National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 3                                    
C     18                                      
D     6                                      
E     24                                      
F     30                               1      
G     12   1       1                       1  
H     9                                     1
I     25                                 1 1  
K     21                                      
L     45         2     1   3                  
M     6                                      
N     6                       1              
P     18                   1           1      
Q 2   15             1   1                    
R     15               1 1           1        
S     21         1                     1      
T     30               2       1     1        
V     24               1                   1  
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Chile 27394 A 963 963
1 Chile 27395 T 963 963
2 Chile 27396 G 963 963
3 Chile 27397 A 963 963
4 Chile 27398 A 963 963
5 Chile 27399 A 963 963
6 Chile 27400 A 963 963
7 Chile 27401 T 963 963
8 Chile 27402 T 963 963
9 Chile 27403 A 963 963
10 Chile 27404 T 963 963
11 Chile 27405 T 963 963
12 Chile 27406 C 963 963
13 Chile 27407 T 963 963
14 Chile 27408 T 963 963
15 Chile 27409 T 963 963
16 Chile 27410 T 963 963
17 Chile 27411 C 963 963
18 Chile 27412 T 963 963
19 Chile 27413 T 963 963
20 Chile 27414 G 963 963
21 Chile 27415 G 963 963
22 Chile 27416 C 963 963
23 Chile 27417 A 963 963
24 Chile 27418 C 963 963
25 Chile 27419 T 963 963
26 Chile 27420 G 963 963
27 Chile 27421 A 963 963
28 Chile 27422 T 963 963
29 Chile 27423 A 963 963
30 Chile 27424 A 963 963
31 Chile 27425 C 963 963
32 Chile 27426 A 963 963
33 Chile 27427 C 963 963
34 Chile 27428 T 963 963
35 Chile 27429 C 963 963
36 Chile 27430 G 963 963
37 Chile 27431 C 963 963
38 Chile 27432 T 963 963
39 Chile 27433 A 963 962
40 Chile 27434 C 963 963
41 Chile 27435 T 963 963
42 Chile 27436 T 963 963
43 Chile 27437 G 963 963
44 Chile 27438 T 963 963
45 Chile 27439 G 963 962
46 Chile 27440 A 963 963
47 Chile 27441 G 963 963
48 Chile 27442 C T 963 962 Leu17Phe
49 Chile 27443 T 963 963
50 Chile 27444 T 963 963
51 Chile 27445 T 963 963
52 Chile 27446 A 965 965
53 Chile 27447 T 966 966
54 Chile 27448 C 966 966
55 Chile 27449 A 966 966
56 Chile 27450 C 966 966
57 Chile 27451 T 966 966
58 Chile 27452 A 966 966
59 Chile 27453 C 966 966
60 Chile 27454 C 966 966
61 Chile 27455 A 966 966
62 Chile 27456 A C 966 964 Gln21His
63 Chile 27457 G 966 966
64 Chile 27458 A 966 966
65 Chile 27459 G 966 966
66 Chile 27460 T 966 966
67 Chile 27461 G 966 966
68 Chile 27462 T 966 966
69 Chile 27463 G 966 966
70 Chile 27464 T 966 966
71 Chile 27465 T C 966 965 Val24Val
72 Chile 27466 A 966 966
73 Chile 27467 G 966 966
74 Chile 27468 A 966 966
75 Chile 27469 G 966 966
76 Chile 27470 G 966 966
77 Chile 27471 T 966 966
78 Chile 27472 A 966 966
79 Chile 27473 C 966 966
80 Chile 27474 A 966 966
81 Chile 27475 A 966 966
82 Chile 27476 C G,T 966 960 Thr28Arg-p.Thr28Ile
83 Chile 27477 A 966 964
84 Chile 27478 G 966 966
85 Chile 27479 T 966 966
86 Chile 27480 A 966 966
87 Chile 27481 C 966 966
88 Chile 27482 T 966 966
89 Chile 27483 T 966 966
90 Chile 27484 T 966 966
91 Chile 27485 T 966 966
92 Chile 27486 A 966 966
93 Chile 27487 A 966 966
94 Chile 27488 A 966 966
95 Chile 27489 A 966 966
96 Chile 27490 G 966 966
97 Chile 27491 A 966 966
98 Chile 27492 A 966 966
99 Chile 27493 C T 966 963 Pro34Ser
100 Chile 27494 C T 966 965 Pro34Leu
101 Chile 27495 T 966 966
102 Chile 27496 T 966 966
103 Chile 27497 G 966 966
104 Chile 27498 C 966 966
105 Chile 27499 T 966 966
106 Chile 27500 C 966 966
107 Chile 27501 T 966 966
108 Chile 27502 T 966 966
109 Chile 27503 C T 966 964 Ser37Phe
110 Chile 27504 T 965 965
111 Chile 27505 G 965 965
112 Chile 27506 G T 965 964 Gly38Val
113 Chile 27507 A G 965 962 Gly38Gly
