National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 1                                    
C     18         1                            
D     6                                      
E     24           1                          
F     30                                      
G     12     1                             1  
H     9                                     1
I     25                     1                
K     21                                      
L     45         2   1     1                  
M     6                                      
N     6                                      
P     18                   1           1      
Q 1   15                             1        
R     15                                      
S     21                                      
T     30               1                      
V     24                   1                  
Y     15                                     2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Finland 27394 A 992 992
1 Finland 27395 T 992 992
2 Finland 27396 G 992 992
3 Finland 27397 A 992 992
4 Finland 27398 A 992 992
5 Finland 27399 A 992 992
6 Finland 27400 A 992 992
7 Finland 27401 T 992 992
8 Finland 27402 T 992 992
9 Finland 27403 A 992 992
10 Finland 27404 T 992 992
11 Finland 27405 T 992 992
12 Finland 27406 C T 992 991 Leu5Phe
13 Finland 27407 T 992 992
14 Finland 27408 T 992 992
15 Finland 27409 T 992 992
16 Finland 27410 T 992 992
17 Finland 27411 C 992 992
18 Finland 27412 T 992 992
19 Finland 27413 T 992 992
20 Finland 27414 G 992 992
21 Finland 27415 G 992 992
22 Finland 27416 C 992 992
23 Finland 27417 A 992 992
24 Finland 27418 C 992 992
25 Finland 27419 T 992 992
26 Finland 27420 G 992 992
27 Finland 27421 A 992 992
28 Finland 27422 T 992 992
29 Finland 27423 A 992 992
30 Finland 27424 A 992 992
31 Finland 27425 C 992 992
32 Finland 27426 A 992 992
33 Finland 27427 C T 992 989 Leu12Phe
34 Finland 27428 T 992 992
35 Finland 27429 C 992 992
36 Finland 27430 G 992 992
37 Finland 27431 C 992 992
38 Finland 27432 T 992 992
39 Finland 27433 A 992 992
40 Finland 27434 C T 992 991 Thr14Ile
41 Finland 27435 T 992 992
42 Finland 27436 T 992 992
43 Finland 27437 G 992 992
44 Finland 27438 T 992 992
45 Finland 27439 G 992 992
46 Finland 27440 A 992 992
47 Finland 27441 G 993 993
48 Finland 27442 C 993 993
49 Finland 27443 T 993 993
50 Finland 27444 T 993 993
51 Finland 27445 T 993 993
52 Finland 27446 A 993 993
53 Finland 27447 T 993 993
54 Finland 27448 C 993 993
55 Finland 27449 A 993 993
56 Finland 27450 C 993 993
57 Finland 27451 T 993 993
58 Finland 27452 A 993 993
59 Finland 27453 C 993 993
60 Finland 27454 C 993 993
61 Finland 27455 A 993 993
62 Finland 27456 A 993 993
63 Finland 27457 G 993 993
64 Finland 27458 A 993 993
65 Finland 27459 G 993 993
66 Finland 27460 T 993 993
67 Finland 27461 G 993 993
68 Finland 27462 T 993 993
69 Finland 27463 G 993 993
70 Finland 27464 T 993 993
71 Finland 27465 T 993 993
72 Finland 27466 A 993 993
73 Finland 27467 G 993 993
74 Finland 27468 A 993 993
75 Finland 27469 G 993 993
76 Finland 27470 G 993 993
77 Finland 27471 T 993 993
78 Finland 27472 A 993 993
79 Finland 27473 C 993 993
80 Finland 27474 A 993 993
81 Finland 27475 A 993 993
82 Finland 27476 C 993 993
83 Finland 27477 A 993 993
84 Finland 27478 G T 993 992 Val29Leu
85 Finland 27479 T 993 993
86 Finland 27480 A 993 993
87 Finland 27481 C 993 993
88 Finland 27482 T 993 993
89 Finland 27483 T 993 993
90 Finland 27484 T 993 993
91 Finland 27485 T 993 993
92 Finland 27486 A 993 993
93 Finland 27487 A 993 993
94 Finland 27488 A 993 993
95 Finland 27489 A 993 993
96 Finland 27490 G 993 993
97 Finland 27491 A 993 993
98 Finland 27492 A 993 993
99 Finland 27493 C 993 993
100 Finland 27494 C 993 993
101 Finland 27495 T 993 993
