National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                   1  
C     18                                      
D     6     1                                
E     24                                      
F     30                   1                  
G     12           1                          
H     9                                     1
I     25                                      
K     21                 1                    
L     45         2         2     1            
M     6                                      
N     6                                     1
P     18                   1           3      
Q     15                           1          
R     15                                      
S     21                                      
T     30 1             1                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Egypt 27394 A 366 366
1 Egypt 27395 T 366 366
2 Egypt 27396 G 366 366
3 Egypt 27397 A 366 366
4 Egypt 27398 A 366 366
5 Egypt 27399 A 366 366
6 Egypt 27400 A 366 366
7 Egypt 27401 T 366 366
8 Egypt 27402 T 366 366
9 Egypt 27403 A 366 366
10 Egypt 27404 T 366 366
11 Egypt 27405 T 366 366
12 Egypt 27406 C 366 366
13 Egypt 27407 T 366 366
14 Egypt 27408 T 366 366
15 Egypt 27409 T 366 366
16 Egypt 27410 T 366 366
17 Egypt 27411 C 366 366
18 Egypt 27412 T 366 366
19 Egypt 27413 T 366 366
20 Egypt 27414 G 366 366
21 Egypt 27415 G 366 366
22 Egypt 27416 C 366 366
23 Egypt 27417 A 366 366
24 Egypt 27418 C 366 366
25 Egypt 27419 T 366 366
26 Egypt 27420 G A 366 365 Leu9Leu
27 Egypt 27421 A 366 366
28 Egypt 27422 T 366 366
29 Egypt 27423 A 366 366
30 Egypt 27424 A 366 365
31 Egypt 27425 C 366 366
32 Egypt 27426 A 366 366
33 Egypt 27427 C 366 366
34 Egypt 27428 T C 366 365 Leu12Pro
35 Egypt 27429 C 366 366
36 Egypt 27430 G 366 366
37 Egypt 27431 C 366 366
38 Egypt 27432 T 366 366
39 Egypt 27433 A 366 366
40 Egypt 27434 C T 366 362 Thr14Ile
41 Egypt 27435 T 366 366
42 Egypt 27436 T 366 366
43 Egypt 27437 G 366 366
44 Egypt 27438 T 366 366
45 Egypt 27439 G 366 366
46 Egypt 27440 A 366 366
47 Egypt 27441 G 366 366
48 Egypt 27442 C 366 366
49 Egypt 27443 T 366 366
50 Egypt 27444 T 366 366
51 Egypt 27445 T 366 366
52 Egypt 27446 A 366 366
53 Egypt 27447 T 366 366
54 Egypt 27448 C 366 366
55 Egypt 27449 A 366 366
56 Egypt 27450 C 366 366
57 Egypt 27451 T 366 366
58 Egypt 27452 A 366 366
59 Egypt 27453 C 366 366
60 Egypt 27454 C 366 366
61 Egypt 27455 A 366 366
62 Egypt 27456 A G 366 364 Gln21Gln
63 Egypt 27457 G 366 366
64 Egypt 27458 A 366 366
65 Egypt 27459 G 366 366
66 Egypt 27460 T 366 366
67 Egypt 27461 G 366 366
68 Egypt 27462 T 366 366
