National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     369                                      
?                                            
A     27 3                             3 1 2  
C     18   1                         1        
D     6     2     1                          
E 2   24     1 1   1                       1  
F     30         2     3   1                  
G     11 1 1   1   3                 1     1  
H     9             2                       1
I     25               1   1               3  
K     21                 1                    
L     45         1     1   5     2 1          
M     6               1                      
N     6                       2              
P     18                   1     1     3      
Q 1   15             1   1 1                  
R     15   1           2             2 1 1    
S     21 2       1         1     1     2      
T     30 1             6       1         1    
V     24 1       3     2   2               2  
Y     15                                     2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Germany 27394 A 4443 4443
1 Germany 27395 T 4443 4443
2 Germany 27396 G T 4443 4441 Met1?
3 Germany 27397 A 4443 4443
4 Germany 27398 A 4456 4456
5 Germany 27399 A 4456 4456
6 Germany 27400 A 4456 4456
7 Germany 27401 T 4456 4456
8 Germany 27402 T 4456 4456
9 Germany 27403 A 4456 4456
10 Germany 27404 T 4456 4456
11 Germany 27405 T 4456 4456
12 Germany 27406 C 4456 4456
13 Germany 27407 T 4456 4456
14 Germany 27408 T 4456 4456
15 Germany 27409 T C,A 4456 4432 Phe6Leu-p.Phe6Ile
16 Germany 27410 T 4456 4456
17 Germany 27411 C 4456 4456
18 Germany 27412 T 4456 4456
19 Germany 27413 T 4456 4456
20 Germany 27414 G 4456 4456
21 Germany 27415 G T,A 4456 4444 Ala8Ser-p.Ala8Thr
22 Germany 27416 C T 4456 4455 Ala8Val
23 Germany 27417 A 4456 4456
24 Germany 27418 C 4456 4456
25 Germany 27419 T 4456 4456
26 Germany 27420 G 4457 4457
27 Germany 27421 A G 4457 4456 Ile10Val
28 Germany 27422 T 4457 4457
29 Germany 27423 A 4457 4457
30 Germany 27424 A G 4457 4455 Thr11Ala
31 Germany 27425 C T 4457 4456 Thr11Ile
32 Germany 27426 A 4457 4457
33 Germany 27427 C T 4457 4453 Leu12Phe
34 Germany 27428 T C 4457 4455 Leu12Pro
35 Germany 27429 C 4457 4457
36 Germany 27430 G 4457 4457
37 Germany 27431 C 4457 4457
38 Germany 27432 T 4457 4457
39 Germany 27433 A 4457 4457
40 Germany 27434 C T,A 4457 4440 Thr14Ile-p.Thr14Asn
41 Germany 27435 T 4457 4457
42 Germany 27436 T 4457 4457
43 Germany 27437 G 4457 4457
44 Germany 27438 T 4457 4456
45 Germany 27439 G 4457 4456
46 Germany 27440 A 4457 4456
47 Germany 27441 G 4457 4456
48 Germany 27442 C 4457 4456
49 Germany 27443 T 4457 4456
50 Germany 27444 T 4457 4456
51 Germany 27445 T 4457 4456
52 Germany 27446 A 4457 4456
53 Germany 27447 T 4457 4456
54 Germany 27448 C 4457 4456
55 Germany 27449 A 4457 4456
56 Germany 27450 C 4457 4456
57 Germany 27451 T 4457 4456
58 Germany 27452 A 4462 4461
59 Germany 27453 C 4462 4461
60 Germany 27454 C 4462 4461
61 Germany 27455 A 4462 4461
62 Germany 27456 A 4462 4460
63 Germany 27457 G 4462 4460
64 Germany 27458 A 4462 4460
65 Germany 27459 G 4462 4461
66 Germany 27460 T 4462 4461
67 Germany 27461 G 4462 4461
68 Germany 27462 T 4462 4461
69 Germany 27463 G T,A 4462 4457 Val24Phe-p.Val24Ile
