National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30               1                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 El_Salvador 27394 A 6 6
1 El_Salvador 27395 T 6 6
2 El_Salvador 27396 G 6 6
3 El_Salvador 27397 A 6 6
4 El_Salvador 27398 A 6 6
5 El_Salvador 27399 A 6 6
6 El_Salvador 27400 A 6 6
7 El_Salvador 27401 T 6 6
8 El_Salvador 27402 T 6 6
9 El_Salvador 27403 A 6 6
10 El_Salvador 27404 T 6 6
11 El_Salvador 27405 T 6 6
12 El_Salvador 27406 C 6 6
13 El_Salvador 27407 T 6 6
14 El_Salvador 27408 T 6 6
15 El_Salvador 27409 T 6 6
16 El_Salvador 27410 T 6 6
17 El_Salvador 27411 C 6 6
18 El_Salvador 27412 T 6 6
19 El_Salvador 27413 T 6 6
20 El_Salvador 27414 G 6 6
21 El_Salvador 27415 G 6 6
22 El_Salvador 27416 C 6 6
23 El_Salvador 27417 A 6 6
24 El_Salvador 27418 C 6 6
25 El_Salvador 27419 T 6 6
26 El_Salvador 27420 G 6 6
27 El_Salvador 27421 A 6 6
28 El_Salvador 27422 T 6 6
29 El_Salvador 27423 A 6 6
30 El_Salvador 27424 A 6 6
31 El_Salvador 27425 C 6 6
32 El_Salvador 27426 A 6 6
33 El_Salvador 27427 C 6 6
34 El_Salvador 27428 T 6 6
35 El_Salvador 27429 C 6 6
36 El_Salvador 27430 G 6 6
37 El_Salvador 27431 C 6 6
38 El_Salvador 27432 T 6 6
39 El_Salvador 27433 A 6 6
40 El_Salvador 27434 C 6 6
41 El_Salvador 27435 T 6 6
42 El_Salvador 27436 T 6 6
43 El_Salvador 27437 G 6 6
44 El_Salvador 27438 T 6 6
45 El_Salvador 27439 G 6 6
46 El_Salvador 27440 A 6 6
47 El_Salvador 27441 G 6 6
48 El_Salvador 27442 C 6 6
49 El_Salvador 27443 T 6 6
50 El_Salvador 27444 T 6 6
51 El_Salvador 27445 T 6 6
52 El_Salvador 27446 A 6 6
53 El_Salvador 27447 T 6 6
54 El_Salvador 27448 C 6 6
55 El_Salvador 27449 A 6 6
56 El_Salvador 27450 C 6 6
57 El_Salvador 27451 T 6 6
58 El_Salvador 27452 A 6 6
59 El_Salvador 27453 C 6 6
60 El_Salvador 27454 C 6 6
61 El_Salvador 27455 A 6 6
62 El_Salvador 27456 A 6 6
63 El_Salvador 27457 G 6 6
64 El_Salvador 27458 A 6 6
65 El_Salvador 27459 G 6 6
66 El_Salvador 27460 T 6 6
67 El_Salvador 27461 G 6 6
68 El_Salvador 27462 T 6 6
69 El_Salvador 27463 G 6 6
70 El_Salvador 27464 T 6 6
71 El_Salvador 27465 T 6 6
72 El_Salvador 27466 A 6 6
73 El_Salvador 27467 G 6 6
74 El_Salvador 27468 A 6 6
75 El_Salvador 27469 G 6 6
76 El_Salvador 27470 G 6 6
77 El_Salvador 27471 T 6 6
78 El_Salvador 27472 A 6 6
79 El_Salvador 27473 C 6 6
80 El_Salvador 27474 A 6 6
81 El_Salvador 27475 A 6 6
82 El_Salvador 27476 C 6 6
83 El_Salvador 27477 A 6 6
84 El_Salvador 27478 G 6 6
85 El_Salvador 27479 T 6 6
86 El_Salvador 27480 A 6 6
87 El_Salvador 27481 C 6 6
88 El_Salvador 27482 T 6 6
89 El_Salvador 27483 T 6 6
