National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q 1   15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Greece 27394 A 140 140
1 Greece 27395 T 140 140
2 Greece 27396 G 140 140
3 Greece 27397 A 140 140
4 Greece 27398 A 140 140
5 Greece 27399 A 140 140
6 Greece 27400 A 140 140
7 Greece 27401 T 140 140
8 Greece 27402 T 140 140
9 Greece 27403 A 140 140
10 Greece 27404 T 140 140
11 Greece 27405 T 140 140
12 Greece 27406 C 140 140
13 Greece 27407 T 140 140
14 Greece 27408 T 140 140
15 Greece 27409 T 140 140
16 Greece 27410 T 140 140
17 Greece 27411 C 140 140
18 Greece 27412 T 140 140
19 Greece 27413 T 140 140
20 Greece 27414 G 140 140
21 Greece 27415 G 140 140
22 Greece 27416 C 140 140
23 Greece 27417 A 140 140
24 Greece 27418 C 140 140
25 Greece 27419 T 140 140
26 Greece 27420 G 140 140
27 Greece 27421 A 140 140
28 Greece 27422 T 140 140
29 Greece 27423 A 140 140
30 Greece 27424 A 140 140
31 Greece 27425 C 140 140
32 Greece 27426 A 140 140
33 Greece 27427 C 140 140
34 Greece 27428 T 140 140
35 Greece 27429 C 140 140
36 Greece 27430 G 140 140
37 Greece 27431 C 140 140
38 Greece 27432 T 140 140
39 Greece 27433 A 140 140
40 Greece 27434 C 140 140
41 Greece 27435 T 140 140
42 Greece 27436 T 140 140
43 Greece 27437 G 140 140
44 Greece 27438 T 140 140
45 Greece 27439 G 140 140
46 Greece 27440 A 140 140
47 Greece 27441 G 140 140
48 Greece 27442 C 140 140
49 Greece 27443 T 140 140
50 Greece 27444 T 140 140
51 Greece 27445 T 140 140
52 Greece 27446 A 140 140
53 Greece 27447 T 140 140
54 Greece 27448 C 140 140
55 Greece 27449 A 140 140
56 Greece 27450 C 140 140
57 Greece 27451 T 140 140
58 Greece 27452 A 140 140
59 Greece 27453 C 140 140
60 Greece 27454 C 140 140
61 Greece 27455 A 140 140
62 Greece 27456 A 140 140
63 Greece 27457 G 140 140
64 Greece 27458 A 140 140
65 Greece 27459 G 140 140
66 Greece 27460 T 140 140
67 Greece 27461 G 140 140
68 Greece 27462 T 140 140
69 Greece 27463 G 140 140
70 Greece 27464 T 140 140
71 Greece 27465 T 140 140
72 Greece 27466 A 140 140
73 Greece 27467 G 140 140
74 Greece 27468 A 140 140
75 Greece 27469 G 140 140
76 Greece 27470 G 140 140
77 Greece 27471 T 140 140
78 Greece 27472 A 140 140
79 Greece 27473 C 140 140
80 Greece 27474 A 140 140
81 Greece 27475 A 140 140
82 Greece 27476 C 140 140
83 Greece 27477 A 140 140
84 Greece 27478 G 140 140
85 Greece 27479 T 140 140
86 Greece 27480 A 140 140
87 Greece 27481 C 140 140
88 Greece 27482 T 140 140
89 Greece 27483 T 140 140
90 Greece 27484 T 140 140
91 Greece 27485 T 140 140
92 Greece 27486 A 140 140
93 Greece 27487 A 140 140
94 Greece 27488 A 140 140
95 Greece 27489 A 140 140
96 Greece 27490 G 140 140
97 Greece 27491 A 140 140
98 Greece 27492 A 140 140
99 Greece 27493 C 140 140
100 Greece 27494 C 140 140
101 Greece 27495 T 140 140
102 Greece 27496 T 140 140
103 Greece 27497 G 140 140
104 Greece 27498 C 140 140
105 Greece 27499 T 140 140
106 Greece 27500 C 140 140
107 Greece 27501 T 140 140
108 Greece 27502 T 140 140
109 Greece 27503 C 140 140
110 Greece 27504 T 140 140
111 Greece 27505 G 140 140
112 Greece 27506 G 140 140
113 Greece 27507 A 140 140
114 Greece 27508 A 140 140
115 Greece 27509 C 140 140
116 Greece 27510 A 140 140
117 Greece 27511 T 140 140
118 Greece 27512 A 140 140
119 Greece 27513 C 140 140
120 Greece 27514 G 140 140
121 Greece 27515 A 140 140