102 Finland 27496 T 993 993
103 Finland 27497 G 993 993
104 Finland 27498 C 993 993
105 Finland 27499 T 993 993
106 Finland 27500 C 993 993
107 Finland 27501 T 993 993
108 Finland 27502 T 993 993
109 Finland 27503 C 993 993
110 Finland 27504 T 993 993
111 Finland 27505 G 993 993
112 Finland 27506 G T 993 992 Gly38Val
113 Finland 27507 A 993 993
114 Finland 27508 A 993 993
115 Finland 27509 C 993 993
116 Finland 27510 A 993 993
117 Finland 27511 T 993 993
118 Finland 27512 A 993 993
119 Finland 27513 C T 993 992 Tyr40Tyr
120 Finland 27514 G 993 993
121 Finland 27515 A 993 993
122 Finland 27516 G 993 993
123 Finland 27517 G 993 993
124 Finland 27518 G 993 993
125 Finland 27519 C 993 993
126 Finland 27520 A 993 993
127 Finland 27521 A 993 993
128 Finland 27522 T 993 993
129 Finland 27523 T 993 993
130 Finland 27524 C 993 993
131 Finland 27525 A 993 993
132 Finland 27526 C 993 993
133 Finland 27527 C 993 993
134 Finland 27528 A 993 993
135 Finland 27529 T 993 993
136 Finland 27530 T 993 993
137 Finland 27531 T 993 993
138 Finland 27532 C T 993 984 His47Tyr
139 Finland 27533 A 993 993
140 Finland 27534 T 993 993
141 Finland 27535 C 993 993
142 Finland 27536 C 993 993
143 Finland 27537 T 993 993
144 Finland 27538 C 993 993
145 Finland 27539 T 993 993
146 Finland 27540 A 993 993
147 Finland 27541 G 993 993
148 Finland 27542 C 993 993
149 Finland 27543 T 993 993
150 Finland 27544 G 993 993
151 Finland 27545 A 993 993
152 Finland 27546 T 993 993
153 Finland 27547 A 993 993
154 Finland 27548 A 993 993
155 Finland 27549 C 993 993
156 Finland 27550 A 993 993
157 Finland 27551 A 993 993
158 Finland 27552 A 993 993
159 Finland 27553 T 993 993
160 Finland 27554 T 993 993
161 Finland 27555 T 993 993
162 Finland 27556 G 993 993
163 Finland 27557 C 993 993
164 Finland 27558 A 993 993
165 Finland 27559 C 993 993
166 Finland 27560 T 993 993
167 Finland 27561 G 993 993
168 Finland 27562 A 993 993
169 Finland 27563 C 993 993
170 Finland 27564 T 993 993
171 Finland 27565 T 993 993
172 Finland 27566 G 993 993
173 Finland 27567 C 993 993
174 Finland 27568 T 993 993
175 Finland 27569 T 993 993
176 Finland 27570 T 993 993
177 Finland 27571 A 993 993
178 Finland 27572 G 993 993
179 Finland 27573 C 993 993
180 Finland 27574 A 993 993
181 Finland 27575 C 993 993
182 Finland 27576 T 993 993
183 Finland 27577 C 993 993
184 Finland 27578 A G 993 992 Gln62Arg
185 Finland 27579 A 993 992
186 Finland 27580 T 993 992
187 Finland 27581 T 993 992
188 Finland 27582 T 993 992
189 Finland 27583 G 993 992
190 Finland 27584 C 993 992
191 Finland 27585 T 993 992
192 Finland 27586 T 993 992
193 Finland 27587 T 993 992
194 Finland 27588 T 993 992
195 Finland 27589 G 993 992
196 Finland 27590 C 993 992
197 Finland 27591 T 993 992
198 Finland 27592 T 993 993
199 Finland 27593 G 993 993
200 Finland 27594 T 993 993
201 Finland 27595 C 993 993
202 Finland 27596 C 993 993
203 Finland 27597 T 993 993
204 Finland 27598 G 993 993
205 Finland 27599 A 993 992
206 Finland 27600 C 993 992
207 Finland 27601 G 993 992
208 Finland 27602 G A 993 991 Gly70Asp
209 Finland 27603 C 993 992
210 Finland 27604 G 994 994
211 Finland 27605 T 994 994
212 Finland 27606 A 994 994
213 Finland 27607 A 994 994
214 Finland 27608 A 994 994
215 Finland 27609 A 994 994
216 Finland 27610 C 994 994
217 Finland 27611 A 994 994
218 Finland 27612 C 994 994
219 Finland 27613 G 994 994
220 Finland 27614 T 994 994
221 Finland 27615 C 994 994
222 Finland 27616 T 994 994
223 Finland 27617 A 994 994
224 Finland 27618 T 994 994
225 Finland 27619 C T 994 993 Gln76*
226 Finland 27620 A 994 994
227 Finland 27621 G 994 994
228 Finland 27622 T 994 994
229 Finland 27623 T 994 994
230 Finland 27624 A 994 994
231 Finland 27625 C 994 994
232 Finland 27626 G 994 994
233 Finland 27627 T 994 994
234 Finland 27628 G 994 994
