National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                 1    
C     18         1                            
D     6                                     2
E     24                                      
F     30                   2                  
G     12   1       1                          
H     9                                     1
I     25               1                 1 2  
K     21                 1                    
L     45                   3     1     1      
M     6                                      
N     6                       1              
P     18                   1           1 1    
Q 1   15             1                        
R     15               1 1                    
S     21         1         1           1      
T     30               6                 1    
V     24         1         1                  
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Iceland 27394 A 4156 4156
1 Iceland 27395 T 4156 4156
2 Iceland 27396 G 4156 4156
3 Iceland 27397 A 4156 4156
4 Iceland 27398 A 4156 4156
5 Iceland 27399 A 4156 4156
6 Iceland 27400 A 4156 4156
7 Iceland 27401 T 4156 4156
8 Iceland 27402 T 4156 4156
9 Iceland 27403 A 4156 4156
10 Iceland 27404 T 4156 4156
11 Iceland 27405 T C 4156 4155 Ile4Ile
12 Iceland 27406 C 4156 4156
13 Iceland 27407 T C 4156 4155 Leu5Pro
14 Iceland 27408 T 4156 4156
15 Iceland 27409 T C 4156 4150 Phe6Leu
16 Iceland 27410 T 4156 4156
17 Iceland 27411 C 4156 4156
18 Iceland 27412 T 4156 4156
19 Iceland 27413 T 4156 4156
20 Iceland 27414 G 4156 4156
21 Iceland 27415 G 4156 4156
22 Iceland 27416 C 4156 4156
23 Iceland 27417 A 4156 4156
24 Iceland 27418 C 4156 4156
25 Iceland 27419 T 4156 4156
26 Iceland 27420 G 4156 4156
27 Iceland 27421 A 4156 4156
28 Iceland 27422 T C 4156 4155 Ile10Thr
29 Iceland 27423 A 4156 4156
30 Iceland 27424 A 4156 4156
31 Iceland 27425 C 4156 4156
32 Iceland 27426 A 4156 4156
33 Iceland 27427 C 4156 4156
34 Iceland 27428 T 4156 4156
35 Iceland 27429 C 4156 4156
36 Iceland 27430 G A 4156 4148 Ala13Thr
37 Iceland 27431 C 4156 4156
38 Iceland 27432 T 4156 4156
39 Iceland 27433 A 4156 4156
40 Iceland 27434 C 4156 4156
41 Iceland 27435 T 4156 4156
42 Iceland 27436 T 4156 4156
43 Iceland 27437 G T 4156 4155 Cys15Phe
44 Iceland 27438 T 4156 4156
45 Iceland 27439 G 4156 4156
46 Iceland 27440 A 4156 4156
47 Iceland 27441 G 4156 4156
48 Iceland 27442 C 4156 4156
49 Iceland 27443 T 4156 4156
50 Iceland 27444 T 4156 4156
51 Iceland 27445 T 4156 4156
52 Iceland 27446 A 4158 4158
53 Iceland 27447 T 4162 4162
54 Iceland 27448 C 4162 4162
55 Iceland 27449 A 4162 4162
56 Iceland 27450 C 4162 4162
57 Iceland 27451 T 4162 4162
58 Iceland 27452 A 4162 4162
59 Iceland 27453 C 4162 4162
60 Iceland 27454 C 4162 4162
61 Iceland 27455 A 4162 4162
62 Iceland 27456 A 4162 4162
63 Iceland 27457 G 4162 4162
64 Iceland 27458 A 4162 4162
65 Iceland 27459 G 4162 4162
66 Iceland 27460 T 4162 4162
67 Iceland 27461 G 4162 4162
68 Iceland 27462 T 4162 4162
69 Iceland 27463 G 4162 4162
70 Iceland 27464 T 4162 4162
71 Iceland 27465 T 4162 4162