122 Greece 27516 G 140 140
123 Greece 27517 G 140 140
124 Greece 27518 G 140 140
125 Greece 27519 C 140 140
126 Greece 27520 A 140 140
127 Greece 27521 A 140 140
128 Greece 27522 T 140 140
129 Greece 27523 T 140 140
130 Greece 27524 C 140 140
131 Greece 27525 A 140 140
132 Greece 27526 C 140 140
133 Greece 27527 C 140 140
134 Greece 27528 A 140 140
135 Greece 27529 T 140 140
136 Greece 27530 T 140 140
137 Greece 27531 T 140 140
138 Greece 27532 C 140 140
139 Greece 27533 A 139 139
140 Greece 27534 T 137 137
141 Greece 27535 C 137 137
142 Greece 27536 C 137 137
143 Greece 27537 T 137 137
144 Greece 27538 C 137 137
145 Greece 27539 T 137 137
146 Greece 27540 A 137 137
147 Greece 27541 G 137 137
148 Greece 27542 C 137 137
149 Greece 27543 T 137 137
150 Greece 27544 G 137 137
151 Greece 27545 A 137 137
152 Greece 27546 T 137 137
153 Greece 27547 A 137 137
154 Greece 27548 A 137 137
155 Greece 27549 C 137 137
156 Greece 27550 A 137 137
157 Greece 27551 A 137 137
158 Greece 27552 A 137 137
159 Greece 27553 T 137 137
160 Greece 27554 T 137 137
161 Greece 27555 T 137 137
162 Greece 27556 G 137 137
163 Greece 27557 C 137 137
164 Greece 27558 A 137 137
165 Greece 27559 C 137 137
166 Greece 27560 T 137 137
167 Greece 27561 G 137 137
168 Greece 27562 A 137 137
169 Greece 27563 C 137 137
170 Greece 27564 T 137 137
171 Greece 27565 T 137 137
172 Greece 27566 G 137 137
173 Greece 27567 C 137 137
174 Greece 27568 T 137 137
175 Greece 27569 T 137 137
176 Greece 27570 T 137 137
177 Greece 27571 A 137 137
178 Greece 27572 G 137 137
179 Greece 27573 C 137 137
180 Greece 27574 A 137 137
181 Greece 27575 C 137 137
182 Greece 27576 T 137 137
183 Greece 27577 C 137 137
184 Greece 27578 A 137 137
185 Greece 27579 A 137 137
186 Greece 27580 T 137 137
187 Greece 27581 T 137 137
188 Greece 27582 T 137 137
189 Greece 27583 G 137 137
190 Greece 27584 C 137 137
191 Greece 27585 T 137 137
192 Greece 27586 T 137 137
193 Greece 27587 T 137 137
194 Greece 27588 T 137 137
195 Greece 27589 G 137 137
196 Greece 27590 C 137 137
197 Greece 27591 T 137 137
198 Greece 27592 T 137 137
199 Greece 27593 G 137 137
200 Greece 27594 T 137 137
201 Greece 27595 C 137 137
202 Greece 27596 C 137 137
203 Greece 27597 T 137 137
204 Greece 27598 G 137 137
205 Greece 27599 A 137 137
206 Greece 27600 C 137 137
207 Greece 27601 G 137 137
208 Greece 27602 G 137 137
209 Greece 27603 C 137 137
210 Greece 27604 G 137 137
211 Greece 27605 T 137 136
212 Greece 27606 A 137 136
213 Greece 27607 A 137 136
214 Greece 27608 A 137 136
215 Greece 27609 A 137 136
216 Greece 27610 C 137 136
217 Greece 27611 A 137 136
218 Greece 27612 C 137 136
219 Greece 27613 G 137 136
220 Greece 27614 T 137 136
221 Greece 27615 C 137 136
222 Greece 27616 T 137 136
223 Greece 27617 A 137 136
224 Greece 27618 T 137 136
225 Greece 27619 C 137 136
226 Greece 27620 A 137 136
227 Greece 27621 G 137 136
228 Greece 27622 T 137 136
229 Greece 27623 T 137 137
230 Greece 27624 A 137 137
231 Greece 27625 C 137 137
232 Greece 27626 G 137 137
233 Greece 27627 T 137 137
234 Greece 27628 G 137 137
235 Greece 27629 C 137 137
236 Greece 27630 C 137 137
237 Greece 27631 A 137 137
238 Greece 27632 G 137 137
239 Greece 27633 A 137 137
240 Greece 27634 T 137 137
241 Greece 27635 C 137 137
242 Greece 27636 A 137 137
243 Greece 27637 G 137 137