69 Egypt 27463 G 366 366
70 Egypt 27464 T 366 366
71 Egypt 27465 T 366 366
72 Egypt 27466 A 366 366
73 Egypt 27467 G 366 366
74 Egypt 27468 A 366 366
75 Egypt 27469 G 366 366
76 Egypt 27470 G 366 366
77 Egypt 27471 T 366 366
78 Egypt 27472 A 366 366
79 Egypt 27473 C 366 366
80 Egypt 27474 A 366 366
81 Egypt 27475 A 366 366
82 Egypt 27476 C 366 366
83 Egypt 27477 A 366 366
84 Egypt 27478 G 366 366
85 Egypt 27479 T 366 366
86 Egypt 27480 A 366 366
87 Egypt 27481 C 366 366
88 Egypt 27482 T 366 366
89 Egypt 27483 T 366 366
90 Egypt 27484 T 366 366
91 Egypt 27485 T 366 366
92 Egypt 27486 A 366 366
93 Egypt 27487 A 366 366
94 Egypt 27488 A 366 366
95 Egypt 27489 A G 366 365 Lys32Lys
96 Egypt 27490 G 366 366
97 Egypt 27491 A 366 366
98 Egypt 27492 A 366 366
99 Egypt 27493 C T 366 365 Pro34Ser
100 Egypt 27494 C 366 366
101 Egypt 27495 T 366 366
102 Egypt 27496 T 366 366
103 Egypt 27497 G 366 366
104 Egypt 27498 C 366 366
105 Egypt 27499 T 366 366
106 Egypt 27500 C 366 366
107 Egypt 27501 T 366 366
108 Egypt 27502 T 366 366
109 Egypt 27503 C 366 366
110 Egypt 27504 T 366 366
111 Egypt 27505 G 366 366
112 Egypt 27506 G 366 366
113 Egypt 27507 A 366 366
114 Egypt 27508 A 366 366
115 Egypt 27509 C 366 366
116 Egypt 27510 A 366 366
117 Egypt 27511 T 366 366
118 Egypt 27512 A 366 366
119 Egypt 27513 C 366 366
120 Egypt 27514 G 366 366
121 Egypt 27515 A 366 366
122 Egypt 27516 G 366 366
123 Egypt 27517 G 366 366
124 Egypt 27518 G 366 366
125 Egypt 27519 C 366 366
126 Egypt 27520 A T 365 364 Asn43Tyr
127 Egypt 27521 A 365 365
128 Egypt 27522 T 365 365
129 Egypt 27523 T 365 365
130 Egypt 27524 C 365 365
131 Egypt 27525 A 365 365
132 Egypt 27526 C 365 365
133 Egypt 27527 C 365 365
134 Egypt 27528 A 364 364
135 Egypt 27529 T 364 364
136 Egypt 27530 T 364 364
137 Egypt 27531 T 364 364
138 Egypt 27532 C 364 364
139 Egypt 27533 A 364 364
140 Egypt 27534 T 364 364
141 Egypt 27535 C 364 364
142 Egypt 27536 C 364 364
143 Egypt 27537 T 364 364
144 Egypt 27538 C 364 364
145 Egypt 27539 T 364 364
146 Egypt 27540 A 364 364
147 Egypt 27541 G 364 364
148 Egypt 27542 C 364 364
149 Egypt 27543 T 364 364
150 Egypt 27544 G 364 364
151 Egypt 27545 A 364 364
152 Egypt 27546 T 364 364
153 Egypt 27547 A 364 364
154 Egypt 27548 A 364 364
155 Egypt 27549 C 364 364
156 Egypt 27550 A 364 364
157 Egypt 27551 A 364 364
158 Egypt 27552 A 364 364
159 Egypt 27553 T 364 364
160 Egypt 27554 T 364 364
161 Egypt 27555 T 364 364
162 Egypt 27556 G 364 364
163 Egypt 27557 C 364 364
164 Egypt 27558 A 364 364
165 Egypt 27559 C T 364 363 Leu56Leu
166 Egypt 27560 T 364 364
167 Egypt 27561 G 364 364
168 Egypt 27562 A 364 364
