National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                   1                  
T     30               1                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Guatemala 27394 A 32 32
1 Guatemala 27395 T 32 32
2 Guatemala 27396 G 32 32
3 Guatemala 27397 A 32 32
4 Guatemala 27398 A 32 32
5 Guatemala 27399 A 32 32
6 Guatemala 27400 A 32 32
7 Guatemala 27401 T 32 32
8 Guatemala 27402 T 32 32
9 Guatemala 27403 A 32 32
10 Guatemala 27404 T 32 32
11 Guatemala 27405 T 32 32
12 Guatemala 27406 C 32 32
13 Guatemala 27407 T 32 32
14 Guatemala 27408 T 32 32
15 Guatemala 27409 T 32 32
16 Guatemala 27410 T 32 32
17 Guatemala 27411 C 32 32
18 Guatemala 27412 T 32 32
19 Guatemala 27413 T 32 32
20 Guatemala 27414 G 32 32
21 Guatemala 27415 G 32 32
22 Guatemala 27416 C 32 32
23 Guatemala 27417 A 32 32
24 Guatemala 27418 C 32 32
25 Guatemala 27419 T 32 32
26 Guatemala 27420 G 32 32
27 Guatemala 27421 A 32 32
28 Guatemala 27422 T 32 32
29 Guatemala 27423 A 32 32
30 Guatemala 27424 A 32 32
31 Guatemala 27425 C 32 32
32 Guatemala 27426 A 32 32
33 Guatemala 27427 C 32 32
34 Guatemala 27428 T 32 32
35 Guatemala 27429 C 32 32
36 Guatemala 27430 G 32 32
37 Guatemala 27431 C 32 32
38 Guatemala 27432 T 32 32
39 Guatemala 27433 A 32 32
40 Guatemala 27434 C 32 32
41 Guatemala 27435 T 32 32
42 Guatemala 27436 T 32 32
43 Guatemala 27437 G 32 32
44 Guatemala 27438 T 32 32
45 Guatemala 27439 G 32 32
46 Guatemala 27440 A 32 32
47 Guatemala 27441 G 32 32
48 Guatemala 27442 C 32 32
49 Guatemala 27443 T 32 32
50 Guatemala 27444 T 32 32
51 Guatemala 27445 T 32 32
52 Guatemala 27446 A 32 32
53 Guatemala 27447 T 32 32
54 Guatemala 27448 C 32 32
55 Guatemala 27449 A 32 32
56 Guatemala 27450 C 32 32
57 Guatemala 27451 T 32 32
58 Guatemala 27452 A 32 32
59 Guatemala 27453 C 32 32
60 Guatemala 27454 C 32 32
61 Guatemala 27455 A 32 32
62 Guatemala 27456 A 32 32
63 Guatemala 27457 G 32 32
64 Guatemala 27458 A 32 32
65 Guatemala 27459 G 32 32
66 Guatemala 27460 T 32 32
67 Guatemala 27461 G 32 32
68 Guatemala 27462 T 32 32
69 Guatemala 27463 G 32 32
70 Guatemala 27464 T 32 32
71 Guatemala 27465 T 32 32
72 Guatemala 27466 A 32 32
73 Guatemala 27467 G 32 32
74 Guatemala 27468 A 32 32
75 Guatemala 27469 G 32 32
76 Guatemala 27470 G 32 32
77 Guatemala 27471 T 32 32
78 Guatemala 27472 A 32 32
79 Guatemala 27473 C 32 32
80 Guatemala 27474 A 32 32
81 Guatemala 27475 A 32 32
82 Guatemala 27476 C 32 32
83 Guatemala 27477 A 32 32
84 Guatemala 27478 G 32 32
85 Guatemala 27479 T 32 32
86 Guatemala 27480 A 32 32
87 Guatemala 27481 C 32 32
88 Guatemala 27482 T 32 32
