National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Croatia 27394 A 50 50
1 Croatia 27395 T 50 50
2 Croatia 27396 G 50 50
3 Croatia 27397 A 50 50
4 Croatia 27398 A 50 50
5 Croatia 27399 A 50 50
6 Croatia 27400 A 50 50
7 Croatia 27401 T 50 50
8 Croatia 27402 T 50 50
9 Croatia 27403 A 50 50
10 Croatia 27404 T 50 50
11 Croatia 27405 T 50 50
12 Croatia 27406 C 50 50
13 Croatia 27407 T 50 50
14 Croatia 27408 T 50 50
15 Croatia 27409 T 50 50
16 Croatia 27410 T 50 50
17 Croatia 27411 C 50 50
18 Croatia 27412 T 50 50
19 Croatia 27413 T 50 50
20 Croatia 27414 G 50 50
21 Croatia 27415 G 50 50
22 Croatia 27416 C 50 50
23 Croatia 27417 A 50 50
24 Croatia 27418 C 50 50
25 Croatia 27419 T 50 50
26 Croatia 27420 G 50 50
27 Croatia 27421 A 50 50
28 Croatia 27422 T 50 50
29 Croatia 27423 A 50 50
30 Croatia 27424 A 50 50
31 Croatia 27425 C 50 50
32 Croatia 27426 A 50 50
33 Croatia 27427 C 50 50
34 Croatia 27428 T 50 50
35 Croatia 27429 C 50 50
36 Croatia 27430 G 50 50
37 Croatia 27431 C 50 50
38 Croatia 27432 T 50 50
39 Croatia 27433 A 50 50
40 Croatia 27434 C 50 50
41 Croatia 27435 T 50 50
42 Croatia 27436 T 50 50
43 Croatia 27437 G 50 50
44 Croatia 27438 T 50 50
45 Croatia 27439 G 50 50
46 Croatia 27440 A 50 50
47 Croatia 27441 G 50 50
48 Croatia 27442 C 50 50
49 Croatia 27443 T 50 50
50 Croatia 27444 T 50 50
51 Croatia 27445 T 50 50
52 Croatia 27446 A 50 50
53 Croatia 27447 T 50 50
54 Croatia 27448 C 50 50
55 Croatia 27449 A 50 50
56 Croatia 27450 C 50 50
57 Croatia 27451 T 50 50
58 Croatia 27452 A 50 50
59 Croatia 27453 C 50 50
60 Croatia 27454 C 50 50
61 Croatia 27455 A 50 50
62 Croatia 27456 A 50 50
63 Croatia 27457 G 50 50
64 Croatia 27458 A 50 50
65 Croatia 27459 G 50 50
66 Croatia 27460 T 50 50
67 Croatia 27461 G 50 50
68 Croatia 27462 T 50 50
69 Croatia 27463 G 50 50
70 Croatia 27464 T 50 50
71 Croatia 27465 T 50 50
72 Croatia 27466 A 50 50
73 Croatia 27467 G 50 50
74 Croatia 27468 A 50 50
75 Croatia 27469 G 50 50
76 Croatia 27470 G 50 50
77 Croatia 27471 T 50 50
78 Croatia 27472 A 50 50
79 Croatia 27473 C 50 50
80 Croatia 27474 A 50 50
81 Croatia 27475 A 50 50
82 Croatia 27476 C 50 50
83 Croatia 27477 A 50 50
84 Croatia 27478 G 50 50
85 Croatia 27479 T 50 50
86 Croatia 27480 A 50 50
87 Croatia 27481 C 50 50
88 Croatia 27482 T 50 50
89 Croatia 27483 T 50 50
90 Croatia 27484 T 50 50
91 Croatia 27485 T 50 50
92 Croatia 27486 A 50 50
93 Croatia 27487 A 50 50
94 Croatia 27488 A 50 50
95 Croatia 27489 A 50 50
96 Croatia 27490 G 50 50
97 Croatia 27491 A 50 50
98 Croatia 27492 A 50 50
99 Croatia 27493 C 50 50
100 Croatia 27494 C 50 50
101 Croatia 27495 T 50 50
102 Croatia 27496 T 50 50
103 Croatia 27497 G 50 50
104 Croatia 27498 C 50 50
105 Croatia 27499 T 50 50
106 Croatia 27500 C 50 50
107 Croatia 27501 T 50 50
108 Croatia 27502 T 50 50
109 Croatia 27503 C 50 50
110 Croatia 27504 T 50 50
111 Croatia 27505 G 50 50
112 Croatia 27506 G 50 50
113 Croatia 27507 A 50 50
114 Croatia 27508 A 50 50
115 Croatia 27509 C 50 50
116 Croatia 27510 A 50 50
117 Croatia 27511 T 50 50
118 Croatia 27512 A 50 50
119 Croatia 27513 C 50 50
120 Croatia 27514 G 50 50
121 Croatia 27515 A 50 50
122 Croatia 27516 G 50 50