70 Germany 27464 T 4462 4461
71 Germany 27465 T 4462 4461
72 Germany 27466 A 4462 4461
73 Germany 27467 G 4462 4461
74 Germany 27468 A 4462 4461
75 Germany 27469 G 4462 4461
76 Germany 27470 G 4462 4460
77 Germany 27471 T 4462 4460
78 Germany 27472 A 4464 4462
79 Germany 27473 C 4465 4463
80 Germany 27474 A 4465 4463
81 Germany 27475 A 4465 4463
82 Germany 27476 C T 4470 4466 Thr28Ile
83 Germany 27477 A 4470 4470
84 Germany 27478 G T 4470 4456 Val29Leu
85 Germany 27479 T 4470 4470
86 Germany 27480 A 4470 4470
87 Germany 27481 C 4470 4470
88 Germany 27482 T 4470 4470
89 Germany 27483 T 4470 4470
90 Germany 27484 T C 4457 4420 Leu31Leu
91 Germany 27485 T 4457 4422
92 Germany 27486 A 4457 4422
93 Germany 27487 A 4457 4424
94 Germany 27488 A 4459 4458
95 Germany 27489 A 4459 4458
96 Germany 27490 G 4459 4458
97 Germany 27491 A 4459 4458
98 Germany 27492 A 4459 4458
99 Germany 27493 C T 4459 4449 Pro34Ser
100 Germany 27494 C 4459 4458
101 Germany 27495 T 4459 4457
102 Germany 27496 T 4459 4457
103 Germany 27497 G 4459 4457
104 Germany 27498 C T 4459 4457 Cys35Cys
105 Germany 27499 T 4459 4458
106 Germany 27500 C 4459 4458
107 Germany 27501 T 4459 4458
108 Germany 27502 T 4459 4458
109 Germany 27503 C 4459 4458
110 Germany 27504 T A,C 4459 4453 Ser37Ser-p.Ser37Ser
111 Germany 27505 G C 4459 4457 Gly38Arg
112 Germany 27506 G T,C,A 4459 4440 Gly38Ala-p.Gly38Glu
113 Germany 27507 A C,T 4459 4455 Gly38Gly-p.Gly38Gly
114 Germany 27508 A 4459 4458
115 Germany 27509 C T 4459 4452 Thr39Ile
116 Germany 27510 A 4459 4458
117 Germany 27511 T 4459 4458
118 Germany 27512 A 4419 4416
119 Germany 27513 C T 4309 4302 Tyr40Tyr
120 Germany 27514 G 4307 4304
121 Germany 27515 A 4307 4304
122 Germany 27516 G 4307 4305
123 Germany 27517 G T 4307 4304 Gly42Cys
124 Germany 27518 G 4305 4304
125 Germany 27519 C 4305 4304
126 Germany 27520 A 4304 4303
127 Germany 27521 A 4304 4303
128 Germany 27522 T C 4304 4301 Asn43Asn
129 Germany 27523 T G 4304 4298 Ser44Ala
130 Germany 27524 C 4304 4302
131 Germany 27525 A 4302 4301
132 Germany 27526 C T 4302 4300 Pro45Ser
133 Germany 27527 C T 4300 4296 Pro45Leu
134 Germany 27528 A G 4289 4285 Pro45Pro
135 Germany 27529 T 4288 4284
136 Germany 27530 T 4288 4284
137 Germany 27531 T C 4288 4281 Phe46Phe
138 Germany 27532 C T 4288 4279 His47Tyr
139 Germany 27533 A 4288 4284
140 Germany 27534 T C 4262 4257 His47His
141 Germany 27535 C 4260 4256
142 Germany 27536 C 4260 4256
143 Germany 27537 T 4260 4253
144 Germany 27538 C 4260 4253
145 Germany 27539 T 4260 4253
146 Germany 27540 A T 4260 4252 Leu49Leu
147 Germany 27541 G T 4260 4249 Ala50Ser
148 Germany 27542 C 4259 4252
149 Germany 27543 T 4259 4252
150 Germany 27544 G 4259 4253
151 Germany 27545 A 4259 4253
152 Germany 27546 T C 4259 4252 Asp51Asp
153 Germany 27547 A 4259 4254
154 Germany 27548 A 4257 4252
155 Germany 27549 C T 4257 4250 Asn52Asn
156 Germany 27550 A 4256 4250
157 Germany 27551 A 4256 4252
158 Germany 27552 A 4256 4252
159 Germany 27553 T 4256 4253
160 Germany 27554 T 4256 4253
161 Germany 27555 T 4256 4253
162 Germany 27556 G 4256 4253
163 Germany 27557 C 4256 4253
164 Germany 27558 A 4256 4254
165 Germany 27559 C 4256 4254
166 Germany 27560 T A 4256 4252 Leu56Gln
167 Germany 27561 G T 4256 4252 Leu56Leu
168 Germany 27562 A 4256 4254