72 Iceland 27466 A 4162 4162
73 Iceland 27467 G A 4162 4160 Arg25Lys
74 Iceland 27468 A 4162 4162
75 Iceland 27469 G 4162 4162
76 Iceland 27470 G 4162 4162
77 Iceland 27471 T 4162 4162
78 Iceland 27472 A 4166 4166
79 Iceland 27473 C T 4166 4165 Thr27Ile
80 Iceland 27474 A 4166 4166
81 Iceland 27475 A 4166 4166
82 Iceland 27476 C T 4166 4163 Thr28Ile
83 Iceland 27477 A 4166 4166
84 Iceland 27478 G T 4166 4163 Val29Leu
85 Iceland 27479 T 4166 4166
86 Iceland 27480 A 4166 4166
87 Iceland 27481 C 4166 4166
88 Iceland 27482 T 4166 4166
89 Iceland 27483 T 4166 4166
90 Iceland 27484 T 4166 4166
91 Iceland 27485 T 4166 4166
92 Iceland 27486 A 4166 4166
93 Iceland 27487 A 4166 4166
94 Iceland 27488 A 4166 4166
95 Iceland 27489 A G 4166 4164 Lys32Lys
96 Iceland 27490 G 4166 4166
97 Iceland 27491 A 4166 4166
98 Iceland 27492 A 4166 4166
99 Iceland 27493 C 4166 4166
100 Iceland 27494 C 4166 4166
101 Iceland 27495 T 4166 4166
102 Iceland 27496 T 4166 4166
103 Iceland 27497 G 4166 4166
104 Iceland 27498 C 4166 4166
105 Iceland 27499 T 4166 4166
106 Iceland 27500 C 4166 4166
107 Iceland 27501 T 4166 4166
108 Iceland 27502 T 4166 4166
109 Iceland 27503 C T 4166 4165 Ser37Phe
110 Iceland 27504 T 4166 4166
111 Iceland 27505 G 4166 4166
112 Iceland 27506 G 4166 4166
113 Iceland 27507 A 4166 4166
114 Iceland 27508 A 4166 4166
115 Iceland 27509 C T 4166 4159 Thr39Ile
116 Iceland 27510 A 4166 4166
117 Iceland 27511 T 4164 4164
118 Iceland 27512 A 4139 4137
119 Iceland 27513 C 4137 4135
120 Iceland 27514 G 4137 4135
121 Iceland 27515 A 4137 4135
122 Iceland 27516 G 4137 4135
123 Iceland 27517 G 4137 4135
124 Iceland 27518 G 4137 4135
125 Iceland 27519 C 4137 4135
126 Iceland 27520 A 4137 4135
127 Iceland 27521 A 4137 4135
128 Iceland 27522 T 4137 4135
129 Iceland 27523 T 4137 4135
130 Iceland 27524 C 4137 4135
131 Iceland 27525 A 4137 4135
132 Iceland 27526 C 4137 4135
133 Iceland 27527 C T 4137 4134 Pro45Leu
134 Iceland 27528 A 4137 4135
135 Iceland 27529 T 4137 4135
136 Iceland 27530 T 4137 4135
137 Iceland 27531 T 4137 4135
138 Iceland 27532 C T 4137 4133 His47Tyr
139 Iceland 27533 A 4137 4135
140 Iceland 27534 T 4094 4092
141 Iceland 27535 C 4086 4084
142 Iceland 27536 C 4086 4083
143 Iceland 27537 T 4086 4083
144 Iceland 27538 C 4086 4082
145 Iceland 27539 T 4086 4083
146 Iceland 27540 A 4086 4083
147 Iceland 27541 G 4086 4082
148 Iceland 27542 C 4086 4082
149 Iceland 27543 T 4086 4083
150 Iceland 27544 G T 4086 4079 Asp51Tyr
151 Iceland 27545 A 4086 4083
152 Iceland 27546 T 4086 4083
153 Iceland 27547 A 4086 4082
154 Iceland 27548 A 4086 4083
155 Iceland 27549 C T 4086 4081 Asn52Asn
156 Iceland 27550 A 4086 4083
157 Iceland 27551 A 4086 4083
158 Iceland 27552 A 4086 4083
159 Iceland 27553 T 4085 4084
160 Iceland 27554 T 4085 4084
161 Iceland 27555 T 4085 4083
162 Iceland 27556 G 4085 4083
163 Iceland 27557 C 4085 4085
164 Iceland 27558 A 4085 4084
165 Iceland 27559 C T 4085 4082 Leu56Leu
166 Iceland 27560 T 4085 4085
167 Iceland 27561 G T 4085 4082 Leu56Leu
168 Iceland 27562 A 4085 4085
