National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 1                                    
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30               1                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 CotedIvoire 27394 A 65 65
1 CotedIvoire 27395 T 65 65
2 CotedIvoire 27396 G 65 65
3 CotedIvoire 27397 A 65 65
4 CotedIvoire 27398 A 65 65
5 CotedIvoire 27399 A 65 65
6 CotedIvoire 27400 A 65 65
7 CotedIvoire 27401 T 65 65
8 CotedIvoire 27402 T 65 65
9 CotedIvoire 27403 A 65 65
10 CotedIvoire 27404 T 65 65
11 CotedIvoire 27405 T 65 65
12 CotedIvoire 27406 C 65 65
13 CotedIvoire 27407 T 65 65
14 CotedIvoire 27408 T 65 65
15 CotedIvoire 27409 T 65 65
16 CotedIvoire 27410 T 65 65
17 CotedIvoire 27411 C 65 65
18 CotedIvoire 27412 T 65 65
19 CotedIvoire 27413 T 65 65
20 CotedIvoire 27414 G 65 65
21 CotedIvoire 27415 G 65 65
22 CotedIvoire 27416 C 65 65
23 CotedIvoire 27417 A 65 65
24 CotedIvoire 27418 C 65 65
25 CotedIvoire 27419 T 65 65
26 CotedIvoire 27420 G 65 65
27 CotedIvoire 27421 A 65 65
28 CotedIvoire 27422 T 65 65
29 CotedIvoire 27423 A 65 65
30 CotedIvoire 27424 A 65 65
31 CotedIvoire 27425 C 65 65
32 CotedIvoire 27426 A 65 65
33 CotedIvoire 27427 C 65 65
34 CotedIvoire 27428 T 65 65
35 CotedIvoire 27429 C 65 65
36 CotedIvoire 27430 G 65 65
37 CotedIvoire 27431 C 65 65
38 CotedIvoire 27432 T 65 65
39 CotedIvoire 27433 A 65 65
40 CotedIvoire 27434 C 65 65
41 CotedIvoire 27435 T 65 65
42 CotedIvoire 27436 T 65 65
43 CotedIvoire 27437 G 65 65
44 CotedIvoire 27438 T 65 65
45 CotedIvoire 27439 G 65 65
46 CotedIvoire 27440 A 65 65
47 CotedIvoire 27441 G 65 65
48 CotedIvoire 27442 C 65 65
49 CotedIvoire 27443 T 65 65
50 CotedIvoire 27444 T 65 65
51 CotedIvoire 27445 T 65 65
52 CotedIvoire 27446 A 65 65
53 CotedIvoire 27447 T 65 65
54 CotedIvoire 27448 C 65 65
55 CotedIvoire 27449 A 65 65
56 CotedIvoire 27450 C 65 65
57 CotedIvoire 27451 T 65 65
58 CotedIvoire 27452 A 65 65
59 CotedIvoire 27453 C 65 65
60 CotedIvoire 27454 C 65 65
61 CotedIvoire 27455 A 65 65
62 CotedIvoire 27456 A 65 65
63 CotedIvoire 27457 G 65 65
64 CotedIvoire 27458 A 65 65
65 CotedIvoire 27459 G 65 65
66 CotedIvoire 27460 T 65 65
67 CotedIvoire 27461 G 65 65
68 CotedIvoire 27462 T 65 65
69 CotedIvoire 27463 G 65 65
70 CotedIvoire 27464 T 65 65
71 CotedIvoire 27465 T 65 65
72 CotedIvoire 27466 A 65 65
73 CotedIvoire 27467 G 65 65
74 CotedIvoire 27468 A 65 65
75 CotedIvoire 27469 G 65 65
76 CotedIvoire 27470 G 65 65
77 CotedIvoire 27471 T 65 65
78 CotedIvoire 27472 A 65 65
79 CotedIvoire 27473 C 65 65
80 CotedIvoire 27474 A 65 65
81 CotedIvoire 27475 A 65 65
82 CotedIvoire 27476 C 65 65
83 CotedIvoire 27477 A 65 65
84 CotedIvoire 27478 G 65 65
85 CotedIvoire 27479 T 65 65
86 CotedIvoire 27480 A 65 65
87 CotedIvoire 27481 C 65 65