169 Egypt 27563 C 364 364
170 Egypt 27564 T 364 364
171 Egypt 27565 T 364 364
172 Egypt 27566 G 364 364
173 Egypt 27567 C 364 364
174 Egypt 27568 T 364 364
175 Egypt 27569 T 364 364
176 Egypt 27570 T 364 364
177 Egypt 27571 A 364 364
178 Egypt 27572 G 364 364
179 Egypt 27573 C 364 364
180 Egypt 27574 A 364 364
181 Egypt 27575 C 364 364
182 Egypt 27576 T 364 364
183 Egypt 27577 C 364 364
184 Egypt 27578 A 364 364
185 Egypt 27579 A 364 364
186 Egypt 27580 T 364 364
187 Egypt 27581 T 364 364
188 Egypt 27582 T 364 364
189 Egypt 27583 G 364 364
190 Egypt 27584 C 364 364
191 Egypt 27585 T 364 364
192 Egypt 27586 T 364 364
193 Egypt 27587 T 364 364
194 Egypt 27588 T 364 364
195 Egypt 27589 G 364 364
196 Egypt 27590 C 364 364
197 Egypt 27591 T 364 364
198 Egypt 27592 T 364 364
199 Egypt 27593 G 364 364
200 Egypt 27594 T 364 364
201 Egypt 27595 C 364 364
202 Egypt 27596 C 364 364
203 Egypt 27597 T 364 364
204 Egypt 27598 G 364 364
205 Egypt 27599 A 364 364
206 Egypt 27600 C T 364 363 Asp69Asp
207 Egypt 27601 G 364 364
208 Egypt 27602 G 364 364
209 Egypt 27603 C T 364 363 Gly70Gly
210 Egypt 27604 G 364 364
211 Egypt 27605 T 364 364
212 Egypt 27606 A 364 364
213 Egypt 27607 A 364 364
214 Egypt 27608 A 364 364
215 Egypt 27609 A 364 364
216 Egypt 27610 C T 364 363 His73Tyr
217 Egypt 27611 A 364 364
218 Egypt 27612 C 364 364
219 Egypt 27613 G 364 364
220 Egypt 27614 T 364 364
221 Egypt 27615 C 364 364
222 Egypt 27616 T 364 364
223 Egypt 27617 A 364 364
224 Egypt 27618 T 364 364
225 Egypt 27619 C 364 364
226 Egypt 27620 A 364 364
227 Egypt 27621 G 364 364
228 Egypt 27622 T 364 364
229 Egypt 27623 T 364 364
230 Egypt 27624 A 364 364
231 Egypt 27625 C 364 364
232 Egypt 27626 G 364 364
233 Egypt 27627 T 364 364
234 Egypt 27628 G 364 364
235 Egypt 27629 C 364 364
236 Egypt 27630 C 364 364
237 Egypt 27631 A 364 364
238 Egypt 27632 G 364 364
239 Egypt 27633 A 364 364
240 Egypt 27634 T 364 364
241 Egypt 27635 C 364 363
242 Egypt 27636 A 364 364
243 Egypt 27637 G 364 364
244 Egypt 27638 T 364 364
245 Egypt 27639 T 364 364
246 Egypt 27640 T 364 364
247 Egypt 27641 C 364 364
248 Egypt 27642 A 364 364
249 Egypt 27643 C T 364 363 Pro84Ser
250 Egypt 27644 C 364 364
251 Egypt 27645 T 364 364
252 Egypt 27646 A 364 364
253 Egypt 27647 A 364 364
254 Egypt 27648 A 364 364
255 Egypt 27649 C 364 364
256 Egypt 27650 T 364 364
257 Egypt 27651 G 364 364
258 Egypt 27652 T 364 364
259 Egypt 27653 T 364 364
260 Egypt 27654 C 364 364
261 Egypt 27655 A 364 364
262 Egypt 27656 T 364 364
263 Egypt 27657 C 364 364
264 Egypt 27658 A 364 364
265 Egypt 27659 G 364 364
266 Egypt 27660 A 364 364
267 Egypt 27661 C 364 364