90 El_Salvador 27484 T 6 6
91 El_Salvador 27485 T 6 6
92 El_Salvador 27486 A 6 6
93 El_Salvador 27487 A 6 6
94 El_Salvador 27488 A 6 6
95 El_Salvador 27489 A 6 6
96 El_Salvador 27490 G 6 6
97 El_Salvador 27491 A 6 6
98 El_Salvador 27492 A 6 6
99 El_Salvador 27493 C 6 6
100 El_Salvador 27494 C 6 6
101 El_Salvador 27495 T 6 6
102 El_Salvador 27496 T 6 6
103 El_Salvador 27497 G 6 6
104 El_Salvador 27498 C 6 6
105 El_Salvador 27499 T 6 6
106 El_Salvador 27500 C 6 6
107 El_Salvador 27501 T 6 6
108 El_Salvador 27502 T 6 6
109 El_Salvador 27503 C 6 6
110 El_Salvador 27504 T 6 6
111 El_Salvador 27505 G 6 6
112 El_Salvador 27506 G 6 6
113 El_Salvador 27507 A 6 6
114 El_Salvador 27508 A 6 6
115 El_Salvador 27509 C T 6 1 Thr39Ile
116 El_Salvador 27510 A 6 6
117 El_Salvador 27511 T 6 6
118 El_Salvador 27512 A 6 6
119 El_Salvador 27513 C 6 6
120 El_Salvador 27514 G 6 6
121 El_Salvador 27515 A 6 6
122 El_Salvador 27516 G 6 6
123 El_Salvador 27517 G 6 6
124 El_Salvador 27518 G 6 6
125 El_Salvador 27519 C 6 6
126 El_Salvador 27520 A 6 6
127 El_Salvador 27521 A 6 6
128 El_Salvador 27522 T 6 6
129 El_Salvador 27523 T 6 6
130 El_Salvador 27524 C 6 6
131 El_Salvador 27525 A 6 6
132 El_Salvador 27526 C 6 6
133 El_Salvador 27527 C 6 6
134 El_Salvador 27528 A 6 6
135 El_Salvador 27529 T 6 6
136 El_Salvador 27530 T 6 6
137 El_Salvador 27531 T 6 6
138 El_Salvador 27532 C 6 6
139 El_Salvador 27533 A 6 6
140 El_Salvador 27534 T 6 6
141 El_Salvador 27535 C 6 6
142 El_Salvador 27536 C 6 6
143 El_Salvador 27537 T 6 6
144 El_Salvador 27538 C 6 6
145 El_Salvador 27539 T 6 6
146 El_Salvador 27540 A 6 6
147 El_Salvador 27541 G 6 6
148 El_Salvador 27542 C 6 6
149 El_Salvador 27543 T 6 6
150 El_Salvador 27544 G 6 6
151 El_Salvador 27545 A 6 6
152 El_Salvador 27546 T 6 6
153 El_Salvador 27547 A 6 6
154 El_Salvador 27548 A 6 6
155 El_Salvador 27549 C 6 6
156 El_Salvador 27550 A 6 6
157 El_Salvador 27551 A 6 6
158 El_Salvador 27552 A 6 6
159 El_Salvador 27553 T 6 6
160 El_Salvador 27554 T 6 6
161 El_Salvador 27555 T 6 6
162 El_Salvador 27556 G 6 6
163 El_Salvador 27557 C 6 6
164 El_Salvador 27558 A 6 6
165 El_Salvador 27559 C 6 6
166 El_Salvador 27560 T 6 6
167 El_Salvador 27561 G 6 6
168 El_Salvador 27562 A 6 6
169 El_Salvador 27563 C 6 6
170 El_Salvador 27564 T 6 6
171 El_Salvador 27565 T 6 6
172 El_Salvador 27566 G 6 6
173 El_Salvador 27567 C 6 6
174 El_Salvador 27568 T 6 6
175 El_Salvador 27569 T 6 6
176 El_Salvador 27570 T 6 6
177 El_Salvador 27571 A 6 6
178 El_Salvador 27572 G 6 6
179 El_Salvador 27573 C 6 6
180 El_Salvador 27574 A 6 6
181 El_Salvador 27575 C 6 6