244 Greece 27638 T 137 137
245 Greece 27639 T 137 137
246 Greece 27640 T 137 137
247 Greece 27641 C 137 137
248 Greece 27642 A 137 137
249 Greece 27643 C 137 137
250 Greece 27644 C 137 137
251 Greece 27645 T 137 137
252 Greece 27646 A 137 137
253 Greece 27647 A 137 137
254 Greece 27648 A 137 137
255 Greece 27649 C 136 136
256 Greece 27650 T 136 136
257 Greece 27651 G 136 136
258 Greece 27652 T 136 136
259 Greece 27653 T 136 136
260 Greece 27654 C 136 136
261 Greece 27655 A 136 136
262 Greece 27656 T 136 136
263 Greece 27657 C 136 136
264 Greece 27658 A 136 136
265 Greece 27659 G 136 136
266 Greece 27660 A 136 136
267 Greece 27661 C 136 136
268 Greece 27662 A 136 136
269 Greece 27663 A 136 136
270 Greece 27664 G 136 136
271 Greece 27665 A 136 136
272 Greece 27666 G 136 136
273 Greece 27667 G 136 136
274 Greece 27668 A 136 136
275 Greece 27669 A 136 136
276 Greece 27670 G 136 136
277 Greece 27671 T 136 136
278 Greece 27672 T 136 136
279 Greece 27673 C T 136 135 Gln94*
280 Greece 27674 A 136 136
281 Greece 27675 A 136 136
282 Greece 27676 G 136 136
283 Greece 27677 A 136 136
284 Greece 27678 A 136 136
285 Greece 27679 C 136 136
286 Greece 27680 T 136 136
287 Greece 27681 T 136 136
288 Greece 27682 T 136 136
289 Greece 27683 A 136 136
290 Greece 27684 C 136 136
291 Greece 27685 T 136 136
292 Greece 27686 C 136 136
293 Greece 27687 T 136 136
294 Greece 27688 C 136 136
295 Greece 27689 C 136 136
296 Greece 27690 A 136 136
297 Greece 27691 A 135 134
298 Greece 27692 T 135 134
299 Greece 27693 T 135 134
300 Greece 27694 T 135 134
301 Greece 27695 T 135 134
302 Greece 27696 T 135 134
303 Greece 27697 C 135 134
304 Greece 27698 T 135 134
305 Greece 27699 T 135 134
306 Greece 27700 A 135 134
307 Greece 27701 T 135 134
308 Greece 27702 T 135 135
309 Greece 27703 G 135 135
310 Greece 27704 T 135 135
311 Greece 27705 T 135 135
312 Greece 27706 G 135 135
313 Greece 27707 C 135 135
314 Greece 27708 G 135 135
315 Greece 27709 G 135 135
316 Greece 27710 C 135 135
317 Greece 27711 A 135 134
318 Greece 27712 A 135 134
319 Greece 27713 T 135 134
320 Greece 27714 A 135 134
321 Greece 27715 G 135 134
322 Greece 27716 T 135 134
323 Greece 27717 G 135 134
324 Greece 27718 T 135 134
325 Greece 27719 T 135 134
326 Greece 27720 T 135 134
327 Greece 27721 A 135 134
328 Greece 27722 T 135 134
329 Greece 27723 A 135 134
330 Greece 27724 A 135 134
331 Greece 27725 C 135 134
332 Greece 27726 A 135 134
333 Greece 27727 C 135 134
334 Greece 27728 T 135 134
335 Greece 27729 T 135 134
336 Greece 27730 T 135 134
337 Greece 27731 G 135 135
338 Greece 27732 C 135 135
339 Greece 27733 T 135 135
340 Greece 27734 T 135 135
341 Greece 27735 C 135 135
342 Greece 27736 A 135 135
343 Greece 27737 C 135 135
344 Greece 27738 A 135 135
345 Greece 27739 C 135 135
346 Greece 27740 T 135 135
347 Greece 27741 C 135 135
348 Greece 27742 A 135 135
349 Greece 27743 A 135 135
350 Greece 27744 A 135 135
351 Greece 27745 A 135 135
352 Greece 27746 G 135 135
353 Greece 27747 A 135 135
354 Greece 27748 A 135 135
355 Greece 27749 A 135 135
356 Greece 27750 G 135 135
357 Greece 27751 A 135 135
358 Greece 27752 C 135 135
359 Greece 27753 A 135 135
360 Greece 27754 G 135 135
361 Greece 27755 A 135 135
362 Greece 27756 A 135 135
363 Greece 27757 T 135 135
364 Greece 27758 G 135 135
365 Greece 27759 A 135 135