National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                 1    
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Georgia 27394 A 26 25
1 Georgia 27395 T 26 25
2 Georgia 27396 G 26 25
3 Georgia 27397 A 26 25
4 Georgia 27398 A 26 25
5 Georgia 27399 A 26 25
6 Georgia 27400 A 26 25
7 Georgia 27401 T 26 25
8 Georgia 27402 T 26 25
9 Georgia 27403 A 26 25
10 Georgia 27404 T 26 25
11 Georgia 27405 T 26 25
12 Georgia 27406 C 26 25
13 Georgia 27407 T 26 25
14 Georgia 27408 T 26 25
15 Georgia 27409 T 26 25
16 Georgia 27410 T 26 25
17 Georgia 27411 C 26 25
18 Georgia 27412 T 26 25
19 Georgia 27413 T 26 25
20 Georgia 27414 G 26 25
21 Georgia 27415 G 26 25
22 Georgia 27416 C 26 25
23 Georgia 27417 A 26 25
24 Georgia 27418 C 26 25
25 Georgia 27419 T 26 25
26 Georgia 27420 G 26 25
27 Georgia 27421 A 26 25
28 Georgia 27422 T 26 25
29 Georgia 27423 A 26 25
30 Georgia 27424 A 26 25
31 Georgia 27425 C 26 25
32 Georgia 27426 A 26 25
33 Georgia 27427 C 26 25
34 Georgia 27428 T 26 25
35 Georgia 27429 C 26 25
36 Georgia 27430 G A 26 23 Ala13Thr
37 Georgia 27431 C 26 25
38 Georgia 27432 T 26 25
39 Georgia 27433 A 26 25
40 Georgia 27434 C 26 25
41 Georgia 27435 T 26 25
42 Georgia 27436 T 26 25
43 Georgia 27437 G 26 25
44 Georgia 27438 T 26 25
45 Georgia 27439 G 26 25
46 Georgia 27440 A 26 25
47 Georgia 27441 G 26 25
48 Georgia 27442 C 26 25
49 Georgia 27443 T 26 25
50 Georgia 27444 T 26 25
51 Georgia 27445 T 26 25
52 Georgia 27446 A 26 25
53 Georgia 27447 T 26 25
54 Georgia 27448 C 26 25
55 Georgia 27449 A 26 25
56 Georgia 27450 C 26 25
57 Georgia 27451 T 26 25
58 Georgia 27452 A 26 25
59 Georgia 27453 C 26 25
60 Georgia 27454 C 26 25
61 Georgia 27455 A 26 25
62 Georgia 27456 A 26 25
63 Georgia 27457 G 26 25
64 Georgia 27458 A 26 25
65 Georgia 27459 G 26 25
66 Georgia 27460 T 26 25
67 Georgia 27461 G 26 25
68 Georgia 27462 T 26 25
69 Georgia 27463 G 26 25
70 Georgia 27464 T 26 25
71 Georgia 27465 T 26 25
72 Georgia 27466 A 26 25
73 Georgia 27467 G 26 25
74 Georgia 27468 A 26 25
75 Georgia 27469 G 26 25
76 Georgia 27470 G 26 25
77 Georgia 27471 T 26 25
78 Georgia 27472 A 26 25
79 Georgia 27473 C 26 25
80 Georgia 27474 A 26 25
81 Georgia 27475 A 26 25
82 Georgia 27476 C 26 25
83 Georgia 27477 A 26 25
84 Georgia 27478 G 26 25
85 Georgia 27479 T 26 25
86 Georgia 27480 A 26 25
87 Georgia 27481 C 26 25
88 Georgia 27482 T 26 25
89 Georgia 27483 T 26 25
90 Georgia 27484 T 26 25
91 Georgia 27485 T 26 25
92 Georgia 27486 A 26 25
93 Georgia 27487 A 26 25
94 Georgia 27488 A 26 25
95 Georgia 27489 A 26 25
96 Georgia 27490 G 26 25
97 Georgia 27491 A 26 25
98 Georgia 27492 A 26 25
99 Georgia 27493 C 26 25
100 Georgia 27494 C 26 25
101 Georgia 27495 T 26 25
102 Georgia 27496 T 26 25
103 Georgia 27497 G 26 25
104 Georgia 27498 C 26 25
105 Georgia 27499 T 26 25
106 Georgia 27500 C 26 25
107 Georgia 27501 T 26 25
108 Georgia 27502 T 26 25
109 Georgia 27503 C 26 25
110 Georgia 27504 T 26 25
111 Georgia 27505 G 26 25
112 Georgia 27506 G 26 25
113 Georgia 27507 A 26 25
114 Georgia 27508 A 26 25
115 Georgia 27509 C 26 25
116 Georgia 27510 A 26 25
117 Georgia 27511 T 26 25
118 Georgia 27512 A 26 25
119 Georgia 27513 C 26 25
120 Georgia 27514 G 26 25
