National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 2                                    
C     18         1                            
D     6     1                                
E 2   24                 1                    
F     30                   1                  
G     12                                      
H     9             1                        
I     25                                      
K     21                           1          
L     45         1               1            
M     6                                      
N     6                                      
P     18                         1     1      
Q 1   15             2                        
R     15           1   1             1        
S     21                                      
T     30               3                 1    
V     24                   1                  
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 France 27394 A 973 973
1 France 27395 T 973 973
2 France 27396 G 973 973
3 France 27397 A 973 973
4 France 27398 A 973 973
5 France 27399 A 973 973
6 France 27400 A 973 973
7 France 27401 T 973 973
8 France 27402 T 973 973
9 France 27403 A 973 973
10 France 27404 T 973 973
11 France 27405 T 973 973
12 France 27406 C 973 973
13 France 27407 T 973 973
14 France 27408 T 973 973
15 France 27409 T 973 973
16 France 27410 T 973 973
17 France 27411 C 973 973
18 France 27412 T 973 973
19 France 27413 T 973 973
20 France 27414 G T 973 972 Leu7Phe
21 France 27415 G 973 973
22 France 27416 C 973 973
23 France 27417 A 973 973
24 France 27418 C 973 973
25 France 27419 T C 973 972 Leu9Pro
26 France 27420 G 973 973
27 France 27421 A 973 973
28 France 27422 T 973 973
29 France 27423 A 973 973
30 France 27424 A 973 973
31 France 27425 C 973 973
32 France 27426 A G 973 972 Thr11Thr
33 France 27427 C 973 973
34 France 27428 T 973 973
35 France 27429 C 973 973
36 France 27430 G 973 973
37 France 27431 C 973 973
38 France 27432 T 973 973
39 France 27433 A 973 973
40 France 27434 C T 973 971 Thr14Ile
41 France 27435 T 973 973
42 France 27436 T 973 973
43 France 27437 G 973 973
44 France 27438 T 973 973
45 France 27439 G 973 973
46 France 27440 A 973 973
47 France 27441 G 973 973
48 France 27442 C 973 973
49 France 27443 T 973 973
50 France 27444 T 973 973
51 France 27445 T 973 973
52 France 27446 A 973 973
53 France 27447 T 973 973
54 France 27448 C 973 973
55 France 27449 A 973 973
56 France 27450 C 973 973
57 France 27451 T 973 973
58 France 27452 A 973 973
59 France 27453 C 973 973
60 France 27454 C 973 973
61 France 27455 A 973 973
62 France 27456 A 973 973
63 France 27457 G 973 973
64 France 27458 A 973 973
65 France 27459 G 973 973
66 France 27460 T 973 973
67 France 27461 G 973 973
68 France 27462 T 973 973
69 France 27463 G C 973 968 Val24Leu
70 France 27464 T 973 973
71 France 27465 T 973 973
72 France 27466 A 973 973
73 France 27467 G 973 973
74 France 27468 A 973 973
75 France 27469 G 973 973
76 France 27470 G 973 973
77 France 27471 T 973 973
78 France 27472 A 973 973
79 France 27473 C 973 973
80 France 27474 A 973 973
81 France 27475 A 973 973
82 France 27476 C T 973 971 Thr28Ile
83 France 27477 A 973 973
84 France 27478 G 973 973
85 France 27479 T 973 973
86 France 27480 A 973 973
87 France 27481 C 973 973
88 France 27482 T 973 973
89 France 27483 T 973 973
90 France 27484 T 973 973
91 France 27485 T 973 972
92 France 27486 A 973 972
93 France 27487 A 973 972
94 France 27488 A 973 972
95 France 27489 A 973 972
96 France 27490 G T 973 971 Glu33*
97 France 27491 A 973 972
98 France 27492 A 973 972
99 France 27493 C T 973 971 Pro34Ser
100 France 27494 C 973 972
