National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3           1                          
-     370                                      
?                                            
A     27 6                                 1  
C     18   2                                  
D     6     2                                
E 1   24     2 1                              
F     30         1     1   1           2      
G     12           1                          
H     9             3             2          
I     25         1     3   2               1  
K     21                 3                    
L     45               1   12                  
M     6               1             1        
N     6                       2              
P     18 1                       4     1      
Q 1   15             1           1            
R     15               1 1           2        
S     21 1                       1     2      
T     30 1             2 1     1 1       4    
V     24 1   1         4                   3  
Y     15         1                           3

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 China 27394 A 936 936
1 China 27395 T 936 936
2 China 27396 G T 936 935 Met1?
3 China 27397 A 936 936
4 China 27398 A 936 936
5 China 27399 A 936 936
6 China 27400 A 936 936
7 China 27401 T 936 936
8 China 27402 T 936 936
9 China 27403 A 936 936
10 China 27404 T 936 936
11 China 27405 T 936 936
12 China 27406 C 936 936
13 China 27407 T 936 936
14 China 27408 T 936 936
15 China 27409 T 936 935
16 China 27410 T 936 936
17 China 27411 C 936 936
18 China 27412 T 936 936
19 China 27413 T 936 936
20 China 27414 G 936 936
21 China 27415 G 936 936
22 China 27416 C T 936 935 Ala8Val
23 China 27417 A 936 936
24 China 27418 C T 936 928 Leu9Leu
25 China 27419 T 936 936
26 China 27420 G 936 936
27 China 27421 A G 936 935 Ile10Val
28 China 27422 T 936 936
29 China 27423 A 936 936
30 China 27424 A 936 936
31 China 27425 C 936 936
32 China 27426 A 936 936
33 China 27427 C 936 936
34 China 27428 T 936 936
35 China 27429 C T 936 927 Leu12Leu
36 China 27430 G 936 936
37 China 27431 C 936 936
38 China 27432 T 936 936
39 China 27433 A 936 936
40 China 27434 C 936 936
41 China 27435 T 936 936
42 China 27436 T 936 936
43 China 27437 G 936 936
44 China 27438 T 936 936
45 China 27439 G 936 936
46 China 27440 A 936 936
47 China 27441 G 936 936
48 China 27442 C 936 936
49 China 27443 T 936 936
50 China 27444 T 936 936
51 China 27445 T 936 936
52 China 27446 A 936 936
53 China 27447 T 936 936
54 China 27448 C 942 942
55 China 27449 A 942 942
56 China 27450 C T 942 935 His19His
57 China 27451 T 942 942
58 China 27452 A 942 942
59 China 27453 C T 942 935 Tyr20Tyr
60 China 27454 C 942 942
61 China 27455 A 942 942
62 China 27456 A 942 942
63 China 27457 G 943 943
64 China 27458 A 943 943
65 China 27459 G 943 943
66 China 27460 T 943 943
67 China 27461 G 943 943
68 China 27462 T 943 943
69 China 27463 G 943 943
70 China 27464 T 943 943
71 China 27465 T 943 943
72 China 27466 A 943 943
73 China 27467 G 943 943
74 China 27468 A 943 943
75 China 27469 G 943 943
76 China 27470 G 943 943
77 China 27471 T 943 943
78 China 27472 A 943 943
79 China 27473 C 943 943
80 China 27474 A 943 943
81 China 27475 A 943 943
82 China 27476 C 943 943
83 China 27477 A T 943 936 Thr28Thr
84 China 27478 G 943 943
85 China 27479 T 943 943
86 China 27480 A 943 943
87 China 27481 C 943 943
88 China 27482 T 943 943
89 China 27483 T A 943 936 Leu30Leu
90 China 27484 T A,C 943 936 Leu31Ile-p.Leu31Leu
91 China 27485 T 943 943
92 China 27486 A 943 943
93 China 27487 A 943 943
94 China 27488 A 943 943
95 China 27489 A G 943 937 Lys32Lys
96 China 27490 G 943 943
97 China 27491 A 943 943
98 China 27492 A 943 943
99 China 27493 C T 943 942 Pro34Ser
100 China 27494 C 943 943
101 China 27495 T 943 943
102 China 27496 T 943 943
103 China 27497 G 943 943