182 El_Salvador 27576 T 6 6
183 El_Salvador 27577 C 6 6
184 El_Salvador 27578 A 6 6
185 El_Salvador 27579 A 6 6
186 El_Salvador 27580 T 6 6
187 El_Salvador 27581 T 6 6
188 El_Salvador 27582 T 6 6
189 El_Salvador 27583 G 6 6
190 El_Salvador 27584 C 6 6
191 El_Salvador 27585 T 6 6
192 El_Salvador 27586 T 6 6
193 El_Salvador 27587 T 6 6
194 El_Salvador 27588 T 6 6
195 El_Salvador 27589 G 6 6
196 El_Salvador 27590 C 6 6
197 El_Salvador 27591 T 6 6
198 El_Salvador 27592 T 6 6
199 El_Salvador 27593 G 6 6
200 El_Salvador 27594 T 6 6
201 El_Salvador 27595 C 6 6
202 El_Salvador 27596 C 6 6
203 El_Salvador 27597 T 6 6
204 El_Salvador 27598 G 6 6
205 El_Salvador 27599 A 6 6
206 El_Salvador 27600 C 6 6
207 El_Salvador 27601 G 6 6
208 El_Salvador 27602 G 6 6
209 El_Salvador 27603 C 6 6
210 El_Salvador 27604 G 6 6
211 El_Salvador 27605 T 6 6
212 El_Salvador 27606 A 6 6
213 El_Salvador 27607 A 6 6
214 El_Salvador 27608 A 6 6
215 El_Salvador 27609 A 6 6
216 El_Salvador 27610 C 6 6
217 El_Salvador 27611 A 6 6
218 El_Salvador 27612 C 6 6
219 El_Salvador 27613 G 6 6
220 El_Salvador 27614 T 6 6
221 El_Salvador 27615 C 6 6
222 El_Salvador 27616 T 6 6
223 El_Salvador 27617 A 6 6
224 El_Salvador 27618 T 6 6
225 El_Salvador 27619 C 6 6
226 El_Salvador 27620 A 6 6
227 El_Salvador 27621 G 6 6
228 El_Salvador 27622 T 6 6
229 El_Salvador 27623 T 6 6
230 El_Salvador 27624 A 6 6
231 El_Salvador 27625 C 6 6
232 El_Salvador 27626 G 6 6
233 El_Salvador 27627 T 6 6
234 El_Salvador 27628 G 6 6
235 El_Salvador 27629 C 6 6
236 El_Salvador 27630 C 6 6
237 El_Salvador 27631 A 6 6
238 El_Salvador 27632 G 6 6
239 El_Salvador 27633 A 6 6
240 El_Salvador 27634 T 6 6
241 El_Salvador 27635 C 6 6
242 El_Salvador 27636 A 6 6
243 El_Salvador 27637 G 6 6
244 El_Salvador 27638 T 6 6
245 El_Salvador 27639 T 6 6
246 El_Salvador 27640 T 6 6
247 El_Salvador 27641 C 6 6
248 El_Salvador 27642 A 6 6
249 El_Salvador 27643 C 6 6
250 El_Salvador 27644 C 6 6
251 El_Salvador 27645 T 6 6
252 El_Salvador 27646 A 6 6
253 El_Salvador 27647 A 6 6
254 El_Salvador 27648 A 6 6
255 El_Salvador 27649 C 6 6
256 El_Salvador 27650 T 6 6
257 El_Salvador 27651 G 6 6
258 El_Salvador 27652 T 6 6
259 El_Salvador 27653 T 6 6
260 El_Salvador 27654 C 6 6
261 El_Salvador 27655 A 6 6
262 El_Salvador 27656 T 6 6
263 El_Salvador 27657 C 6 6
264 El_Salvador 27658 A 6 6
265 El_Salvador 27659 G 6 6
266 El_Salvador 27660 A 6 6
267 El_Salvador 27661 C 6 6
268 El_Salvador 27662 A 6 6
269 El_Salvador 27663 A 6 6
270 El_Salvador 27664 G 6 6
271 El_Salvador 27665 A 6 6
272 El_Salvador 27666 G 6 6
273 El_Salvador 27667 G 6 6