121 Georgia 27515 A 26 25
122 Georgia 27516 G 26 25
123 Georgia 27517 G 26 25
124 Georgia 27518 G 26 25
125 Georgia 27519 C 26 25
126 Georgia 27520 A 26 25
127 Georgia 27521 A 26 25
128 Georgia 27522 T 26 25
129 Georgia 27523 T 26 25
130 Georgia 27524 C 26 25
131 Georgia 27525 A 26 25
132 Georgia 27526 C 26 25
133 Georgia 27527 C 26 25
134 Georgia 27528 A 26 25
135 Georgia 27529 T 26 25
136 Georgia 27530 T 26 25
137 Georgia 27531 T 26 25
138 Georgia 27532 C 26 25
139 Georgia 27533 A 26 25
140 Georgia 27534 T 26 25
141 Georgia 27535 C 26 25
142 Georgia 27536 C 26 25
143 Georgia 27537 T 26 25
144 Georgia 27538 C 26 25
145 Georgia 27539 T 26 25
146 Georgia 27540 A 26 25
147 Georgia 27541 G 26 25
148 Georgia 27542 C 26 25
149 Georgia 27543 T 26 25
150 Georgia 27544 G 26 25
151 Georgia 27545 A 26 25
152 Georgia 27546 T 26 25
153 Georgia 27547 A 26 25
154 Georgia 27548 A 26 25
155 Georgia 27549 C 26 25
156 Georgia 27550 A 26 25
157 Georgia 27551 A 26 25
158 Georgia 27552 A 26 25
159 Georgia 27553 T 26 25
160 Georgia 27554 T 26 25
161 Georgia 27555 T 26 25
162 Georgia 27556 G 26 25
163 Georgia 27557 C 26 25
164 Georgia 27558 A 26 25
165 Georgia 27559 C 26 25
166 Georgia 27560 T 26 25
167 Georgia 27561 G 26 25
168 Georgia 27562 A 26 25
169 Georgia 27563 C 26 25
170 Georgia 27564 T 26 25
171 Georgia 27565 T 26 25
172 Georgia 27566 G 26 25
173 Georgia 27567 C 26 25
174 Georgia 27568 T 26 25
175 Georgia 27569 T 26 25
176 Georgia 27570 T 26 25
177 Georgia 27571 A 26 25
178 Georgia 27572 G 26 25
179 Georgia 27573 C 26 25
180 Georgia 27574 A 26 25
181 Georgia 27575 C 26 25
182 Georgia 27576 T 26 25
183 Georgia 27577 C 26 25
184 Georgia 27578 A 26 25
185 Georgia 27579 A 26 25
186 Georgia 27580 T 26 25
187 Georgia 27581 T 26 25
188 Georgia 27582 T 26 25
189 Georgia 27583 G 26 25
190 Georgia 27584 C 26 25
191 Georgia 27585 T 26 25
192 Georgia 27586 T 26 25
193 Georgia 27587 T 26 25
194 Georgia 27588 T 26 25
195 Georgia 27589 G 26 25
196 Georgia 27590 C 26 25
197 Georgia 27591 T 26 25
198 Georgia 27592 T 26 25
199 Georgia 27593 G 26 25
200 Georgia 27594 T 26 25
201 Georgia 27595 C 26 25
202 Georgia 27596 C 26 25
203 Georgia 27597 T 26 25
204 Georgia 27598 G 26 25
205 Georgia 27599 A 26 25
206 Georgia 27600 C 26 25
207 Georgia 27601 G 26 25
208 Georgia 27602 G 26 25
209 Georgia 27603 C 26 25
210 Georgia 27604 G 26 25
211 Georgia 27605 T 26 25
212 Georgia 27606 A 26 25
213 Georgia 27607 A 26 25
214 Georgia 27608 A 26 25
215 Georgia 27609 A 26 25
216 Georgia 27610 C 26 25
217 Georgia 27611 A 26 25
218 Georgia 27612 C 26 25
219 Georgia 27613 G 26 25
220 Georgia 27614 T 26 25
221 Georgia 27615 C 26 25
222 Georgia 27616 T 26 25
223 Georgia 27617 A 26 25
224 Georgia 27618 T 26 25
225 Georgia 27619 C 26 25
226 Georgia 27620 A 26 25
227 Georgia 27621 G 26 25
228 Georgia 27622 T 26 25
229 Georgia 27623 T 26 25
230 Georgia 27624 A 26 25
231 Georgia 27625 C 26 25
232 Georgia 27626 G 26 25
233 Georgia 27627 T 26 25
234 Georgia 27628 G 26 25
235 Georgia 27629 C 26 25
236 Georgia 27630 C 26 25
237 Georgia 27631 A 26 25
238 Georgia 27632 G 26 25
239 Georgia 27633 A 26 25
240 Georgia 27634 T 26 25
241 Georgia 27635 C 26 25
242 Georgia 27636 A 26 25
243 Georgia 27637 G 26 25