169 Germany 27563 C 4256 4254
170 Germany 27564 T 4256 4254
171 Germany 27565 T 4256 4252
172 Germany 27566 G 4256 4252
173 Germany 27567 C 4255 4251
174 Germany 27568 T 4253 4249
175 Germany 27569 T 4253 4250
176 Germany 27570 T C 4253 4249 Phe59Phe
177 Germany 27571 A 4253 4250
178 Germany 27572 G 4253 4250
179 Germany 27573 C 4253 4250
180 Germany 27574 A 4251 4248
181 Germany 27575 C T 4251 4246 Thr61Ile
182 Germany 27576 T 4250 4247
183 Germany 27577 C T 4250 4246 Gln62*
184 Germany 27578 A 4250 4248
185 Germany 27579 A 4250 4248
186 Germany 27580 T A 4250 4246 Phe63Ile
187 Germany 27581 T 4250 4246
188 Germany 27582 T 4250 4246
189 Germany 27583 G T 4250 4245 Ala64Ser
190 Germany 27584 C 4250 4245
191 Germany 27585 T 4250 4246
192 Germany 27586 T 4250 4248
193 Germany 27587 T 4250 4248
194 Germany 27588 T 4250 4249
195 Germany 27589 G 4250 4248
196 Germany 27590 C 4250 4249
197 Germany 27591 T C 4250 4247 Ala66Ala
198 Germany 27592 T C 4250 4238 Cys67Arg
199 Germany 27593 G 4250 4244
200 Germany 27594 T 4250 4244
201 Germany 27595 C 4250 4244
202 Germany 27596 C 4250 4242
203 Germany 27597 T 4260 4254
204 Germany 27598 G 4260 4254
205 Germany 27599 A G 4260 4251 Asp69Gly
206 Germany 27600 C T 4259 4249 Asp69Asp
207 Germany 27601 G 4253 4245
208 Germany 27602 G 4253 4244
209 Germany 27603 C T 4252 4242 Gly70Gly
210 Germany 27604 G A,T 4252 4239 Val71Ile-p.Val71Leu
211 Germany 27605 T 4252 4247
212 Germany 27606 A T,G 4252 4244 Val71Val-p.Val71Val
213 Germany 27607 A 4252 4247
214 Germany 27608 A 4252 4247
215 Germany 27609 A 4252 4247
216 Germany 27610 C 4252 4247
217 Germany 27611 A 4253 4248
218 Germany 27612 C T 4253 4247 His73His
219 Germany 27613 G 4253 4248
220 Germany 27614 T 4253 4247
221 Germany 27615 C 4242 4234
222 Germany 27616 T 4241 4233
223 Germany 27617 A 4241 4234
224 Germany 27618 T 4241 4236
225 Germany 27619 C 4241 4236
226 Germany 27620 A T 4241 4235 Gln76Leu
227 Germany 27621 G 4241 4236
228 Germany 27622 T 4241 4236
229 Germany 27623 T 4241 4236
230 Germany 27624 A 4241 4236
231 Germany 27625 C T 4241 4232 Arg78Cys
232 Germany 27626 G 4241 4236
233 Germany 27627 T A 4240 4234 Arg78Arg
234 Germany 27628 G 4240 4236
235 Germany 27629 C 4240 4236
236 Germany 27630 C T 4240 4232 Ala79Ala
237 Germany 27631 A 4240 4236
238 Germany 27632 G T,C 4240 4222 Arg80Ile-p.Arg80Thr
239 Germany 27633 A 4241 4238
240 Germany 27634 T 4243 4240
241 Germany 27635 C T 4243 4239 Ser81Leu
242 Germany 27636 A 4243 4240
243 Germany 27637 G 4243 4240
244 Germany 27638 T 4243 4240
245 Germany 27639 T 4242 4239
246 Germany 27640 T C 4242 4237 Ser83Pro
247 Germany 27641 C 4242 4240
248 Germany 27642 A 4242 4240
249 Germany 27643 C 4242 4240
250 Germany 27644 C 4242 4240
251 Germany 27645 T 4242 4240
252 Germany 27646 A 4242 4238
253 Germany 27647 A 4242 4238
254 Germany 27648 A G 4242 4236 Lys85Lys
255 Germany 27649 C 4242 4237
256 Germany 27650 T 4242 4238
257 Germany 27651 G T 4242 4238 Leu86Leu
258 Germany 27652 T A 4242 4238 Phe87Ile
259 Germany 27653 T 4242 4240
260 Germany 27654 C 4242 4240
261 Germany 27655 A G 4242 4239 Ile88Val
262 Germany 27656 T 4242 4240
263 Germany 27657 C T 4242 4235 Ile88Ile
264 Germany 27658 A 4242 4239
265 Germany 27659 G T 4242 4231 Arg89Ile
266 Germany 27660 A C,G 4242 4223 Arg89Ser-p.Arg89Arg