88 CotedIvoire 27482 T 65 65
89 CotedIvoire 27483 T 65 65
90 CotedIvoire 27484 T 65 65
91 CotedIvoire 27485 T 65 65
92 CotedIvoire 27486 A 65 65
93 CotedIvoire 27487 A 65 65
94 CotedIvoire 27488 A 65 65
95 CotedIvoire 27489 A 65 65
96 CotedIvoire 27490 G 65 65
97 CotedIvoire 27491 A 65 65
98 CotedIvoire 27492 A 65 65
99 CotedIvoire 27493 C 65 65
100 CotedIvoire 27494 C 65 65
101 CotedIvoire 27495 T 65 65
102 CotedIvoire 27496 T 65 65
103 CotedIvoire 27497 G 65 65
104 CotedIvoire 27498 C 65 65
105 CotedIvoire 27499 T 65 65
106 CotedIvoire 27500 C 65 65
107 CotedIvoire 27501 T 65 65
108 CotedIvoire 27502 T 65 65
109 CotedIvoire 27503 C 65 65
110 CotedIvoire 27504 T 65 65
111 CotedIvoire 27505 G 65 65
112 CotedIvoire 27506 G 65 65
113 CotedIvoire 27507 A 65 65
114 CotedIvoire 27508 A 65 65
115 CotedIvoire 27509 C 65 65
116 CotedIvoire 27510 A 65 65
117 CotedIvoire 27511 T 65 65
118 CotedIvoire 27512 A 59 59
119 CotedIvoire 27513 C 59 59
120 CotedIvoire 27514 G 59 59
121 CotedIvoire 27515 A 59 59
122 CotedIvoire 27516 G 59 59
123 CotedIvoire 27517 G 59 59
124 CotedIvoire 27518 G 59 59
125 CotedIvoire 27519 C 59 59
126 CotedIvoire 27520 A 59 59
127 CotedIvoire 27521 A 59 59
128 CotedIvoire 27522 T 59 59
129 CotedIvoire 27523 T 59 59
130 CotedIvoire 27524 C 59 59
131 CotedIvoire 27525 A 59 59
132 CotedIvoire 27526 C 59 59
133 CotedIvoire 27527 C 59 59
134 CotedIvoire 27528 A 59 59
135 CotedIvoire 27529 T 59 59
136 CotedIvoire 27530 T 59 59
137 CotedIvoire 27531 T 59 59
138 CotedIvoire 27532 C 59 59
139 CotedIvoire 27533 A 59 59
140 CotedIvoire 27534 T 59 59
141 CotedIvoire 27535 C 59 59
142 CotedIvoire 27536 C 59 59
143 CotedIvoire 27537 T 59 59
144 CotedIvoire 27538 C 59 59
145 CotedIvoire 27539 T 59 59
146 CotedIvoire 27540 A 59 59
147 CotedIvoire 27541 G 59 59
148 CotedIvoire 27542 C 59 59
149 CotedIvoire 27543 T 59 59
150 CotedIvoire 27544 G 59 59
151 CotedIvoire 27545 A 59 59
152 CotedIvoire 27546 T 59 59
153 CotedIvoire 27547 A 59 59
154 CotedIvoire 27548 A 59 59
155 CotedIvoire 27549 C 59 59
156 CotedIvoire 27550 A 59 59
157 CotedIvoire 27551 A 59 59
158 CotedIvoire 27552 A 59 59
159 CotedIvoire 27553 T 59 59
160 CotedIvoire 27554 T 59 59
161 CotedIvoire 27555 T 59 59
162 CotedIvoire 27556 G 59 59
163 CotedIvoire 27557 C 59 59
164 CotedIvoire 27558 A 59 59
165 CotedIvoire 27559 C 59 59
166 CotedIvoire 27560 T 59 59
167 CotedIvoire 27561 G 59 59
168 CotedIvoire 27562 A 59 59
169 CotedIvoire 27563 C 59 59
170 CotedIvoire 27564 T 59 59
171 CotedIvoire 27565 T 59 59
172 CotedIvoire 27566 G 59 59
173 CotedIvoire 27567 C 59 59
174 CotedIvoire 27568 T 59 59
175 CotedIvoire 27569 T 59 59
176 CotedIvoire 27570 T 59 59
177 CotedIvoire 27571 A 59 59
178 CotedIvoire 27572 G 59 59
179 CotedIvoire 27573 C 59 59
180 CotedIvoire 27574 A 59 59
