725
28 India 27422 T C 4725 4722 Ile10Thr
29 India 27423 A 4725 4725
30 India 27424 A 4725 4724
31 India 27425 C T 4725 4724 Thr11Ile
32 India 27426 A 4725 4724
33 India 27427 C 4725 4725
34 India 27428 T 4725 4725
35 India 27429 C T 4725 4723 Leu12Leu
36 India 27430 G 4725 4725
37 India 27431 C 4725 4725
38 India 27432 T 4725 4725
39 India 27433 A 4725 4724
40 India 27434 C T,A 4725 4722 Thr14Ile-p.Thr14Asn
41 India 27435 T 4725 4724
42 India 27436 T 4725 4724
43 India 27437 G 4725 4724
44 India 27438 T C 4725 4723 Cys15Cys
45 India 27439 G 4726 4725
46 India 27440 A 4726 4725
47 India 27441 G 4726 4725
48 India 27442 C T 4726 4725 Leu17Phe
49 India 27443 T 4726 4726
50 India 27444 T 4726 4726
51 India 27445 T 4726 4726
52 India 27446 A 4726 4726
53 India 27447 T 4727 4727
54 India 27448 C T 4727 4726 His19Tyr
55 India 27449 A 4726 4726
56 India 27450 C 4727 4727
57 India 27451 T 4728 4728
58 India 27452 A 4729 4729
59 India 27453 C 4729 4727
60 India 27454 C 4728 4726
61 India 27455 A 4728 4726
62 India 27456 A 4729 4727
63 India 27457 G T 4729 4725 Glu22*
64 India 27458 A 4729 4727
65 India 27459 G T 4729 4724 Glu22Asp
66 India 27460 T 4729 4725
67 India 27461 G 4729 4725
68 India 27462 T 4729 4724
69 India 27463 G T 4729 4722 Val24Phe
70 India 27464 T 4729 4725
71 India 27465 T 4729 4725
72 India 27466 A 4729 4725
73 India 27467 G C 4729 4721 Arg25Thr
74 India 27468 A 4729 4726
75 India 27469 G 4729 4726
76 India 27470 G 4730 4728
77 India 27471 T G 4730 4727 Gly26Gly
78 India 27472 A 4730 4728
79 India 27473 C 4730 4728
80 India 27474 A 4730 4728
81 India 27475 A 4730 4728
82 India 27476 C T,G 4730 4722 Thr28Ile-p.Thr28Arg
83 India 27477 A 4730 4728
84 India 27478 G A 4730 4726 Val29Ile
85 India 27479 T 4730 4728
86 India 27480 A 4730 4727
87 India 27481 C 4730 4728
88 India 27482 T 4730 4728
89 India 27483 T 4730 4728
90 India 27484 T 4730 4728
91 India 27485 T 4730 4728
92 India 27486 A 4730 4728
93 India 27487 A 4730 4728
94 India 27488 A 4730 4728
95 India 27489 A 4730 4728
96 India 27490 G 4730 4727
97 India 27491 A 4730 4728
98 India 27492 A 4738 4736
99 India 27493 C T 4738 4733 Pro34Ser
100 India 27494 C T 4738 4732 Pro34Leu
101 India 27495 T A 4738 4730 Pro34Pro
102 India 27496 T 4741 4736
103 India 27497 G T 4744 4741 Cys35Phe
104 India 27498 C 4744 4742
105 India 27499 T 4748 4746
106 India 27500 C 4748 4747
107 India 27501 T 4748 4747
108 India 27502 T 4748 4747
109 India 27503 C T 4748 4745 Ser37Phe
110 India 27504 T A 4748 4744 Ser37Ser
111 India 27505 G 4749 4748
112 India 27506 G T 4749 4735 Gly38Val
113 India 27507 A 4749 4747
114 India 27508 A 4747 4745
115 India 27509 C A,T 4745 4728 Thr39Lys-p.Thr39Ile
116 India 27510 A 4745 4742
117 India 27511 T C 4746 4732 Tyr40His
118 India 27512 A 4720 4715
119 India 27513 C T 4720 4714 Tyr40Tyr
120 India 27514 G 4720 4716
121 India 27515 A 4718 4714
122 India 27516 G 4718 4714
123 India 27517 G 4718 4714
124 India 27518 G 4715 4711
125 India 27519 C 4714 4709
126 India 27520 A 4714 4708
127 India 27521 A 4712 4707
128 India 27522 T 4711 4705
129 India 27523 T 4710 4705
130 India 27524 C 4710 4705
131 India 27525 A 4708 4703
132 India 27526 C 4707 4702
133 India 27527 C T 4688 4677 Pro45Leu
134 India 27528 A 4623 4609
135 India 27529 T 4617 4599
136 India 27530 T 4609 4591
137 India 27531 T 4607 4589
138 India 27532 C T,A 4604 4582 His47Tyr-p.His47Asn
139 India 27533 A T 4601 4582 His47Leu
140 India 27534 T C 4513 4482 His47His
141 India 27535 C A 4456 4426 Pro48Thr
142 India 27536 C T,G 4444 4417 Pro48Leu-p.Pro48Arg