169 Iceland 27563 C T 4085 4084 Thr57Ile
170 Iceland 27564 T 4085 4085
171 Iceland 27565 T 4085 4085
172 Iceland 27566 G 4085 4085
173 Iceland 27567 C 4085 4085
174 Iceland 27568 T 4085 4085
175 Iceland 27569 T 4084 4084
176 Iceland 27570 T 4084 4083
177 Iceland 27571 A 4084 4084
178 Iceland 27572 G 4083 4083
179 Iceland 27573 C 4083 4083
180 Iceland 27574 A 4083 4083
181 Iceland 27575 C T 4083 4082 Thr61Ile
182 Iceland 27576 T C 4083 4081 Thr61Thr
183 Iceland 27577 C 4083 4083
184 Iceland 27578 A 4083 4082
185 Iceland 27579 A 4083 4080
186 Iceland 27580 T 4083 4080
187 Iceland 27581 T 4083 4082
188 Iceland 27582 T 4083 4083
189 Iceland 27583 G 4082 4082
190 Iceland 27584 C 4082 4081
191 Iceland 27585 T 4082 4082
192 Iceland 27586 T 4082 4081
193 Iceland 27587 T 4082 4082
194 Iceland 27588 T 4082 4082
195 Iceland 27589 G 4082 4082
196 Iceland 27590 C 4082 4082
197 Iceland 27591 T 4081 4080
198 Iceland 27592 T 4081 4081
199 Iceland 27593 G 4081 4081
200 Iceland 27594 T 4081 4080
201 Iceland 27595 C 4081 4081
202 Iceland 27596 C 4074 4068
203 Iceland 27597 T 4074 4070
204 Iceland 27598 G T 4074 4065 Asp69Tyr
205 Iceland 27599 A 4074 4069
206 Iceland 27600 C 4073 4068
207 Iceland 27601 G T 4072 4066 Gly70Cys
208 Iceland 27602 G 4072 4067
209 Iceland 27603 C T 4071 4057 Gly70Gly
210 Iceland 27604 G 4071 4066
211 Iceland 27605 T 4071 4068
212 Iceland 27606 A 4071 4068
213 Iceland 27607 A 4071 4067
214 Iceland 27608 A 4071 4066
215 Iceland 27609 A 4071 4066
216 Iceland 27610 C 4072 4068
217 Iceland 27611 A 4072 4068
218 Iceland 27612 C 4072 4069
219 Iceland 27613 G 4072 4069
220 Iceland 27614 T 4072 4069
221 Iceland 27615 C 4072 4069
222 Iceland 27616 T 4072 4069
223 Iceland 27617 A 4072 4068
224 Iceland 27618 T 4072 4070
225 Iceland 27619 C 4072 4069
226 Iceland 27620 A 4072 4070
227 Iceland 27621 G T 4072 4068 Gln76His
228 Iceland 27622 T 4072 4069
229 Iceland 27623 T C 4072 4068 Leu77Ser
230 Iceland 27624 A 4072 4070
231 Iceland 27625 C 4072 4071
232 Iceland 27626 G 4072 4071
233 Iceland 27627 T 4072 4070
234 Iceland 27628 G 4072 4070
235 Iceland 27629 C 4072 4071
236 Iceland 27630 C 4072 4071
237 Iceland 27631 A 4072 4071
238 Iceland 27632 G T 4072 4070 Arg80Ile
239 Iceland 27633 A 4072 4071
240 Iceland 27634 T 4072 4070
241 Iceland 27635 C 4072 4069
242 Iceland 27636 A 4072 4071
243 Iceland 27637 G 4072 4068
244 Iceland 27638 T 4072 4069
245 Iceland 27639 T 4072 4069
246 Iceland 27640 T 4072 4069
247 Iceland 27641 C T 4072 4067 Ser83Leu
248 Iceland 27642 A 4072 4069
249 Iceland 27643 C T,A 4072 4066 Pro84Ser-p.Pro84Thr
250 Iceland 27644 C 4072 4069
251 Iceland 27645 T 4072 4068
252 Iceland 27646 A 4072 4070
253 Iceland 27647 A 4072 4068
254 Iceland 27648 A 4072 4070
255 Iceland 27649 C 4072 4072
256 Iceland 27650 T 4072 4071
257 Iceland 27651 G 4072 4072
258 Iceland 27652 T 4072 4071
259 Iceland 27653 T 4072 4072
260 Iceland 27654 C 4072 4071
261 Iceland 27655 A G 4072 4066 Ile88Val
262 Iceland 27656 T 4072 4071
263 Iceland 27657 C 4072 4070
264 Iceland 27658 A 4072 4071
265 Iceland 27659 G 4072 4069
266 Iceland 27660 A 4072 4069