267 Germany 27661 C 4242 4241
268 Germany 27662 A 4242 4240
269 Germany 27663 A 4242 4241
270 Germany 27664 G 4242 4240
271 Germany 27665 A 4242 4240
272 Germany 27666 G T,A 4242 4237 Glu91Asp-p.Glu91Glu
273 Germany 27667 G 4242 4240
274 Germany 27668 A G,T 4241 4228 Glu92Gly-p.Glu92Val
275 Germany 27669 A 4241 4239
276 Germany 27670 G T 4241 4237 Val93Phe
277 Germany 27671 T 4241 4239
278 Germany 27672 T 4241 4239
279 Germany 27673 C A 4241 4232 Gln94Lys
280 Germany 27674 A 4241 4238
281 Germany 27675 A C 4241 4236 Gln94His
282 Germany 27676 G T 4241 4237 Glu95*
283 Germany 27677 A 4241 4238
284 Germany 27678 A 4241 4238
285 Germany 27679 C 4241 4238
286 Germany 27680 T 4241 4238
287 Germany 27681 T 4241 4238
288 Germany 27682 T 4241 4238
289 Germany 27683 A 4241 4238
290 Germany 27684 C T 4241 4237 Tyr97Tyr
291 Germany 27685 T G 4240 4236 Ser98Ala
292 Germany 27686 C T 4240 4234 Ser98Phe
293 Germany 27687 T 4240 4237
294 Germany 27688 C T 4239 4234 Pro99Ser
295 Germany 27689 C 4239 4236
296 Germany 27690 A 4239 4238
297 Germany 27691 A C 4239 4237 Ile100Leu
298 Germany 27692 T 4239 4239
299 Germany 27693 T 4239 4239
300 Germany 27694 T 4239 4239
301 Germany 27695 T 4239 4238
302 Germany 27696 T 4239 4238
303 Germany 27697 C 4238 4236
304 Germany 27698 T C 4238 4236 Leu102Pro
305 Germany 27699 T 4238 4237
306 Germany 27700 A G 4238 4234 Ile103Val
307 Germany 27701 T 4238 4238
308 Germany 27702 T 4238 4238
309 Germany 27703 G T 4238 4235 Val104Phe
310 Germany 27704 T 4238 4236
311 Germany 27705 T 4238 4236
312 Germany 27706 G 4238 4236
313 Germany 27707 C T 4236 4228 Ala105Val
314 Germany 27708 G A 4236 4232 Ala105Ala
315 Germany 27709 G 4235 4233
316 Germany 27710 C 4234 4231
317 Germany 27711 A 4234 4230
318 Germany 27712 A 4234 4230
319 Germany 27713 T 4234 4229
320 Germany 27714 A 4234 4230
321 Germany 27715 G 4234 4230
322 Germany 27716 T C 4232 4227 Val108Ala
323 Germany 27717 G 4232 4229
324 Germany 27718 T 4232 4229
325 Germany 27719 T 4232 4229
326 Germany 27720 T 4234 4233
327 Germany 27721 A 4234 4233
328 Germany 27722 T 4234 4233
329 Germany 27723 A 4234 4233
330 Germany 27724 A 4234 4233
331 Germany 27725 C 4234 4233
332 Germany 27726 A G 4234 4232 Thr111Thr
333 Germany 27727 C 4234 4233
334 Germany 27728 T 4233 4232
335 Germany 27729 T 4233 4232
336 Germany 27730 T 4233 4232
337 Germany 27731 G 4233 4233
338 Germany 27732 C 4233 4233
339 Germany 27733 T 4231 4231
340 Germany 27734 T 4231 4231
341 Germany 27735 C 4231 4230
342 Germany 27736 A 4231 4231
343 Germany 27737 C 4231 4231
344 Germany 27738 A 4231 4231
345 Germany 27739 C A 4231 4230 Leu116Ile
346 Germany 27740 T 4231 4231
347 Germany 27741 C T 4231 4229 Leu116Leu
348 Germany 27742 A 4231 4231
349 Germany 27743 A 4231 4231
350 Germany 27744 A 4231 4231
351 Germany 27745 A 4231 4231
352 Germany 27746 G 4231 4231
353 Germany 27747 A 4231 4231
354 Germany 27748 A 4231 4231
355 Germany 27749 A 4231 4231
356 Germany 27750 G 4230 4230
357 Germany 27751 A 4230 4230
358 Germany 27752 C T 4230 4224 Thr120Ile
359 Germany 27753 A 4229 4229
360 Germany 27754 G T 4229 4227 Glu121*
361 Germany 27755 A 4229 4228
362 Germany 27756 A 4229 4229
363 Germany 27757 T 4229 4229
364 Germany 27758 G 4229 4229
365 Germany 27759 A 4229 4229