143 India 27537 T 4442 4417
144 India 27538 C 4438 4411
145 India 27539 T 4437 4415
146 India 27540 A 4436 4414
147 India 27541 G T 4433 4415 Ala50Ser
148 India 27542 C 4432 4418
149 India 27543 T A 4431 4415 Ala50Ala
150 India 27544 G 4431 4415
151 India 27545 A 4430 4414
152 India 27546 T 4430 4413
153 India 27547 A 4428 4408
154 India 27548 A 4428 4408
155 India 27549 C T 4428 4407 Asn52Asn
156 India 27550 A 4427 4409
157 India 27551 A 4427 4409
158 India 27552 A 4426 4409
159 India 27553 T 4426 4407
160 India 27554 T 4426 4408
161 India 27555 T A 4425 4407 Phe54Leu
162 India 27556 G 4425 4410
163 India 27557 C T 4423 4405 Ala55Val
164 India 27558 A 4423 4405
165 India 27559 C 4423 4404
166 India 27560 T 4423 4403
167 India 27561 G T 4422 4407 Leu56Leu
168 India 27562 A 4422 4412
169 India 27563 C 4421 4407
170 India 27564 T 4421 4407
171 India 27565 T 4420 4408
172 India 27566 G 4420 4406
173 India 27567 C 4420 4410
174 India 27568 T 4420 4411
175 India 27569 T 4420 4410
176 India 27570 T 4419 4407
177 India 27571 A 4417 4405
178 India 27572 G 4416 4407
179 India 27573 C 4414 4404
180 India 27574 A 4412 4402
181 India 27575 C T 4412 4404 Thr61Ile
182 India 27576 T 4411 4401
183 India 27577 C T 4411 4402 Gln62*
184 India 27578 A 4411 4406
185 India 27579 A 4411 4403
186 India 27580 T 4411 4403
187 India 27581 T 4410 4404
188 India 27582 T 4408 4402
189 India 27583 G 4407 4401
190 India 27584 C 4407 4397
191 India 27585 T 4406 4395
192 India 27586 T 4407 4398
193 India 27587 T 4407 4400
194 India 27588 T 4406 4397
195 India 27589 G T 4403 4392 Ala66Ser
196 India 27590 C T 4402 4393 Ala66Val
197 India 27591 T 4401 4391
198 India 27592 T 4386 4378
199 India 27593 G 4386 4378
200 India 27594 T 4387 4381
201 India 27595 C 4387 4375
202 India 27596 C 4386 4376
203 India 27597 T 4384 4372
204 India 27598 G 4384 4371
205 India 27599 A G 4383 4370 Asp69Gly
206 India 27600 C T 4385 4371 Asp69Asp
207 India 27601 G 4384 4371
208 India 27602 G 4384 4373
209 India 27603 C T 4383 4370 Gly70Gly
210 India 27604 G A 4382 4368 Val71Ile
211 India 27605 T 4382 4371
212 India 27606 A 4382 4370
213 India 27607 A 4381 4372
214 India 27608 A 4381 4372
215 India 27609 A G 4381 4371 Lys72Lys
216 India 27610 C G 4378 4370 His73Asp
217 India 27611 A T 4378 4366 His73Leu
218 India 27612 C T 4378 4362 His73His
219 India 27613 G T 4377 4360 Val74Phe
220 India 27614 T 4378 4368
221 India 27615 C T 4378 4370 Val74Val
222 India 27616 T 4378 4370
223 India 27617 A 4378 4368
224 India 27618 T C 4378 4370 Tyr75Tyr
225 India 27619 C 4378 4370
226 India 27620 A G 4377 4369 Gln76Arg
227 India 27621 G T,A 4376 4365 Gln76His-p.Gln76Gln
228 India 27622 T 4375 4365
229 India 27623 T C 4375 4368 Leu77Ser
230 India 27624 A 4375 4369
231 India 27625 C T 4362 4357 Arg78Cys
232 India 27626 G 4362 4355
233 India 27627 T 4362 4360
234 India 27628 G T 4362 4356 Ala79Ser
235 India 27629 C T 4362 4360 Ala79Val
236 India 27630 C T 4361 4357 Ala79Ala
237 India 27631 A C 4361 4355 Arg80Arg
238 India 27632 G T 4361 4359 Arg80Ile
239 India 27633 A C 4361 4358 Arg80Ser
240 India 27634 T 4362 4358
241 India 27635 C T 4362 4355 Ser81Leu
242 India 27636 A 4362 4357
243 India 27637 G 4362 4358
244 India 27638 T 4362 4357
245 India 27639 T 4362 4358
246 India 27640 T 4362 4358
247 India 27641 C 4360 4356
248 India 27642 A 4359 4355
249 India 27643 C 4359 4357
250 India 27644 C T 4355 4350 Pro84Leu
251 India 27645 T 4353 4350
252 India 27646 A C 4353 4347 Lys85Gln
253 India 27647 A 4353 4347
254 India 27648 A 4352 4345
255 India 27649 C 4352 4345