104 China 27498 C 943 943
105 China 27499 T C 943 942 Ser36Pro
106 China 27500 C 944 944
107 China 27501 T A 944 943 Ser36Ser
108 China 27502 T 944 944
109 China 27503 C 944 944
110 China 27504 T 944 943
111 China 27505 G 944 944
112 China 27506 G 944 944
113 China 27507 A 944 944
114 China 27508 A 944 944
115 China 27509 C T,A 944 942 Thr39Ile-p.Thr39Lys
116 China 27510 A T,G 944 936 Thr39Thr-p.Thr39Thr
117 China 27511 T 944 944
118 China 27512 A 918 918
119 China 27513 C T 918 909 Tyr40Tyr
120 China 27514 G 918 918
121 China 27515 A 918 918
122 China 27516 G A 918 909 Glu41Glu
123 China 27517 G 918 918
124 China 27518 G 918 918
125 China 27519 C 918 918
126 China 27520 A 918 918
127 China 27521 A 918 916
128 China 27522 T C 918 909 Asn43Asn
129 China 27523 T 918 917
130 China 27524 C 918 916
131 China 27525 A 918 917
132 China 27526 C 918 917
133 China 27527 C 918 918
134 China 27528 A T 918 911 Pro45Pro
135 China 27529 T 918 916
136 China 27530 T 918 918
137 China 27531 T C 918 917 Phe46Phe
138 China 27532 C 918 918
139 China 27533 A 918 918
140 China 27534 T C,A 918 916 His47Gln-p.His47His
141 China 27535 C 917 917
142 China 27536 C 917 916
143 China 27537 T 917 916
144 China 27538 C 916 916
145 China 27539 T 916 916
146 China 27540 A T 916 909 Leu49Leu
147 China 27541 G 916 916
148 China 27542 C 916 916
149 China 27543 T 916 916
150 China 27544 G 916 916
151 China 27545 A 916 916
152 China 27546 T C 916 915 Asp51Asp
153 China 27547 A 916 916
154 China 27548 A 916 916
155 China 27549 C T 916 909 Asn52Asn
156 China 27550 A 916 916
157 China 27551 A 916 916
158 China 27552 A 916 916
159 China 27553 T 916 916
160 China 27554 T C 916 915 Phe54Ser
161 China 27555 T 916 916
162 China 27556 G 916 916
163 China 27557 C 916 915
164 China 27558 A 916 915
165 China 27559 C 916 915
166 China 27560 T 916 916
167 China 27561 G T,A 916 908 Leu56Leu-p.Leu56Leu
168 China 27562 A G 916 909 Thr57Ala
169 China 27563 C 916 915
170 China 27564 T 916 915
171 China 27565 T 916 915
172 China 27566 G 916 914
173 China 27567 C 917 916
174 China 27568 T A 917 914 Phe59Ile
175 China 27569 T C 917 910 Phe59Ser
176 China 27570 T A 917 910 Phe59Leu
177 China 27571 A 917 915
178 China 27572 G 917 916
179 China 27573 C 917 916
180 China 27574 A C 917 910 Thr61Pro
181 China 27575 C A 917 909 Thr61Asn
182 China 27576 T A 917 908 Thr61Thr
183 China 27577 C T 917 915 Gln62*
184 China 27578 A 917 915
185 China 27579 A T 917 915 Gln62His
186 China 27580 T 917 916
187 China 27581 T 917 916
188 China 27582 T 917 916
189 China 27583 G 917 916
190 China 27584 C 917 916
191 China 27585 T 917 913
192 China 27586 T 917 916
193 China 27587 T 917 916
194 China 27588 T 917 916
195 China 27589 G 917 916
196 China 27590 C 917 916
197 China 27591 T 917 916
198 China 27592 T 917 916
199 China 27593 G 917 916
200 China 27594 T C 917 910 Cys67Cys
201 China 27595 C G 917 913 Pro68Ala
202 China 27596 C 917 916
203 China 27597 T 917 915
204 China 27598 G 917 916
205 China 27599 A 917 916
206 China 27600 C T 917 915 Asp69Asp
207 China 27601 G 917 916
208 China 27602 G 911 910
209 China 27603 C T 910 903 Gly70Gly
210 China 27604 G A 916 915 Val71Ile
211 China 27605 T 916 916
212 China 27606 A T,G 916 908 Val71Val-p.Val71Val
213 China 27607 A 916 916
214 China 27608 A 916 916
215 China 27609 A 916 916
216 China 27610 C 916 916
217 China 27611 A 916 916
218 China 27612 C T,G 916 909 His73Gln-p.His73His
219 China 27613 G A 916 903 Val74Ile
220 China 27614 T C 916 910 Val74Ala
221 China 27615 C G 916 915 Val74Val
222 China 27616 T 916 916
223 China 27617 A T 916 910 Tyr75Phe
224 China 27618 T C 916 908 Tyr75Tyr
225 China 27619 C 916 916
226 China 27620 A 916 916
227 China 27621 G 916 915
228 China 27622 T C 916 909 Leu77Leu
229 China 27623 T 915 915
230 China 27624 A 915 915
231 China 27625 C 915 915
232 China 27626 G 915 915
233 China 27627 T 915 915