244 Georgia 27638 T 26 25
245 Georgia 27639 T 26 25
246 Georgia 27640 T 26 25
247 Georgia 27641 C 26 25
248 Georgia 27642 A 26 25
249 Georgia 27643 C 26 25
250 Georgia 27644 C 26 25
251 Georgia 27645 T 26 25
252 Georgia 27646 A 26 25
253 Georgia 27647 A 26 25
254 Georgia 27648 A 26 25
255 Georgia 27649 C 26 25
256 Georgia 27650 T 26 25
257 Georgia 27651 G 26 25
258 Georgia 27652 T 26 25
259 Georgia 27653 T 26 25
260 Georgia 27654 C 26 25
261 Georgia 27655 A 26 25
262 Georgia 27656 T 26 25
263 Georgia 27657 C 26 25
264 Georgia 27658 A 26 25
265 Georgia 27659 G 26 25
266 Georgia 27660 A 26 25
267 Georgia 27661 C 26 25
268 Georgia 27662 A 26 25
269 Georgia 27663 A 26 25
270 Georgia 27664 G 26 25
271 Georgia 27665 A 26 25
272 Georgia 27666 G 26 25
273 Georgia 27667 G 26 25
274 Georgia 27668 A 26 25
275 Georgia 27669 A 26 25
276 Georgia 27670 G 26 25
277 Georgia 27671 T 26 25
278 Georgia 27672 T 26 25
279 Georgia 27673 C 26 25
280 Georgia 27674 A 26 25
281 Georgia 27675 A 26 25
282 Georgia 27676 G 26 25
283 Georgia 27677 A 26 25
284 Georgia 27678 A 26 25
285 Georgia 27679 C 26 25
286 Georgia 27680 T 26 25
287 Georgia 27681 T 26 25
288 Georgia 27682 T 26 25
289 Georgia 27683 A 26 25
290 Georgia 27684 C 26 25
291 Georgia 27685 T 26 25
292 Georgia 27686 C 26 25
293 Georgia 27687 T 26 25
294 Georgia 27688 C 26 25
295 Georgia 27689 C 26 25
296 Georgia 27690 A 26 25
297 Georgia 27691 A 26 25
298 Georgia 27692 T 26 25
299 Georgia 27693 T 26 25
300 Georgia 27694 T 26 25
301 Georgia 27695 T 26 25
302 Georgia 27696 T 26 25
303 Georgia 27697 C 26 25
304 Georgia 27698 T 26 25
305 Georgia 27699 T 26 25
306 Georgia 27700 A 26 25
307 Georgia 27701 T 26 25
308 Georgia 27702 T 26 25
309 Georgia 27703 G 26 25
310 Georgia 27704 T 26 25
311 Georgia 27705 T 26 25
312 Georgia 27706 G 26 25
313 Georgia 27707 C 26 25
314 Georgia 27708 G 26 25
315 Georgia 27709 G 26 25
316 Georgia 27710 C 26 25
317 Georgia 27711 A 26 25
318 Georgia 27712 A 26 25
319 Georgia 27713 T 26 25
320 Georgia 27714 A 26 25
321 Georgia 27715 G 26 25
322 Georgia 27716 T 26 25
323 Georgia 27717 G 26 25
324 Georgia 27718 T 26 25
325 Georgia 27719 T 26 25
326 Georgia 27720 T 26 25
327 Georgia 27721 A 26 25
328 Georgia 27722 T 26 25
329 Georgia 27723 A 26 25
330 Georgia 27724 A 26 25
331 Georgia 27725 C 26 25
332 Georgia 27726 A 26 25
333 Georgia 27727 C 26 25
334 Georgia 27728 T 26 25
335 Georgia 27729 T 26 25
336 Georgia 27730 T 26 25
337 Georgia 27731 G 26 25
338 Georgia 27732 C 26 25
339 Georgia 27733 T 26 25
340 Georgia 27734 T 26 25
341 Georgia 27735 C 26 25
342 Georgia 27736 A 26 25
343 Georgia 27737 C 26 25
344 Georgia 27738 A 26 25
345 Georgia 27739 C 26 25
346 Georgia 27740 T 26 25
347 Georgia 27741 C 26 25
348 Georgia 27742 A 26 25
349 Georgia 27743 A 26 25
350 Georgia 27744 A 26 25
351 Georgia 27745 A 26 25
352 Georgia 27746 G 26 25
353 Georgia 27747 A 26 25
354 Georgia 27748 A 26 25
355 Georgia 27749 A 26 25
356 Georgia 27750 G 26 25
357 Georgia 27751 A 26 25
358 Georgia 27752 C 26 25
359 Georgia 27753 A 26 25
360 Georgia 27754 G 26 25
361 Georgia 27755 A 26 25
362 Georgia 27756 A 26 25
363 Georgia 27757 T 26 25
364 Georgia 27758 G 26 25
365 Georgia 27759 A 26 25