235 Finland 27629 C 994 994
236 Finland 27630 C 994 994
237 Finland 27631 A 994 994
238 Finland 27632 G 994 994
239 Finland 27633 A 994 994
240 Finland 27634 T 994 994
241 Finland 27635 C 994 994
242 Finland 27636 A 994 994
243 Finland 27637 G 994 994
244 Finland 27638 T 994 994
245 Finland 27639 T 994 994
246 Finland 27640 T 994 994
247 Finland 27641 C 994 994
248 Finland 27642 A 994 994
249 Finland 27643 C 994 994
250 Finland 27644 C 994 994
251 Finland 27645 T 994 994
252 Finland 27646 A 994 994
253 Finland 27647 A 994 994
254 Finland 27648 A 994 994
255 Finland 27649 C 994 994
256 Finland 27650 T 994 994
257 Finland 27651 G 994 994
258 Finland 27652 T 994 994
259 Finland 27653 T 994 994
260 Finland 27654 C 994 994
261 Finland 27655 A 994 994
262 Finland 27656 T 994 994
263 Finland 27657 C 994 994
264 Finland 27658 A 994 994
265 Finland 27659 G 994 994
266 Finland 27660 A 994 994
267 Finland 27661 C 994 994
268 Finland 27662 A 994 994
269 Finland 27663 A 994 994
270 Finland 27664 G 994 994
271 Finland 27665 A 994 994
272 Finland 27666 G 994 994
273 Finland 27667 G 994 994
274 Finland 27668 A 994 994
275 Finland 27669 A 994 994
276 Finland 27670 G 994 994
277 Finland 27671 T 994 994
278 Finland 27672 T 994 994
279 Finland 27673 C 994 994
280 Finland 27674 A 994 994
281 Finland 27675 A 994 994
282 Finland 27676 G 994 994
283 Finland 27677 A G 994 993 Glu95Gly
284 Finland 27678 A 994 994
285 Finland 27679 C 994 994
286 Finland 27680 T 994 994
287 Finland 27681 T 994 994
288 Finland 27682 T 994 994
289 Finland 27683 A 994 994
290 Finland 27684 C T 994 992 Tyr97Tyr
291 Finland 27685 T 994 994
292 Finland 27686 C 994 994
293 Finland 27687 T 994 994
294 Finland 27688 C T 994 993 Pro99Ser
295 Finland 27689 C T 994 993 Pro99Leu
296 Finland 27690 A 994 994
297 Finland 27691 A 994 994
298 Finland 27692 T 994 994
299 Finland 27693 T 994 994
300 Finland 27694 T 994 994
301 Finland 27695 T 994 994
302 Finland 27696 T 994 994
303 Finland 27697 C 994 994
304 Finland 27698 T A 994 993 Leu102His
305 Finland 27699 T 994 994
306 Finland 27700 A 994 994
307 Finland 27701 T 994 994
308 Finland 27702 T G 994 993 Ile103Met
309 Finland 27703 G 994 994
310 Finland 27704 T 994 994
311 Finland 27705 T 994 994
312 Finland 27706 G 994 994
313 Finland 27707 C 994 994
314 Finland 27708 G 994 994
315 Finland 27709 G 994 994
316 Finland 27710 C 994 994
317 Finland 27711 A T 994 993 Ala106Ala
318 Finland 27712 A 994 994
319 Finland 27713 T 994 994
320 Finland 27714 A 994 994
321 Finland 27715 G 994 994
322 Finland 27716 T 994 994
323 Finland 27717 G 995 995
324 Finland 27718 T 995 995
325 Finland 27719 T 995 995
326 Finland 27720 T 995 995
327 Finland 27721 A 995 995
328 Finland 27722 T 995 995
329 Finland 27723 A 995 995
330 Finland 27724 A 995 995
331 Finland 27725 C 995 995
332 Finland 27726 A 995 995
333 Finland 27727 C 995 995
334 Finland 27728 T 995 995
335 Finland 27729 T 995 995
336 Finland 27730 T 995 995
337 Finland 27731 G T 995 993 Cys113Phe
338 Finland 27732 C 995 995
339 Finland 27733 T 995 995
340 Finland 27734 T 995 995
341 Finland 27735 C 995 995
342 Finland 27736 A 995 995
343 Finland 27737 C 995 995
344 Finland 27738 A 995 995
345 Finland 27739 C 995 995
346 Finland 27740 T 995 995
347 Finland 27741 C T 995 994 Leu116Leu
348 Finland 27742 A 995 995
349 Finland 27743 A 995 995
350 Finland 27744 A 995 995
351 Finland 27745 A 995 995
352 Finland 27746 G 995 995
353 Finland 27747 A 995 995
354 Finland 27748 A 995 995
355 Finland 27749 A 995 995
356 Finland 27750 G 995 995
357 Finland 27751 A 995 995
358 Finland 27752 C 995 995
359 Finland 27753 A 995 995
360 Finland 27754 G 995 995
361 Finland 27755 A 995 995
362 Finland 27756 A 995 995
363 Finland 27757 T 995 995
364 Finland 27758 G 989 989
365 Finland 27759 A 989 989