181 CotedIvoire 27575 C 59 59
182 CotedIvoire 27576 T 59 59
183 CotedIvoire 27577 C 59 59
184 CotedIvoire 27578 A 59 59
185 CotedIvoire 27579 A 59 59
186 CotedIvoire 27580 T 59 59
187 CotedIvoire 27581 T 59 59
188 CotedIvoire 27582 T 59 59
189 CotedIvoire 27583 G 59 59
190 CotedIvoire 27584 C 59 59
191 CotedIvoire 27585 T 59 59
192 CotedIvoire 27586 T 59 59
193 CotedIvoire 27587 T 59 59
194 CotedIvoire 27588 T 59 59
195 CotedIvoire 27589 G 59 59
196 CotedIvoire 27590 C 59 59
197 CotedIvoire 27591 T 59 59
198 CotedIvoire 27592 T 59 59
199 CotedIvoire 27593 G 59 59
200 CotedIvoire 27594 T 59 59
201 CotedIvoire 27595 C 59 59
202 CotedIvoire 27596 C 59 59
203 CotedIvoire 27597 T 59 59
204 CotedIvoire 27598 G 59 59
205 CotedIvoire 27599 A 59 59
206 CotedIvoire 27600 C 59 59
207 CotedIvoire 27601 G 59 59
208 CotedIvoire 27602 G 59 59
209 CotedIvoire 27603 C 59 59
210 CotedIvoire 27604 G 59 59
211 CotedIvoire 27605 T 59 59
212 CotedIvoire 27606 A 59 59
213 CotedIvoire 27607 A 59 59
214 CotedIvoire 27608 A 59 59
215 CotedIvoire 27609 A 59 59
216 CotedIvoire 27610 C 59 59
217 CotedIvoire 27611 A 59 59
218 CotedIvoire 27612 C 59 59
219 CotedIvoire 27613 G 59 59
220 CotedIvoire 27614 T 59 59
221 CotedIvoire 27615 C 59 59
222 CotedIvoire 27616 T 59 59
223 CotedIvoire 27617 A 59 59
224 CotedIvoire 27618 T 59 59
225 CotedIvoire 27619 C 59 59
226 CotedIvoire 27620 A 59 59
227 CotedIvoire 27621 G 59 59
228 CotedIvoire 27622 T 59 59
229 CotedIvoire 27623 T 59 59
230 CotedIvoire 27624 A 59 59
231 CotedIvoire 27625 C 59 59
232 CotedIvoire 27626 G 59 59
233 CotedIvoire 27627 T 59 59
234 CotedIvoire 27628 G 59 59
235 CotedIvoire 27629 C 59 59
236 CotedIvoire 27630 C T 59 58 Ala79Ala
237 CotedIvoire 27631 A 59 59
238 CotedIvoire 27632 G 59 59
239 CotedIvoire 27633 A 59 59
240 CotedIvoire 27634 T 59 59
241 CotedIvoire 27635 C 59 59
242 CotedIvoire 27636 A 59 59
243 CotedIvoire 27637 G 59 59
244 CotedIvoire 27638 T 59 59
245 CotedIvoire 27639 T 59 59
246 CotedIvoire 27640 T 59 59
247 CotedIvoire 27641 C 59 59
248 CotedIvoire 27642 A 59 59
249 CotedIvoire 27643 C 59 59
250 CotedIvoire 27644 C 59 59
251 CotedIvoire 27645 T 59 59
252 CotedIvoire 27646 A 59 59
253 CotedIvoire 27647 A 59 59
254 CotedIvoire 27648 A 59 59
255 CotedIvoire 27649 C 59 59
256 CotedIvoire 27650 T 59 59
257 CotedIvoire 27651 G 59 59
258 CotedIvoire 27652 T 59 59
259 CotedIvoire 27653 T 59 59
260 CotedIvoire 27654 C 59 59
261 CotedIvoire 27655 A 59 59
262 CotedIvoire 27656 T 59 59
263 CotedIvoire 27657 C 59 59
264 CotedIvoire 27658 A 59 59
265 CotedIvoire 27659 G 59 59
266 CotedIvoire 27660 A 59 59
267 CotedIvoire 27661 C 59 59
268 CotedIvoire 27662 A 59 59
269 CotedIvoire 27663 A 59 59
270 CotedIvoire 27664 G 59 59
271 CotedIvoire 27665 A 59 59
272 CotedIvoire 27666 G 59 59
273 CotedIvoire 27667 G 59 59