101 France 27495 T G 973 971 Pro34Pro
102 France 27496 T 973 972
103 France 27497 G 973 972
104 France 27498 C 973 972
105 France 27499 T 973 972
106 France 27500 C 973 972
107 France 27501 T 973 972
108 France 27502 T 973 972
109 France 27503 C 973 972
110 France 27504 T 973 972
111 France 27505 G 973 973
112 France 27506 G 973 973
113 France 27507 A 973 973
114 France 27508 A 973 973
115 France 27509 C 973 973
116 France 27510 A 973 973
117 France 27511 T 973 973
118 France 27512 A 972 972
119 France 27513 C T 972 970 Tyr40Tyr
120 France 27514 G T 972 971 Glu41*
121 France 27515 A 972 972
122 France 27516 G 972 972
123 France 27517 G 972 972
124 France 27518 G 972 972
125 France 27519 C 972 972
126 France 27520 A 972 972
127 France 27521 A 972 972
128 France 27522 T 972 972
129 France 27523 T 972 972
130 France 27524 C 971 971
131 France 27525 A 971 971
132 France 27526 C 971 971
133 France 27527 C 971 971
134 France 27528 A 971 971
135 France 27529 T 971 971
136 France 27530 T 971 971
137 France 27531 T 971 971
138 France 27532 C 971 971
139 France 27533 A 971 971
140 France 27534 T 971 971
141 France 27535 C 971 971
142 France 27536 C 971 971
143 France 27537 T 971 971
144 France 27538 C 971 971
145 France 27539 T 971 971
146 France 27540 A 971 971
147 France 27541 G 971 971
148 France 27542 C 971 971
149 France 27543 T 971 971
150 France 27544 G 971 971
151 France 27545 A 971 971
152 France 27546 T 971 971
153 France 27547 A 971 971
154 France 27548 A 971 970
155 France 27549 C 971 970
156 France 27550 A 971 970
157 France 27551 A 971 970
158 France 27552 A 971 970
159 France 27553 T 971 970
160 France 27554 T 971 970
161 France 27555 T 971 971
162 France 27556 G 971 971
163 France 27557 C 971 971
164 France 27558 A 971 971
165 France 27559 C 971 971
166 France 27560 T 971 971
167 France 27561 G 971 971
168 France 27562 A 971 971
169 France 27563 C 971 971
170 France 27564 T 971 971
171 France 27565 T 971 971
172 France 27566 G 971 971
173 France 27567 C 971 971
174 France 27568 T 971 971
175 France 27569 T 971 971
176 France 27570 T 971 971
177 France 27571 A 971 971
178 France 27572 G 971 971
179 France 27573 C 970 970
180 France 27574 A 970 970
181 France 27575 C 970 970
182 France 27576 T 970 970
183 France 27577 C 970 970
184 France 27578 A 970 970
185 France 27579 A 970 970
186 France 27580 T 970 970
187 France 27581 T 970 970
188 France 27582 T 970 970
189 France 27583 G 970 970
190 France 27584 C 970 970
191 France 27585 T 970 970
192 France 27586 T 970 970
193 France 27587 T 970 970
194 France 27588 T A 970 969 Phe65Leu
195 France 27589 G 970 970
196 France 27590 C 970 970
197 France 27591 T 970 970
198 France 27592 T 970 970
199 France 27593 G T 970 969 Cys67Phe
200 France 27594 T 970 970
201 France 27595 C 970 970
202 France 27596 C 970 970
203 France 27597 T 970 970
204 France 27598 G 970 970
205 France 27599 A 970 970
206 France 27600 C T 970 968 Asp69Asp
207 France 27601 G 970 970
208 France 27602 G 970 970
209 France 27603 C 970 970
210 France 27604 G 970 970
211 France 27605 T 970 970
212 France 27606 A 970 970
213 France 27607 A 970 970
214 France 27608 A 970 970
215 France 27609 A 970 970
216 France 27610 C 970 970
217 France 27611 A 970 970
218 France 27612 C T 970 967 His73His
219 France 27613 G 970 970
220 France 27614 T 970 970
221 France 27615 C 970 970
222 France 27616 T 970 970
223 France 27617 A 970 970
224 France 27618 T 970 970
225 France 27619 C 970 970
226 France 27620 A 970 970
227 France 27621 G T 970 969 Gln76His
228 France 27622 T 970 970
229 France 27623 T 970 970
230 France 27624 A 970 970
231 France 27625 C 970 970
232 France 27626 G 970 970
233 France 27627 T 970 970