256 India 27650 T 4349 4340
257 India 27651 G 4349 4341
258 India 27652 T A,G 4349 4336 Phe87Ile-p.Phe87Val
259 India 27653 T 4349 4340
260 India 27654 C 4349 4344
261 India 27655 A 4349 4344
262 India 27656 T 4349 4343
263 India 27657 C 4350 4344
264 India 27658 A 4350 4343
265 India 27659 G 4348 4343
266 India 27660 A 4346 4339
267 India 27661 C 4347 4342
268 India 27662 A G 4347 4334 Gln90Arg
269 India 27663 A T 4347 4342 Gln90His
270 India 27664 G 4347 4342
271 India 27665 A G 4347 4341 Glu91Gly
272 India 27666 G 4347 4342
273 India 27667 G 4346 4340
274 India 27668 A 4346 4341
275 India 27669 A C 4346 4338 Glu92Asp
276 India 27670 G T,A 4346 4339 Val93Phe-p.Val93Ile
277 India 27671 T 4346 4342
278 India 27672 T 4345 4340
279 India 27673 C G,T 4345 4335 Gln94*-p.Gln94Glu
280 India 27674 A 4345 4338
281 India 27675 A C 4345 4337 Gln94His
282 India 27676 G A 4345 4335 Glu95Lys
283 India 27677 A G 4345 4336 Glu95Gly
284 India 27678 A 4345 4340
285 India 27679 C T 4344 4336 Leu96Phe
286 India 27680 T 4342 4335
287 India 27681 T 4342 4339
288 India 27682 T 4341 4339
289 India 27683 A 4340 4337
290 India 27684 C T,A 4339 4325 Tyr97*-p.Tyr97Tyr
291 India 27685 T 4337 4334
292 India 27686 C 4336 4326
293 India 27687 T 4334 4321
294 India 27688 C 4334 4319
295 India 27689 C T 4334 4313 Pro99Leu
296 India 27690 A 4333 4324
297 India 27691 A G 4333 4318 Ile100Val
298 India 27692 T 4333 4324
299 India 27693 T 4333 4323
300 India 27694 T 4332 4324
301 India 27695 T 4327 4318
302 India 27696 T C 4327 4316 Phe101Phe
303 India 27697 C T 4327 4316 Leu102Phe
304 India 27698 T 4327 4320
305 India 27699 T 4326 4320
306 India 27700 A 4326 4319
307 India 27701 T 4326 4318
308 India 27702 T 4326 4318
309 India 27703 G T,A 4326 4282 Val104Phe-p.Val104Ile
310 India 27704 T 4325 4319
311 India 27705 T 4325 4318
312 India 27706 G A 4325 4316 Ala105Thr
313 India 27707 C 4325 4317
314 India 27708 G A,T 4325 4313 Ala105Ala-p.Ala105Ala
315 India 27709 G 4325 4318
316 India 27710 C 4324 4318
317 India 27711 A G 4322 4307 Ala106Ala
318 India 27712 A 4322 4311
319 India 27713 T C 4322 4309 Ile107Thr
320 India 27714 A 4322 4309
321 India 27715 G T 4322 4308 Val108Leu
322 India 27716 T 4322 4308
323 India 27717 G 4322 4310
324 India 27718 T 4322 4311
325 India 27719 T 4322 4313
326 India 27720 T 4322 4315
327 India 27721 A 4321 4314
328 India 27722 T 4321 4313
329 India 27723 A 4321 4312
330 India 27724 A G 4320 4309 Thr111Ala
331 India 27725 C 4320 4312
332 India 27726 A 4317 4308
333 India 27727 C T 4316 4304 Leu112Phe
334 India 27728 T 4315 4306
335 India 27729 T 4315 4306
336 India 27730 T 4315 4307
337 India 27731 G 4314 4311
338 India 27732 C 4313 4311
339 India 27733 T 4312 4310
340 India 27734 T 4311 4308
341 India 27735 C T 4310 4305 Phe114Phe
342 India 27736 A 4310 4306
343 India 27737 C T 4310 4304 Thr115Ile
344 India 27738 A 4310 4303
345 India 27739 C T 4310 4304 Leu116Phe
346 India 27740 T C 4308 4304 Leu116Pro
347 India 27741 C T 4308 4299 Leu116Leu
348 India 27742 A 4308 4304
349 India 27743 A 4308 4306
350 India 27744 A 4308 4307
351 India 27745 A 4307 4307
352 India 27746 G 4307 4304
353 India 27747 A 4307 4307
354 India 27748 A 4306 4306
355 India 27749 A 4306 4306
356 India 27750 G 4306 4303
357 India 27751 A 4305 4305
358 India 27752 C T 4304 4300 Thr120Ile
359 India 27753 A 4304 4302
360 India 27754 G T,C 4304 4296 Glu121*-p.Glu121Gln
361 India 27755 A 4302 4302
362 India 27756 A C 4302 4300 -p.Glu121Asp
363 India 27757 T 4302 4302
364 India 27758 G 4300 4300
365 India 27759 A 4298 4298