89 Guatemala 27483 T 32 32
90 Guatemala 27484 T 32 32
91 Guatemala 27485 T 32 32
92 Guatemala 27486 A 32 32
93 Guatemala 27487 A 32 32
94 Guatemala 27488 A 32 32
95 Guatemala 27489 A 32 32
96 Guatemala 27490 G 32 32
97 Guatemala 27491 A 32 32
98 Guatemala 27492 A 32 32
99 Guatemala 27493 C 32 32
100 Guatemala 27494 C 32 32
101 Guatemala 27495 T 32 32
102 Guatemala 27496 T 32 32
103 Guatemala 27497 G 32 32
104 Guatemala 27498 C 32 32
105 Guatemala 27499 T 32 32
106 Guatemala 27500 C 32 32
107 Guatemala 27501 T 32 32
108 Guatemala 27502 T 32 32
109 Guatemala 27503 C 32 32
110 Guatemala 27504 T 32 32
111 Guatemala 27505 G 32 32
112 Guatemala 27506 G 32 32
113 Guatemala 27507 A 32 32
114 Guatemala 27508 A 32 32
115 Guatemala 27509 C T 32 30 Thr39Ile
116 Guatemala 27510 A 32 32
117 Guatemala 27511 T 32 32
118 Guatemala 27512 A 32 32
119 Guatemala 27513 C 32 32
120 Guatemala 27514 G 32 32
121 Guatemala 27515 A 32 32
122 Guatemala 27516 G 32 32
123 Guatemala 27517 G 32 32
124 Guatemala 27518 G 32 32
125 Guatemala 27519 C 32 32
126 Guatemala 27520 A 32 32
127 Guatemala 27521 A 32 32
128 Guatemala 27522 T 32 32
129 Guatemala 27523 T 32 32
130 Guatemala 27524 C 32 32
131 Guatemala 27525 A 32 32
132 Guatemala 27526 C 32 32
133 Guatemala 27527 C 32 32
134 Guatemala 27528 A 32 32
135 Guatemala 27529 T 32 32
136 Guatemala 27530 T 32 32
137 Guatemala 27531 T 32 32
138 Guatemala 27532 C 32 32
139 Guatemala 27533 A 32 32
140 Guatemala 27534 T 32 32
141 Guatemala 27535 C 32 32
142 Guatemala 27536 C 32 32
143 Guatemala 27537 T 32 32
144 Guatemala 27538 C 32 32
145 Guatemala 27539 T 32 32
146 Guatemala 27540 A 32 32
147 Guatemala 27541 G 32 32
148 Guatemala 27542 C 32 32
149 Guatemala 27543 T 32 32
150 Guatemala 27544 G 32 32
151 Guatemala 27545 A 32 32
152 Guatemala 27546 T 32 32
153 Guatemala 27547 A 32 32
154 Guatemala 27548 A 32 32
155 Guatemala 27549 C 32 32
156 Guatemala 27550 A 32 32
157 Guatemala 27551 A 32 32
158 Guatemala 27552 A 32 32
159 Guatemala 27553 T 32 32
160 Guatemala 27554 T 32 32
161 Guatemala 27555 T 32 32
162 Guatemala 27556 G 32 32
163 Guatemala 27557 C 32 32
164 Guatemala 27558 A 32 32
165 Guatemala 27559 C 32 32
166 Guatemala 27560 T 32 32
167 Guatemala 27561 G 32 32
168 Guatemala 27562 A 32 32
169 Guatemala 27563 C 32 32
170 Guatemala 27564 T 32 32
171 Guatemala 27565 T 32 32
172 Guatemala 27566 G 32 32
173 Guatemala 27567 C 32 32
174 Guatemala 27568 T 32 32
175 Guatemala 27569 T 32 32
176 Guatemala 27570 T 32 32
177 Guatemala 27571 A 32 32
178 Guatemala 27572 G 32 32
179 Guatemala 27573 C 32 32
180 Guatemala 27574 A 32 32
181 Guatemala 27575 C 32 32