123 Croatia 27517 G 50 50
124 Croatia 27518 G 50 50
125 Croatia 27519 C 50 50
126 Croatia 27520 A 50 50
127 Croatia 27521 A 50 50
128 Croatia 27522 T 50 50
129 Croatia 27523 T 50 50
130 Croatia 27524 C 50 50
131 Croatia 27525 A 50 50
132 Croatia 27526 C 50 50
133 Croatia 27527 C 50 50
134 Croatia 27528 A 50 50
135 Croatia 27529 T 50 50
136 Croatia 27530 T 50 50
137 Croatia 27531 T 50 50
138 Croatia 27532 C 50 50
139 Croatia 27533 A 50 50
140 Croatia 27534 T 50 50
141 Croatia 27535 C 50 50
142 Croatia 27536 C 50 50
143 Croatia 27537 T 50 50
144 Croatia 27538 C 50 50
145 Croatia 27539 T 50 50
146 Croatia 27540 A 50 50
147 Croatia 27541 G 50 50
148 Croatia 27542 C 50 50
149 Croatia 27543 T 50 50
150 Croatia 27544 G 50 50
151 Croatia 27545 A 50 50
152 Croatia 27546 T 50 50
153 Croatia 27547 A 50 50
154 Croatia 27548 A 50 50
155 Croatia 27549 C 50 50
156 Croatia 27550 A 50 50
157 Croatia 27551 A 50 50
158 Croatia 27552 A 50 50
159 Croatia 27553 T 50 50
160 Croatia 27554 T 50 50
161 Croatia 27555 T 50 50
162 Croatia 27556 G 50 50
163 Croatia 27557 C 50 50
164 Croatia 27558 A 50 50
165 Croatia 27559 C 50 50
166 Croatia 27560 T 50 50
167 Croatia 27561 G 50 50
168 Croatia 27562 A 50 50
169 Croatia 27563 C 50 50
170 Croatia 27564 T 50 50
171 Croatia 27565 T 50 50
172 Croatia 27566 G 50 50
173 Croatia 27567 C 50 50
174 Croatia 27568 T 50 50
175 Croatia 27569 T 50 50
176 Croatia 27570 T 50 50
177 Croatia 27571 A 50 50
178 Croatia 27572 G 50 50
179 Croatia 27573 C 50 50
180 Croatia 27574 A 50 50
181 Croatia 27575 C 50 50
182 Croatia 27576 T 50 50
183 Croatia 27577 C 50 50
184 Croatia 27578 A 50 50
185 Croatia 27579 A 50 50
186 Croatia 27580 T 50 50
187 Croatia 27581 T 50 50
188 Croatia 27582 T 50 50
189 Croatia 27583 G 50 50
190 Croatia 27584 C 50 50
191 Croatia 27585 T 50 50
192 Croatia 27586 T 50 50
193 Croatia 27587 T 50 50
194 Croatia 27588 T 50 50
195 Croatia 27589 G 50 50
196 Croatia 27590 C 50 50
197 Croatia 27591 T 50 50
198 Croatia 27592 T 50 50
199 Croatia 27593 G 50 50
200 Croatia 27594 T 50 50
201 Croatia 27595 C 50 50
202 Croatia 27596 C 50 50
203 Croatia 27597 T 50 50
204 Croatia 27598 G 50 50
205 Croatia 27599 A 50 50
206 Croatia 27600 C 50 50
207 Croatia 27601 G 50 50
208 Croatia 27602 G 50 50
209 Croatia 27603 C 50 50
210 Croatia 27604 G 50 50
211 Croatia 27605 T 50 50
212 Croatia 27606 A 50 50
213 Croatia 27607 A 50 50
214 Croatia 27608 A 50 50
215 Croatia 27609 A 50 50
216 Croatia 27610 C 50 50
217 Croatia 27611 A 50 50
218 Croatia 27612 C 50 50
219 Croatia 27613 G 50 50
220 Croatia 27614 T 50 50
221 Croatia 27615 C 50 50
222 Croatia 27616 T 50 50
223 Croatia 27617 A 50 50
224 Croatia 27618 T 50 50
225 Croatia 27619 C 50 50
226 Croatia 27620 A 50 50
227 Croatia 27621 G 50 50
228 Croatia 27622 T 50 50
229 Croatia 27623 T 50 50
230 Croatia 27624 A 50 50
231 Croatia 27625 C 50 50
232 Croatia 27626 G 50 50
233 Croatia 27627 T 50 50
234 Croatia 27628 G 50 50
235 Croatia 27629 C 50 50
236 Croatia 27630 C 50 50
237 Croatia 27631 A 50 50
238 Croatia 27632 G 50 50
239 Croatia 27633 A 50 50
240 Croatia 27634 T 50 50
241 Croatia 27635 C 50 50
242 Croatia 27636 A 50 50
243 Croatia 27637 G 50 50
244 Croatia 27638 T 50 50
