National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                   1  
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                   1                  
Q     15                                      
R     15                                      
S     21                   1                  
T     30                                      
V     24                                   1  
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Ghana 27394 A 114 114
1 Ghana 27395 T 114 114
2 Ghana 27396 G 114 114
3 Ghana 27397 A 114 114
4 Ghana 27398 A 114 114
5 Ghana 27399 A 114 114
6 Ghana 27400 A 114 114
7 Ghana 27401 T 114 114
8 Ghana 27402 T 114 114
9 Ghana 27403 A 114 114
10 Ghana 27404 T 114 114
11 Ghana 27405 T 114 114
12 Ghana 27406 C 114 114
13 Ghana 27407 T 114 114
14 Ghana 27408 T 114 114
15 Ghana 27409 T 114 114
16 Ghana 27410 T 114 114
17 Ghana 27411 C 114 114
18 Ghana 27412 T 114 114
19 Ghana 27413 T 114 114
20 Ghana 27414 G 114 114
21 Ghana 27415 G 114 114
22 Ghana 27416 C 114 114
23 Ghana 27417 A 114 114
24 Ghana 27418 C 114 114
25 Ghana 27419 T 114 114
26 Ghana 27420 G 114 114
27 Ghana 27421 A 114 114
28 Ghana 27422 T 114 114
29 Ghana 27423 A 114 114
30 Ghana 27424 A 114 114
31 Ghana 27425 C 114 114
32 Ghana 27426 A 114 114
33 Ghana 27427 C 114 114
34 Ghana 27428 T 114 114
35 Ghana 27429 C 114 114
36 Ghana 27430 G 114 114
37 Ghana 27431 C T 114 113 Ala13Val
38 Ghana 27432 T 114 114
39 Ghana 27433 A 114 114
40 Ghana 27434 C 114 114
41 Ghana 27435 T 114 114
42 Ghana 27436 T 114 114
43 Ghana 27437 G 114 114
44 Ghana 27438 T 114 114
45 Ghana 27439 G 114 114
46 Ghana 27440 A 114 114
47 Ghana 27441 G 114 114
48 Ghana 27442 C 114 114
49 Ghana 27443 T 114 114
50 Ghana 27444 T 114 114
51 Ghana 27445 T 114 114
52 Ghana 27446 A 114 114
53 Ghana 27447 T 114 114
54 Ghana 27448 C 114 114
55 Ghana 27449 A 114 114
56 Ghana 27450 C 114 114
57 Ghana 27451 T 114 114
58 Ghana 27452 A 114 114
59 Ghana 27453 C T 114 113 Tyr20Tyr
60 Ghana 27454 C 114 114
61 Ghana 27455 A 114 114
62 Ghana 27456 A 114 114
63 Ghana 27457 G 114 114
64 Ghana 27458 A 114 114
65 Ghana 27459 G 114 114
66 Ghana 27460 T 114 114
67 Ghana 27461 G 114 114
68 Ghana 27462 T 114 114
69 Ghana 27463 G 114 114
70 Ghana 27464 T 114 114
71 Ghana 27465 T 114 114
72 Ghana 27466 A 114 114
73 Ghana 27467 G 114 114
74 Ghana 27468 A 114 114
75 Ghana 27469 G 114 114
76 Ghana 27470 G 114 114
77 Ghana 27471 T 114 114
78 Ghana 27472 A 114 114
79 Ghana 27473 C 114 114
80 Ghana 27474 A 114 114
81 Ghana 27475 A 114 114
82 Ghana 27476 C 114 113
83 Ghana 27477 A 114 114
84 Ghana 27478 G 114 114
85 Ghana 27479 T 114 114
86 Ghana 27480 A 114 114
87 Ghana 27481 C 114 114
88 Ghana 27482 T 114 114
89 Ghana 27483 T 114 114
90 Ghana 27484 T 114 114
91 Ghana 27485 T 113 113
92 Ghana 27486 A 113 113
93 Ghana 27487 A 113 113
94 Ghana 27488 A 113 113
95 Ghana 27489 A 113 113
96 Ghana 27490 G 113 113
97 Ghana 27491 A 113 113
98 Ghana 27492 A 113 113
99 Ghana 27493 C 113 113
100 Ghana 27494 C 113 113
101 Ghana 27495 T 113 113
102 Ghana 27496 T 113 113
103 Ghana 27497 G 113 113
104 Ghana 27498 C 113 113
105 Ghana 27499 T 113 113