267 Iceland 27661 C T 4072 4067 Gln90*
268 Iceland 27662 A 4072 4071
269 Iceland 27663 A 4072 4070
270 Iceland 27664 G 4071 4069
271 Iceland 27665 A 4071 4067
272 Iceland 27666 G 4071 4070
273 Iceland 27667 G 4071 4068
274 Iceland 27668 A 4071 4067
275 Iceland 27669 A 4071 4068
276 Iceland 27670 G T 4071 4065 Val93Phe
277 Iceland 27671 T 4071 4066
278 Iceland 27672 T 4071 4067
279 Iceland 27673 C 4071 4067
280 Iceland 27674 A 4071 4066
281 Iceland 27675 A 4071 4066
282 Iceland 27676 G 4071 4066
283 Iceland 27677 A 4071 4066
284 Iceland 27678 A 4071 4067
285 Iceland 27679 C 4071 4065
286 Iceland 27680 T 4071 4064
287 Iceland 27681 T 4071 4064
288 Iceland 27682 T 4071 4067
289 Iceland 27683 A 4071 4065
290 Iceland 27684 C 4070 4065
291 Iceland 27685 T 4070 4064
292 Iceland 27686 C 4070 4065
293 Iceland 27687 T A 4070 4063 Ser98Ser
294 Iceland 27688 C 4070 4064
295 Iceland 27689 C 4070 4065
296 Iceland 27690 A 4070 4064
297 Iceland 27691 A 4070 4061
298 Iceland 27692 T 4070 4062
299 Iceland 27693 T 4070 4063
300 Iceland 27694 T C 4068 4060 Phe101Leu
301 Iceland 27695 T 4068 4062
302 Iceland 27696 T 4068 4061
303 Iceland 27697 C 4068 4059
304 Iceland 27698 T 4068 4060
305 Iceland 27699 T 4068 4061
306 Iceland 27700 A 4068 4060
307 Iceland 27701 T 4068 4061
308 Iceland 27702 T 4068 4061
309 Iceland 27703 G 4068 4061
310 Iceland 27704 T 4068 4067
311 Iceland 27705 T 4068 4067
312 Iceland 27706 G 4068 4067
313 Iceland 27707 C 4068 4067
314 Iceland 27708 G 4068 4067
315 Iceland 27709 G 4068 4067
316 Iceland 27710 C 4068 4067
317 Iceland 27711 A 4068 4067
318 Iceland 27712 A 4068 4067
319 Iceland 27713 T 4068 4068
320 Iceland 27714 A 4068 4068
321 Iceland 27715 G 4068 4068
322 Iceland 27716 T 4068 4067
323 Iceland 27717 G 4068 4068
324 Iceland 27718 T 4068 4068
325 Iceland 27719 T 4068 4068
326 Iceland 27720 T 4068 4067
327 Iceland 27721 A G 4068 4066 Ile110Val
328 Iceland 27722 T 4068 4068
329 Iceland 27723 A 4068 4068
330 Iceland 27724 A 4068 4068
331 Iceland 27725 C 4068 4068
332 Iceland 27726 A 4068 4068
333 Iceland 27727 C 4068 4068
334 Iceland 27728 T 4068 4068
335 Iceland 27729 T 4068 4068
336 Iceland 27730 T 4068 4068
337 Iceland 27731 G 4068 4068
338 Iceland 27732 C 4068 4067
339 Iceland 27733 T 4068 4067
340 Iceland 27734 T 4068 4068
341 Iceland 27735 C 4068 4068
342 Iceland 27736 A 4068 4067
343 Iceland 27737 C 4068 4067
344 Iceland 27738 A 4068 4067
345 Iceland 27739 C 4068 4067
346 Iceland 27740 T 4068 4068
347 Iceland 27741 C T 4068 4067 Leu116Leu
348 Iceland 27742 A 4068 4067
349 Iceland 27743 A 4068 4068
350 Iceland 27744 A 4068 4067
351 Iceland 27745 A 4068 4068
352 Iceland 27746 G 4068 4068
353 Iceland 27747 A 4068 4067
354 Iceland 27748 A 4068 4067
355 Iceland 27749 A 4068 4067
356 Iceland 27750 G 4068 4067
357 Iceland 27751 A 4068 4068
358 Iceland 27752 C T 4068 4067 Thr120Ile
359 Iceland 27753 A 4068 4068
360 Iceland 27754 G 4068 4068
361 Iceland 27755 A 4068 4067
362 Iceland 27756 A 4068 4067
363 Iceland 27757 T 4068 4068
364 Iceland 27758 G 4068 4068
365 Iceland 27759 A 4065 4065