245 Croatia 27639 T 50 50
246 Croatia 27640 T 50 50
247 Croatia 27641 C 50 50
248 Croatia 27642 A 50 50
249 Croatia 27643 C 50 50
250 Croatia 27644 C 50 50
251 Croatia 27645 T 50 50
252 Croatia 27646 A 50 50
253 Croatia 27647 A 50 50
254 Croatia 27648 A 50 50
255 Croatia 27649 C 50 50
256 Croatia 27650 T 50 50
257 Croatia 27651 G 50 50
258 Croatia 27652 T 50 50
259 Croatia 27653 T 50 50
260 Croatia 27654 C 50 50
261 Croatia 27655 A 50 50
262 Croatia 27656 T 50 50
263 Croatia 27657 C 50 50
264 Croatia 27658 A 50 50
265 Croatia 27659 G 50 50
266 Croatia 27660 A 50 50
267 Croatia 27661 C 50 50
268 Croatia 27662 A 50 50
269 Croatia 27663 A 50 50
270 Croatia 27664 G 50 50
271 Croatia 27665 A 50 50
272 Croatia 27666 G 50 50
273 Croatia 27667 G 50 50
274 Croatia 27668 A 50 50
275 Croatia 27669 A 50 50
276 Croatia 27670 G 50 50
277 Croatia 27671 T 50 50
278 Croatia 27672 T 50 50
279 Croatia 27673 C 50 50
280 Croatia 27674 A 50 50
281 Croatia 27675 A 50 50
282 Croatia 27676 G 50 50
283 Croatia 27677 A 50 50
284 Croatia 27678 A 50 50
285 Croatia 27679 C 50 50
286 Croatia 27680 T 50 50
287 Croatia 27681 T 50 50
288 Croatia 27682 T 50 50
289 Croatia 27683 A 50 50
290 Croatia 27684 C 50 50
291 Croatia 27685 T 50 50
292 Croatia 27686 C 50 50
293 Croatia 27687 T 50 50
294 Croatia 27688 C 50 50
295 Croatia 27689 C 50 50
296 Croatia 27690 A 50 50
297 Croatia 27691 A 50 50
298 Croatia 27692 T 50 50
299 Croatia 27693 T 50 50
300 Croatia 27694 T 50 50
301 Croatia 27695 T 50 50
302 Croatia 27696 T 50 50
303 Croatia 27697 C 50 50
304 Croatia 27698 T 50 50
305 Croatia 27699 T 50 50
306 Croatia 27700 A 50 50
307 Croatia 27701 T 50 50
308 Croatia 27702 T 50 50
309 Croatia 27703 G 50 50
310 Croatia 27704 T 50 50
311 Croatia 27705 T 50 50
312 Croatia 27706 G 50 50
313 Croatia 27707 C 50 50
314 Croatia 27708 G 50 50
315 Croatia 27709 G 50 50
316 Croatia 27710 C 50 50
317 Croatia 27711 A 50 50
318 Croatia 27712 A 50 50
319 Croatia 27713 T 50 50
320 Croatia 27714 A 50 50
321 Croatia 27715 G 50 50
322 Croatia 27716 T 50 50
323 Croatia 27717 G 50 50
324 Croatia 27718 T 50 50
325 Croatia 27719 T 50 50
326 Croatia 27720 T 50 50
327 Croatia 27721 A 50 50
328 Croatia 27722 T 50 50
329 Croatia 27723 A 50 50
330 Croatia 27724 A 50 50
331 Croatia 27725 C 50 50
332 Croatia 27726 A 50 50
333 Croatia 27727 C 50 50
334 Croatia 27728 T 50 50
335 Croatia 27729 T 50 50
336 Croatia 27730 T 50 50
337 Croatia 27731 G 50 50
338 Croatia 27732 C 50 50
339 Croatia 27733 T 50 50
340 Croatia 27734 T 50 50
341 Croatia 27735 C 50 50
342 Croatia 27736 A 50 50
343 Croatia 27737 C 50 50
344 Croatia 27738 A 50 50
345 Croatia 27739 C 50 50
346 Croatia 27740 T 50 50
347 Croatia 27741 C 50 50
348 Croatia 27742 A 50 50
349 Croatia 27743 A 50 50
350 Croatia 27744 A 50 50
351 Croatia 27745 A 50 50
352 Croatia 27746 G 50 50
353 Croatia 27747 A 50 50
354 Croatia 27748 A 50 50
355 Croatia 27749 A 50 50
356 Croatia 27750 G 50 50
357 Croatia 27751 A 50 50
358 Croatia 27752 C 50 50
359 Croatia 27753 A 50 50
360 Croatia 27754 G 50 50
361 Croatia 27755 A 50 50
362 Croatia 27756 A 50 50
363 Croatia 27757 T 50 50
364 Croatia 27758 G 50 50
365 Croatia 27759 A 50 50