274 CotedIvoire 27668 A 59 59
275 CotedIvoire 27669 A 59 59
276 CotedIvoire 27670 G 59 59
277 CotedIvoire 27671 T 59 59
278 CotedIvoire 27672 T 59 59
279 CotedIvoire 27673 C 59 59
280 CotedIvoire 27674 A 59 59
281 CotedIvoire 27675 A 59 59
282 CotedIvoire 27676 G 59 59
283 CotedIvoire 27677 A 59 59
284 CotedIvoire 27678 A 59 59
285 CotedIvoire 27679 C 59 59
286 CotedIvoire 27680 T 59 59
287 CotedIvoire 27681 T 59 59
288 CotedIvoire 27682 T 59 59
289 CotedIvoire 27683 A 59 59
290 CotedIvoire 27684 C 59 59
291 CotedIvoire 27685 T 59 59
292 CotedIvoire 27686 C 59 59
293 CotedIvoire 27687 T 59 59
294 CotedIvoire 27688 C 59 58
295 CotedIvoire 27689 C 59 59
296 CotedIvoire 27690 A 59 59
297 CotedIvoire 27691 A 59 59
298 CotedIvoire 27692 T 59 59
299 CotedIvoire 27693 T 59 59
300 CotedIvoire 27694 T 59 59
301 CotedIvoire 27695 T 59 59
302 CotedIvoire 27696 T 59 59
303 CotedIvoire 27697 C 59 59
304 CotedIvoire 27698 T 59 59
305 CotedIvoire 27699 T 59 59
306 CotedIvoire 27700 A 59 59
307 CotedIvoire 27701 T 59 59
308 CotedIvoire 27702 T 59 59
309 CotedIvoire 27703 G 59 59
310 CotedIvoire 27704 T 59 59
311 CotedIvoire 27705 T 59 59
312 CotedIvoire 27706 G 59 59
313 CotedIvoire 27707 C 59 59
314 CotedIvoire 27708 G 59 59
315 CotedIvoire 27709 G 59 59
316 CotedIvoire 27710 C 59 59
317 CotedIvoire 27711 A 59 59
318 CotedIvoire 27712 A 59 59
319 CotedIvoire 27713 T 59 59
320 CotedIvoire 27714 A 59 59
321 CotedIvoire 27715 G 59 59
322 CotedIvoire 27716 T 59 59
323 CotedIvoire 27717 G 59 59
324 CotedIvoire 27718 T 59 59
325 CotedIvoire 27719 T 59 59
326 CotedIvoire 27720 T 59 59
327 CotedIvoire 27721 A 59 59
328 CotedIvoire 27722 T 59 59
329 CotedIvoire 27723 A 59 59
330 CotedIvoire 27724 A 59 59
331 CotedIvoire 27725 C 59 59
332 CotedIvoire 27726 A 59 59
333 CotedIvoire 27727 C 59 59
334 CotedIvoire 27728 T 59 59
335 CotedIvoire 27729 T 59 59
336 CotedIvoire 27730 T 59 59
337 CotedIvoire 27731 G 59 59
338 CotedIvoire 27732 C 59 59
339 CotedIvoire 27733 T 59 59
340 CotedIvoire 27734 T 59 59
341 CotedIvoire 27735 C 59 59
342 CotedIvoire 27736 A 59 59
343 CotedIvoire 27737 C T 59 58 Thr115Ile
344 CotedIvoire 27738 A 59 59
345 CotedIvoire 27739 C 59 59
346 CotedIvoire 27740 T 59 59
347 CotedIvoire 27741 C 59 59
348 CotedIvoire 27742 A 59 59
349 CotedIvoire 27743 A 59 59
350 CotedIvoire 27744 A 59 59
351 CotedIvoire 27745 A 59 59
352 CotedIvoire 27746 G 59 59
353 CotedIvoire 27747 A 59 59
354 CotedIvoire 27748 A 59 59
355 CotedIvoire 27749 A 59 59
356 CotedIvoire 27750 G 59 59
357 CotedIvoire 27751 A 59 59
358 CotedIvoire 27752 C 59 59
359 CotedIvoire 27753 A 59 59
360 CotedIvoire 27754 G 59 59
361 CotedIvoire 27755 A 59 59
362 CotedIvoire 27756 A 59 59
363 CotedIvoire 27757 T 59 59
364 CotedIvoire 27758 G 59 59
365 CotedIvoire 27759 A 59 59