268 Egypt 27662 A 364 364
269 Egypt 27663 A 364 364
270 Egypt 27664 G 364 364
271 Egypt 27665 A 364 364
272 Egypt 27666 G 364 364
273 Egypt 27667 G 364 364
274 Egypt 27668 A 364 364
275 Egypt 27669 A 364 364
276 Egypt 27670 G 364 364
277 Egypt 27671 T 364 364
278 Egypt 27672 T 364 364
279 Egypt 27673 C 364 364
280 Egypt 27674 A 364 364
281 Egypt 27675 A 364 364
282 Egypt 27676 G 364 364
283 Egypt 27677 A 364 364
284 Egypt 27678 A 364 364
285 Egypt 27679 C T 364 363 Leu96Phe
286 Egypt 27680 T 364 364
287 Egypt 27681 T 364 364
288 Egypt 27682 T 364 364
289 Egypt 27683 A 364 364
290 Egypt 27684 C 364 364
291 Egypt 27685 T 364 364
292 Egypt 27686 C 364 364
293 Egypt 27687 T 364 364
294 Egypt 27688 C T 364 362 Pro99Ser
295 Egypt 27689 C T 364 362 Pro99Leu
296 Egypt 27690 A 364 364
297 Egypt 27691 A 364 364
298 Egypt 27692 T 364 364
299 Egypt 27693 T 364 364
300 Egypt 27694 T 364 364
301 Egypt 27695 T 364 364
302 Egypt 27696 T 364 364
303 Egypt 27697 C 364 364
304 Egypt 27698 T 364 364
305 Egypt 27699 T 364 364
306 Egypt 27700 A 364 364
307 Egypt 27701 T 364 364
308 Egypt 27702 T 364 364
309 Egypt 27703 G 364 364
310 Egypt 27704 T 364 364
311 Egypt 27705 T 364 364
312 Egypt 27706 G 364 364
313 Egypt 27707 C T 364 362 Ala105Val
314 Egypt 27708 G 364 364
315 Egypt 27709 G 364 364
316 Egypt 27710 C 364 364
317 Egypt 27711 A 364 364
318 Egypt 27712 A 364 364
319 Egypt 27713 T 364 364
320 Egypt 27714 A 364 364
321 Egypt 27715 G 364 364
322 Egypt 27716 T 364 364
323 Egypt 27717 G 364 364
324 Egypt 27718 T C 364 363 Phe109Leu
325 Egypt 27719 T 364 364
326 Egypt 27720 T 364 364
327 Egypt 27721 A 364 364
328 Egypt 27722 T 364 364
329 Egypt 27723 A 364 364
330 Egypt 27724 A G 364 362 Thr111Ala
331 Egypt 27725 C 364 364
332 Egypt 27726 A 364 364
333 Egypt 27727 C 364 364
334 Egypt 27728 T 364 364
335 Egypt 27729 T 364 364
336 Egypt 27730 T 364 364
337 Egypt 27731 G 364 364
338 Egypt 27732 C 364 364
339 Egypt 27733 T 364 364
340 Egypt 27734 T 364 364
341 Egypt 27735 C 364 364
342 Egypt 27736 A 364 364
343 Egypt 27737 C 364 364
344 Egypt 27738 A 364 364
345 Egypt 27739 C T 364 362 Leu116Phe
346 Egypt 27740 T 364 364
347 Egypt 27741 C 364 362
348 Egypt 27742 A 364 364
349 Egypt 27743 A 364 364
350 Egypt 27744 A 364 364
351 Egypt 27745 A 364 364
352 Egypt 27746 G 364 364
353 Egypt 27747 A 364 364
354 Egypt 27748 A 364 364
355 Egypt 27749 A 364 364
356 Egypt 27750 G 364 364
357 Egypt 27751 A 364 364
358 Egypt 27752 C 364 363
359 Egypt 27753 A 364 364
360 Egypt 27754 G 364 364
361 Egypt 27755 A 364 364
362 Egypt 27756 A 364 364
363 Egypt 27757 T 364 364
364 Egypt 27758 G 364 364
365 Egypt 27759 A 364 364