106 Ghana 27500 C 113 113
107 Ghana 27501 T 113 113
108 Ghana 27502 T 113 113
109 Ghana 27503 C 113 113
110 Ghana 27504 T 113 113
111 Ghana 27505 G 113 113
112 Ghana 27506 G 112 112
113 Ghana 27507 A 112 112
114 Ghana 27508 A 112 112
115 Ghana 27509 C 112 112
116 Ghana 27510 A 112 112
117 Ghana 27511 T 112 112
118 Ghana 27512 A 80 80
119 Ghana 27513 C 80 80
120 Ghana 27514 G 80 80
121 Ghana 27515 A 80 80
122 Ghana 27516 G 80 80
123 Ghana 27517 G 80 80
124 Ghana 27518 G 80 80
125 Ghana 27519 C 79 79
126 Ghana 27520 A 79 79
127 Ghana 27521 A 79 79
128 Ghana 27522 T 79 79
129 Ghana 27523 T 79 79
130 Ghana 27524 C 78 78
131 Ghana 27525 A 78 78
132 Ghana 27526 C 72 70
133 Ghana 27527 C 70 68
134 Ghana 27528 A 70 68
135 Ghana 27529 T 70 68
136 Ghana 27530 T 70 68
137 Ghana 27531 T 70 68
138 Ghana 27532 C 70 68
139 Ghana 27533 A 70 68
140 Ghana 27534 T 69 69
141 Ghana 27535 C 69 69
142 Ghana 27536 C 69 69
143 Ghana 27537 T 69 69
144 Ghana 27538 C 69 69
145 Ghana 27539 T 69 69
146 Ghana 27540 A 69 69
147 Ghana 27541 G 69 69
148 Ghana 27542 C 69 69
149 Ghana 27543 T 69 69
150 Ghana 27544 G 69 69
151 Ghana 27545 A 69 69
152 Ghana 27546 T 69 69
153 Ghana 27547 A 69 69
154 Ghana 27548 A 69 69
155 Ghana 27549 C 69 69
156 Ghana 27550 A 69 69
157 Ghana 27551 A 69 69
158 Ghana 27552 A 69 69
159 Ghana 27553 T 69 69
160 Ghana 27554 T 69 69
161 Ghana 27555 T 69 69
162 Ghana 27556 G 69 69
163 Ghana 27557 C 69 69
164 Ghana 27558 A 69 69
165 Ghana 27559 C 69 69
166 Ghana 27560 T 69 69
167 Ghana 27561 G 69 69
168 Ghana 27562 A 69 69
169 Ghana 27563 C 69 69
170 Ghana 27564 T 69 69
171 Ghana 27565 T 69 69
172 Ghana 27566 G 69 69
173 Ghana 27567 C 69 69
174 Ghana 27568 T 69 69
175 Ghana 27569 T 69 69
176 Ghana 27570 T 69 69
177 Ghana 27571 A 68 68
178 Ghana 27572 G 68 68
179 Ghana 27573 C 68 68
180 Ghana 27574 A 68 68
181 Ghana 27575 C 68 68
182 Ghana 27576 T 68 68
183 Ghana 27577 C 68 68
184 Ghana 27578 A 68 68
185 Ghana 27579 A 68 68
186 Ghana 27580 T 68 68
187 Ghana 27581 T 68 68
188 Ghana 27582 T 68 68
189 Ghana 27583 G 68 68
190 Ghana 27584 C 68 68
191 Ghana 27585 T 68 68
192 Ghana 27586 T 68 68
193 Ghana 27587 T 68 67
194 Ghana 27588 T 68 67
195 Ghana 27589 G 68 68
196 Ghana 27590 C 68 68
197 Ghana 27591 T 68 68
198 Ghana 27592 T 68 68
199 Ghana 27593 G 68 68
200 Ghana 27594 T 68 68
201 Ghana 27595 C 68 68
202 Ghana 27596 C 68 68
203 Ghana 27597 T 68 68
204 Ghana 27598 G 68 68
205 Ghana 27599 A 68 68
206 Ghana 27600 C 68 68
207 Ghana 27601 G 68 68
208 Ghana 27602 G 68 68
209 Ghana 27603 C 68 68
210 Ghana 27604 G 68 68
211 Ghana 27605 T 68 68
212 Ghana 27606 A 68 68
213 Ghana 27607 A 68 68
214 Ghana 27608 A 68 68
215 Ghana 27609 A 68 68
216 Ghana 27610 C 68 68
217 Ghana 27611 A 68 68
218 Ghana 27612 C 68 68
219 Ghana 27613 G 68 68
220 Ghana 27614 T 68 68
221 Ghana 27615 C T 68 66 Val74Val
222 Ghana 27616 T 68 68
223 Ghana 27617 A 68 68
224 Ghana 27618 T 68 68
225 Ghana 27619 C 68 68
226 Ghana 27620 A 68 68
227 Ghana 27621 G 68 68
228 Ghana 27622 T 68 68
229 Ghana 27623 T 68 68
230 Ghana 27624 A 68 68
231 Ghana 27625 C 68 68
232 Ghana 27626 G 68 68
233 Ghana 27627 T 68 68
234 Ghana 27628 G 68 68
235 Ghana 27629 C 68 68