182 Guatemala 27576 T 32 32
183 Guatemala 27577 C 32 32
184 Guatemala 27578 A 32 32
185 Guatemala 27579 A 32 32
186 Guatemala 27580 T 32 32
187 Guatemala 27581 T 32 32
188 Guatemala 27582 T 32 32
189 Guatemala 27583 G 32 32
190 Guatemala 27584 C 32 32
191 Guatemala 27585 T 32 32
192 Guatemala 27586 T 32 32
193 Guatemala 27587 T 32 32
194 Guatemala 27588 T 32 32
195 Guatemala 27589 G 32 32
196 Guatemala 27590 C 32 32
197 Guatemala 27591 T 32 32
198 Guatemala 27592 T 32 32
199 Guatemala 27593 G 32 32
200 Guatemala 27594 T 32 32
201 Guatemala 27595 C 32 32
202 Guatemala 27596 C 32 32
203 Guatemala 27597 T 32 32
204 Guatemala 27598 G 32 32
205 Guatemala 27599 A 32 32
206 Guatemala 27600 C 32 32
207 Guatemala 27601 G 32 32
208 Guatemala 27602 G 32 32
209 Guatemala 27603 C 32 32
210 Guatemala 27604 G 32 32
211 Guatemala 27605 T 32 32
212 Guatemala 27606 A 32 32
213 Guatemala 27607 A 32 32
214 Guatemala 27608 A 32 32
215 Guatemala 27609 A 32 32
216 Guatemala 27610 C 32 32
217 Guatemala 27611 A 32 32
218 Guatemala 27612 C 32 32
219 Guatemala 27613 G 32 32
220 Guatemala 27614 T 32 32
221 Guatemala 27615 C 32 32
222 Guatemala 27616 T 32 32
223 Guatemala 27617 A 32 32
224 Guatemala 27618 T 32 32
225 Guatemala 27619 C 32 32
226 Guatemala 27620 A 32 32
227 Guatemala 27621 G 32 32
228 Guatemala 27622 T 32 32
229 Guatemala 27623 T 32 32
230 Guatemala 27624 A 32 32
231 Guatemala 27625 C 32 32
232 Guatemala 27626 G 32 32
233 Guatemala 27627 T 32 32
234 Guatemala 27628 G 32 32
235 Guatemala 27629 C 32 32
236 Guatemala 27630 C 32 32
237 Guatemala 27631 A 32 32
238 Guatemala 27632 G 32 32
239 Guatemala 27633 A 32 32
240 Guatemala 27634 T 32 32
241 Guatemala 27635 C T 32 31 Ser81Leu
242 Guatemala 27636 A 32 32
243 Guatemala 27637 G 32 32
244 Guatemala 27638 T 32 32
245 Guatemala 27639 T 32 32
246 Guatemala 27640 T 32 32
247 Guatemala 27641 C 32 32
248 Guatemala 27642 A 32 32
249 Guatemala 27643 C 32 32
250 Guatemala 27644 C 32 32
251 Guatemala 27645 T 32 32
252 Guatemala 27646 A 32 32
253 Guatemala 27647 A 32 32
254 Guatemala 27648 A 32 32
255 Guatemala 27649 C 32 32
256 Guatemala 27650 T 32 32
257 Guatemala 27651 G 32 32
258 Guatemala 27652 T 32 32
259 Guatemala 27653 T 32 32
260 Guatemala 27654 C 32 32
261 Guatemala 27655 A 32 32
262 Guatemala 27656 T 32 32
263 Guatemala 27657 C 32 32
264 Guatemala 27658 A 32 32
265 Guatemala 27659 G 32 32
266 Guatemala 27660 A 32 32
267 Guatemala 27661 C 32 32
268 Guatemala 27662 A 32 32
269 Guatemala 27663 A 32 32
270 Guatemala 27664 G 32 32
271 Guatemala 27665 A 32 32
272 Guatemala 27666 G 32 32
273 Guatemala 27667 G 32 32