234 China 27628 G 915 915
235 China 27629 C 915 914
236 China 27630 C A,G 915 902 Ala79Ala-p.Ala79Ala
237 China 27631 A C 915 908 Arg80Arg
238 China 27632 G A 915 913 Arg80Lys
239 China 27633 A 915 915
240 China 27634 T G 915 908 Ser81Ala
241 China 27635 C 915 915
242 China 27636 A 915 915
243 China 27637 G 915 915
244 China 27638 T 915 915
245 China 27639 T 915 915
246 China 27640 T 915 915
247 China 27641 C 915 914
248 China 27642 A 915 914
249 China 27643 C 915 915
250 China 27644 C 916 916
251 China 27645 T A,C 916 908 Pro84Pro-p.Pro84Pro
252 China 27646 A 916 916
253 China 27647 A 916 916
254 China 27648 A 916 916
255 China 27649 C 916 916
256 China 27650 T 916 916
257 China 27651 G T 916 910 Leu86Leu
258 China 27652 T 916 916
259 China 27653 T 916 916
260 China 27654 C 916 916
261 China 27655 A 916 916
262 China 27656 T 916 916
263 China 27657 C 916 916
264 China 27658 A 916 916
265 China 27659 G 915 915
266 China 27660 A 915 915
267 China 27661 C 915 915
268 China 27662 A C 915 912 Gln90Pro
269 China 27663 A 915 915
270 China 27664 G 914 914
271 China 27665 A 914 914
272 China 27666 G C 914 913 Glu91Asp
273 China 27667 G 914 914
274 China 27668 A 914 914
275 China 27669 A T 914 913 Glu92Asp
276 China 27670 G A 914 913 Val93Ile
277 China 27671 T A 914 913 Val93Asp
278 China 27672 T 914 914
279 China 27673 C 914 914
280 China 27674 A 914 914
281 China 27675 A 914 914
282 China 27676 G 914 914
283 China 27677 A 914 914
284 China 27678 A 914 914
285 China 27679 C 914 914
286 China 27680 T 914 914
287 China 27681 T 914 914
288 China 27682 T 914 914
289 China 27683 A 914 914
290 China 27684 C 914 913
291 China 27685 T 914 914
292 China 27686 C 914 913
293 China 27687 T A 914 900 Ser98Ser
294 China 27688 C 914 911
295 China 27689 C 914 914
296 China 27690 A T 914 913 Pro99Pro
297 China 27691 A C,T 914 908 Ile100Leu-p.Ile100Phe
298 China 27692 T 914 912
299 China 27693 T C 914 908 Ile100Ile
300 China 27694 T 914 913
301 China 27695 T 914 913
302 China 27696 T 914 913
303 China 27697 C 914 914
304 China 27698 T 914 914
305 China 27699 T C 912 900 Leu102Leu
306 China 27700 A 912 912
307 China 27701 T 912 912
308 China 27702 T A,C 912 898 Ile103Ile-p.Ile103Ile
309 China 27703 G A 912 905 Val104Ile
310 China 27704 T 912 912
311 China 27705 T 912 912
312 China 27706 G 912 912
313 China 27707 C 912 912
314 China 27708 G T,A 912 905 Ala105Ala-p.Ala105Ala
315 China 27709 G 912 912
316 China 27710 C 912 912
317 China 27711 A G,C 911 904 Ala106Ala-p.Ala106Ala
318 China 27712 A T 911 906 Ile107Leu
319 China 27713 T 911 911
320 China 27714 A 911 911
321 China 27715 G 911 911
322 China 27716 T 911 911
323 China 27717 G 911 911
324 China 27718 T 911 910
325 China 27719 T 911 911
326 China 27720 T 911 911
327 China 27721 A 911 911
328 China 27722 T 911 911
329 China 27723 A 911 911
330 China 27724 A 911 911
331 China 27725 C 911 911
332 China 27726 A 911 911
333 China 27727 C 911 910
334 China 27728 T 911 909
335 China 27729 T C 911 905 Leu112Leu
336 China 27730 T 911 911
337 China 27731 G 911 911
338 China 27732 C T 911 909 Cys113Cys
339 China 27733 T 911 910
340 China 27734 T 911 911
341 China 27735 C 911 909
342 China 27736 A 911 911
343 China 27737 C 911 911
344 China 27738 A 911 911
345 China 27739 C 911 911
346 China 27740 T 911 910
347 China 27741 C T 911 900 Leu116Leu
348 China 27742 A 911 909
349 China 27743 A 911 910
350 China 27744 A G 911 899 Lys117Lys
351 China 27745 A C 911 910 Arg118Arg
352 China 27746 G T 911 907 Arg118Ile
353 China 27747 A 911 911
354 China 27748 A 911 911
355 China 27749 A 911 910
356 China 27750 G A 911 909 Lys119Lys
357 China 27751 A 911 911
358 China 27752 C T 911 904 Thr120Ile
359 China 27753 A 911 911
360 China 27754 G T 911 910 Glu121*
361 China 27755 A 911 910
362 China 27756 A 910 910
363 China 27757 T G 910 909 -p.Ter122Glyext*?
364 China 27758 G 909 909
365 China 27759 A 909 909