236 Ghana 27630 C 68 68
237 Ghana 27631 A 68 68
238 Ghana 27632 G 68 68
239 Ghana 27633 A 68 68
240 Ghana 27634 T 68 68
241 Ghana 27635 C 68 68
242 Ghana 27636 A 68 68
243 Ghana 27637 G 68 68
244 Ghana 27638 T 68 68
245 Ghana 27639 T 68 68
246 Ghana 27640 T 68 68
247 Ghana 27641 C T 68 67 Ser83Leu
248 Ghana 27642 A 68 68
249 Ghana 27643 C 68 68
250 Ghana 27644 C 68 68
251 Ghana 27645 T 68 68
252 Ghana 27646 A 68 68
253 Ghana 27647 A 68 68
254 Ghana 27648 A 68 68
255 Ghana 27649 C 68 68
256 Ghana 27650 T 68 68
257 Ghana 27651 G 68 68
258 Ghana 27652 T 68 68
259 Ghana 27653 T 68 68
260 Ghana 27654 C 68 68
261 Ghana 27655 A 68 68
262 Ghana 27656 T 68 68
263 Ghana 27657 C 68 68
264 Ghana 27658 A 68 68
265 Ghana 27659 G 68 68
266 Ghana 27660 A 68 68
267 Ghana 27661 C 68 68
268 Ghana 27662 A 68 68
269 Ghana 27663 A 68 68
270 Ghana 27664 G 68 68
271 Ghana 27665 A 68 68
272 Ghana 27666 G 68 68
273 Ghana 27667 G 68 68
274 Ghana 27668 A 68 68
275 Ghana 27669 A 68 68
276 Ghana 27670 G 68 68
277 Ghana 27671 T 68 68
278 Ghana 27672 T 68 68
279 Ghana 27673 C 68 68
280 Ghana 27674 A 68 68
281 Ghana 27675 A 68 68
282 Ghana 27676 G 68 68
283 Ghana 27677 A 68 68
284 Ghana 27678 A 68 68
285 Ghana 27679 C 68 68
286 Ghana 27680 T 68 68
287 Ghana 27681 T 68 68
288 Ghana 27682 T 68 68
289 Ghana 27683 A 68 68
290 Ghana 27684 C 68 68
291 Ghana 27685 T 68 68
292 Ghana 27686 C 68 68
293 Ghana 27687 T 68 68
294 Ghana 27688 C 68 68
295 Ghana 27689 C T 68 67 Pro99Leu
296 Ghana 27690 A 68 68
297 Ghana 27691 A 68 68
298 Ghana 27692 T 68 68
299 Ghana 27693 T 68 68
300 Ghana 27694 T 68 68
301 Ghana 27695 T 68 68
302 Ghana 27696 T 68 68
303 Ghana 27697 C 68 68
304 Ghana 27698 T 68 68
305 Ghana 27699 T 68 68
306 Ghana 27700 A 68 68
307 Ghana 27701 T 68 68
308 Ghana 27702 T 68 68
309 Ghana 27703 G 68 68
310 Ghana 27704 T 68 68
311 Ghana 27705 T 68 68
312 Ghana 27706 G 68 68
313 Ghana 27707 C 68 68
314 Ghana 27708 G 68 68
315 Ghana 27709 G 68 68
316 Ghana 27710 C 68 68
317 Ghana 27711 A 68 68
318 Ghana 27712 A 68 67
319 Ghana 27713 T 68 67
320 Ghana 27714 A 68 67
321 Ghana 27715 G 68 67
322 Ghana 27716 T 68 67
323 Ghana 27717 G 68 67
324 Ghana 27718 T 68 68
325 Ghana 27719 T 68 68
326 Ghana 27720 T 68 68
327 Ghana 27721 A 68 66
328 Ghana 27722 T 68 66
329 Ghana 27723 A 67 65
330 Ghana 27724 A 67 65
331 Ghana 27725 C 67 65
332 Ghana 27726 A 67 65
333 Ghana 27727 C 67 65
334 Ghana 27728 T 67 65
335 Ghana 27729 T 67 67
336 Ghana 27730 T 67 67
337 Ghana 27731 G 67 67
338 Ghana 27732 C 67 67
339 Ghana 27733 T 67 67
340 Ghana 27734 T 67 67
341 Ghana 27735 C 67 67
342 Ghana 27736 A 67 67
343 Ghana 27737 C 67 67
344 Ghana 27738 A 67 67
345 Ghana 27739 C 67 67
346 Ghana 27740 T 67 67
347 Ghana 27741 C 67 67
348 Ghana 27742 A 67 67
349 Ghana 27743 A 67 67
350 Ghana 27744 A 67 67
351 Ghana 27745 A 67 67
352 Ghana 27746 G 67 67
353 Ghana 27747 A 67 67
354 Ghana 27748 A 67 67
355 Ghana 27749 A 67 67
356 Ghana 27750 G 67 67
357 Ghana 27751 A 66 66
358 Ghana 27752 C 66 66
359 Ghana 27753 A 66 66
360 Ghana 27754 G 66 66
361 Ghana 27755 A 66 66
362 Ghana 27756 A 66 66
363 Ghana 27757 T 66 66
364 Ghana 27758 G 66 66
365 Ghana 27759 A 66 66