274 El_Salvador 27668 A 6 6
275 El_Salvador 27669 A 6 6
276 El_Salvador 27670 G 6 6
277 El_Salvador 27671 T 6 6
278 El_Salvador 27672 T 6 6
279 El_Salvador 27673 C 6 6
280 El_Salvador 27674 A 6 6
281 El_Salvador 27675 A 6 6
282 El_Salvador 27676 G 6 6
283 El_Salvador 27677 A 6 6
284 El_Salvador 27678 A 6 6
285 El_Salvador 27679 C 6 6
286 El_Salvador 27680 T 6 6
287 El_Salvador 27681 T 6 6
288 El_Salvador 27682 T 6 6
289 El_Salvador 27683 A 6 6
290 El_Salvador 27684 C 6 6
291 El_Salvador 27685 T 6 6
292 El_Salvador 27686 C 6 6
293 El_Salvador 27687 T 6 6
294 El_Salvador 27688 C 6 6
295 El_Salvador 27689 C 6 6
296 El_Salvador 27690 A 6 6
297 El_Salvador 27691 A 6 6
298 El_Salvador 27692 T 6 6
299 El_Salvador 27693 T 6 6
300 El_Salvador 27694 T 6 6
301 El_Salvador 27695 T 6 6
302 El_Salvador 27696 T 6 6
303 El_Salvador 27697 C 6 6
304 El_Salvador 27698 T 6 6
305 El_Salvador 27699 T 6 6
306 El_Salvador 27700 A 6 6
307 El_Salvador 27701 T 6 6
308 El_Salvador 27702 T 6 6
309 El_Salvador 27703 G 6 6
310 El_Salvador 27704 T 6 6
311 El_Salvador 27705 T 6 6
312 El_Salvador 27706 G 6 6
313 El_Salvador 27707 C 6 6
314 El_Salvador 27708 G 6 6
315 El_Salvador 27709 G 6 6
316 El_Salvador 27710 C 6 6
317 El_Salvador 27711 A 6 6
318 El_Salvador 27712 A 6 6
319 El_Salvador 27713 T 6 6
320 El_Salvador 27714 A 6 6
321 El_Salvador 27715 G 6 6
322 El_Salvador 27716 T 6 6
323 El_Salvador 27717 G 6 6
324 El_Salvador 27718 T 6 6
325 El_Salvador 27719 T 6 6
326 El_Salvador 27720 T 6 6
327 El_Salvador 27721 A 6 6
328 El_Salvador 27722 T 6 6
329 El_Salvador 27723 A 6 6
330 El_Salvador 27724 A 6 6
331 El_Salvador 27725 C 6 6
332 El_Salvador 27726 A 6 6
333 El_Salvador 27727 C 6 6
334 El_Salvador 27728 T 6 6
335 El_Salvador 27729 T 6 6
336 El_Salvador 27730 T 6 6
337 El_Salvador 27731 G 6 6
338 El_Salvador 27732 C 6 6
339 El_Salvador 27733 T 6 6
340 El_Salvador 27734 T 6 6
341 El_Salvador 27735 C 6 6
342 El_Salvador 27736 A 6 6
343 El_Salvador 27737 C 6 6
344 El_Salvador 27738 A 6 6
345 El_Salvador 27739 C 6 6
346 El_Salvador 27740 T 6 6
347 El_Salvador 27741 C 6 6
348 El_Salvador 27742 A 6 6
349 El_Salvador 27743 A 6 6
350 El_Salvador 27744 A 6 6
351 El_Salvador 27745 A 6 6
352 El_Salvador 27746 G 6 6
353 El_Salvador 27747 A 6 6
354 El_Salvador 27748 A 6 6
355 El_Salvador 27749 A 6 6
356 El_Salvador 27750 G 6 6
357 El_Salvador 27751 A 6 6
358 El_Salvador 27752 C 6 6
359 El_Salvador 27753 A 6 6
360 El_Salvador 27754 G 6 6
361 El_Salvador 27755 A 6 6
362 El_Salvador 27756 A 6 6
363 El_Salvador 27757 T 6 6
364 El_Salvador 27758 G 6 6
365 El_Salvador 27759 A 6 6