274 Guatemala 27668 A 32 32
275 Guatemala 27669 A 32 32
276 Guatemala 27670 G 32 32
277 Guatemala 27671 T 32 32
278 Guatemala 27672 T 32 32
279 Guatemala 27673 C 32 32
280 Guatemala 27674 A 32 32
281 Guatemala 27675 A 32 32
282 Guatemala 27676 G 32 32
283 Guatemala 27677 A 32 32
284 Guatemala 27678 A 32 32
285 Guatemala 27679 C 32 32
286 Guatemala 27680 T 32 32
287 Guatemala 27681 T 32 32
288 Guatemala 27682 T 32 32
289 Guatemala 27683 A 32 32
290 Guatemala 27684 C 32 32
291 Guatemala 27685 T 32 32
292 Guatemala 27686 C 32 32
293 Guatemala 27687 T 32 32
294 Guatemala 27688 C 32 32
295 Guatemala 27689 C 32 32
296 Guatemala 27690 A 32 32
297 Guatemala 27691 A 32 32
298 Guatemala 27692 T 32 32
299 Guatemala 27693 T 32 32
300 Guatemala 27694 T 32 32
301 Guatemala 27695 T 32 32
302 Guatemala 27696 T 32 32
303 Guatemala 27697 C 32 32
304 Guatemala 27698 T 32 32
305 Guatemala 27699 T 32 32
306 Guatemala 27700 A 32 32
307 Guatemala 27701 T 32 32
308 Guatemala 27702 T 32 32
309 Guatemala 27703 G 32 32
310 Guatemala 27704 T 32 32
311 Guatemala 27705 T 32 32
312 Guatemala 27706 G 32 32
313 Guatemala 27707 C 32 32
314 Guatemala 27708 G 32 32
315 Guatemala 27709 G 32 32
316 Guatemala 27710 C 32 32
317 Guatemala 27711 A 32 32
318 Guatemala 27712 A 32 32
319 Guatemala 27713 T 32 32
320 Guatemala 27714 A 32 32
321 Guatemala 27715 G 32 32
322 Guatemala 27716 T 32 32
323 Guatemala 27717 G 32 32
324 Guatemala 27718 T 32 32
325 Guatemala 27719 T 32 32
326 Guatemala 27720 T 32 32
327 Guatemala 27721 A 32 32
328 Guatemala 27722 T 32 32
329 Guatemala 27723 A 32 32
330 Guatemala 27724 A 32 32
331 Guatemala 27725 C 32 32
332 Guatemala 27726 A 32 32
333 Guatemala 27727 C 32 32
334 Guatemala 27728 T 32 32
335 Guatemala 27729 T 32 32
336 Guatemala 27730 T 32 32
337 Guatemala 27731 G 32 32
338 Guatemala 27732 C 32 32
339 Guatemala 27733 T 32 32
340 Guatemala 27734 T 32 32
341 Guatemala 27735 C 32 32
342 Guatemala 27736 A 32 32
343 Guatemala 27737 C 32 32
344 Guatemala 27738 A 32 32
345 Guatemala 27739 C 32 32
346 Guatemala 27740 T 32 32
347 Guatemala 27741 C 32 32
348 Guatemala 27742 A 32 32
349 Guatemala 27743 A 32 32
350 Guatemala 27744 A 32 32
351 Guatemala 27745 A 32 32
352 Guatemala 27746 G 32 32
353 Guatemala 27747 A 32 32
354 Guatemala 27748 A 32 32
355 Guatemala 27749 A 32 32
356 Guatemala 27750 G 32 32
357 Guatemala 27751 A 32 32
358 Guatemala 27752 C 32 32
359 Guatemala 27753 A 32 32
360 Guatemala 27754 G 32 32
361 Guatemala 27755 A 32 32
362 Guatemala 27756 A 32 32
363 Guatemala 27757 T 32 32
364 Guatemala 27758 G 32 32
365 Guatemala 27759 A 32 32