234 France 27628 G 970 970
235 France 27629 C 970 970
236 France 27630 C T 970 969 Ala79Ala
237 France 27631 A 970 970
238 France 27632 G T 970 937 Arg80Ile
239 France 27633 A 970 970
240 France 27634 T 970 970
241 France 27635 C 970 970
242 France 27636 A 970 970
243 France 27637 G 970 970
244 France 27638 T 970 970
245 France 27639 T 970 970
246 France 27640 T 970 970
247 France 27641 C 970 970
248 France 27642 A 970 970
249 France 27643 C 970 970
250 France 27644 C 970 970
251 France 27645 T 970 970
252 France 27646 A 970 970
253 France 27647 A 970 970
254 France 27648 A 970 970
255 France 27649 C 970 970
256 France 27650 T 970 969
257 France 27651 G 970 969
258 France 27652 T 970 969
259 France 27653 T 970 969
260 France 27654 C 970 969
261 France 27655 A 970 969
262 France 27656 T 970 969
263 France 27657 C 970 969
264 France 27658 A G 970 968 Arg89Gly
265 France 27659 G 970 969
266 France 27660 A G 970 967 Arg89Arg
267 France 27661 C T 970 968 Gln90*
268 France 27662 A 970 969
269 France 27663 A T 970 967 Gln90His
270 France 27664 G 970 968
271 France 27665 A 970 968
272 France 27666 G 970 968
273 France 27667 G A 970 967 Glu92Lys
274 France 27668 A 970 969
275 France 27669 A 970 969
276 France 27670 G 970 969
277 France 27671 T 970 969
278 France 27672 T 970 969
279 France 27673 C 970 969
280 France 27674 A 970 968
281 France 27675 A 970 968
282 France 27676 G 970 969
283 France 27677 A 970 969
284 France 27678 A 970 970
285 France 27679 C 970 970
286 France 27680 T 970 970
287 France 27681 T 970 970
288 France 27682 T 970 970
289 France 27683 A 970 970
290 France 27684 C 970 970
291 France 27685 T 970 969
292 France 27686 C 970 969
293 France 27687 T 970 969
294 France 27688 C 970 969
295 France 27689 C 970 969
296 France 27690 A 970 969
297 France 27691 A 970 969
298 France 27692 T 970 969
299 France 27693 T 970 969
300 France 27694 T 970 969
301 France 27695 T 970 969
302 France 27696 T 970 969
303 France 27697 C 970 969
304 France 27698 T 970 969
305 France 27699 T 970 969
306 France 27700 A 970 969
307 France 27701 T 970 969
308 France 27702 T 970 969
309 France 27703 G 970 969
310 France 27704 T 970 969
311 France 27705 T 970 969
312 France 27706 G 970 969
313 France 27707 C 970 970
314 France 27708 G 970 970
315 France 27709 G 970 970
316 France 27710 C 970 970
317 France 27711 A T 970 966 Ala106Ala
318 France 27712 A 970 970
319 France 27713 T 970 970
320 France 27714 A 970 970
321 France 27715 G 970 970
322 France 27716 T 970 970
323 France 27717 G 970 970
324 France 27718 T 969 969
325 France 27719 T 969 969
326 France 27720 T 969 969
327 France 27721 A 969 969
328 France 27722 T 969 969
329 France 27723 A 969 969
330 France 27724 A 969 969
331 France 27725 C 969 969
332 France 27726 A 969 969
333 France 27727 C 969 969
334 France 27728 T 969 969
335 France 27729 T 969 969
336 France 27730 T 969 969
337 France 27731 G 969 969
338 France 27732 C 969 969
339 France 27733 T 969 969
340 France 27734 T 969 969
341 France 27735 C 969 969
342 France 27736 A 969 969
343 France 27737 C 969 969
344 France 27738 A 969 969
345 France 27739 C 969 969
346 France 27740 T 969 969
347 France 27741 C 969 969
348 France 27742 A 969 969
349 France 27743 A 969 969
350 France 27744 A 969 969
351 France 27745 A 969 969
352 France 27746 G 969 969
353 France 27747 A 969 969
354 France 27748 A C 969 968 Lys119Gln
355 France 27749 A 969 969
356 France 27750 G 969 969
357 France 27751 A 969 969
358 France 27752 C T 969 968 Thr120Ile
359 France 27753 A 969 969
360 France 27754 G 969 969
361 France 27755 A 969 969
362 France 27756 A 969 969
363 France 27757 T 969 969
364 France 27758 G 969 969
365 France 27759 A 969 969