114 Chile 27508 A 965 965
115 Chile 27509 C T 965 926 Thr39Ile
116 Chile 27510 A 965 965
117 Chile 27511 T 965 965
118 Chile 27512 A 965 965
119 Chile 27513 C 965 965
120 Chile 27514 G 965 965
121 Chile 27515 A 965 965
122 Chile 27516 G 965 965
123 Chile 27517 G 965 965
124 Chile 27518 G 965 965
125 Chile 27519 C 965 965
126 Chile 27520 A 965 965
127 Chile 27521 A 965 965
128 Chile 27522 T 965 965
129 Chile 27523 T 965 965
130 Chile 27524 C 965 965
131 Chile 27525 A T 965 964 Ser44Ser
132 Chile 27526 C 965 965
133 Chile 27527 C 965 965
134 Chile 27528 A 965 965
135 Chile 27529 T 965 965
136 Chile 27530 T 965 965
137 Chile 27531 T 965 965
138 Chile 27532 C 965 965
139 Chile 27533 A 965 965
140 Chile 27534 T 963 963
141 Chile 27535 C 963 963
142 Chile 27536 C 963 963
143 Chile 27537 T 963 963
144 Chile 27538 C 963 963
145 Chile 27539 T 963 963
146 Chile 27540 A G 963 962 Leu49Leu
147 Chile 27541 G 963 963
148 Chile 27542 C 963 963
149 Chile 27543 T 963 963
150 Chile 27544 G 963 963
151 Chile 27545 A 963 963
152 Chile 27546 T 963 963
153 Chile 27547 A 963 963
154 Chile 27548 A 963 963
155 Chile 27549 C T 963 962 Asn52Asn
156 Chile 27550 A 963 963
157 Chile 27551 A 963 963
158 Chile 27552 A 963 963
159 Chile 27553 T 963 963
160 Chile 27554 T C 963 962 Phe54Ser
161 Chile 27555 T 963 963
162 Chile 27556 G 963 963
163 Chile 27557 C 963 963
164 Chile 27558 A 963 963
165 Chile 27559 C 963 963
166 Chile 27560 T 963 963
167 Chile 27561 G 963 963
168 Chile 27562 A 963 963
169 Chile 27563 C A 963 962 Thr57Asn
170 Chile 27564 T 963 963
171 Chile 27565 T 963 963
172 Chile 27566 G 963 963
173 Chile 27567 C 963 963
174 Chile 27568 T 963 963
175 Chile 27569 T 963 963
176 Chile 27570 T 963 963
177 Chile 27571 A 963 963
178 Chile 27572 G 963 963
179 Chile 27573 C 963 963
180 Chile 27574 A 963 963
181 Chile 27575 C 963 963
182 Chile 27576 T 963 963
183 Chile 27577 C T 963 962 Gln62*
184 Chile 27578 A 963 963
185 Chile 27579 A 963 963
186 Chile 27580 T 963 963
187 Chile 27581 T 963 963
188 Chile 27582 T 963 963
189 Chile 27583 G 963 963
190 Chile 27584 C 963 963
191 Chile 27585 T 963 963
192 Chile 27586 T 963 963
193 Chile 27587 T 963 963
194 Chile 27588 T 963 963
195 Chile 27589 G 963 963
196 Chile 27590 C 963 963
197 Chile 27591 T 963 963
198 Chile 27592 T 963 963
199 Chile 27593 G 963 963
200 Chile 27594 T 963 963
201 Chile 27595 C 963 963
202 Chile 27596 C 963 963
203 Chile 27597 T 963 963
204 Chile 27598 G 963 963
205 Chile 27599 A 963 963
206 Chile 27600 C 963 963
207 Chile 27601 G T 963 960 Gly70Cys
208 Chile 27602 G 963 962
209 Chile 27603 C 963 962
210 Chile 27604 G A 963 962 Val71Ile
211 Chile 27605 T 963 963
212 Chile 27606 A 963 963
213 Chile 27607 A 963 963
214 Chile 27608 A 963 963
215 Chile 27609 A 963 963
216 Chile 27610 C T 963 961 His73Tyr
217 Chile 27611 A 963 963
218 Chile 27612 C 963 963
219 Chile 27613 G 963 963
220 Chile 27614 T 963 963
221 Chile 27615 C 963 963
222 Chile 27616 T 963 963
223 Chile 27617 A 963 963
224 Chile 27618 T 963 963
225 Chile 27619 C 963 963
226 Chile 27620 A 963 963
227 Chile 27621 G 963 963
228 Chile 27622 T 963 963
229 Chile 27623 T 963 963
230 Chile 27624 A 963 963
231 Chile 27625 C 963 963
232 Chile 27626 G 963 963
233 Chile 27627 T 963 963
234 Chile 27628 G 963 963
235 Chile 27629 C 963 963
236 Chile 27630 C A,T 963 953 Ala79Ala-p.Ala79Ala
237 Chile 27631 A 963 963
238 Chile 27632 G T 963 961 Arg80Ile
239 Chile 27633 A G 963 962 Arg80Arg
240 Chile 27634 T 961 961
241 Chile 27635 C 961 961
242 Chile 27636 A 961 961
243 Chile 27637 G 961 961
244 Chile 27638 T 961 961
245 Chile 27639 T 961 961
246 Chile 27640 T 961 961
247 Chile 27641 C 961 961
248 Chile 27642 A 961 961
249 Chile 27643 C 961 961
250 Chile 27644 C 961 961
251 Chile 27645 T 961 961
252 Chile 27646 A 961 961
253 Chile 27647 A 961 961
254 Chile 27648 A 961 961
255 Chile 27649 C 961 961
256 Chile 27650 T 961 961
257 Chile 27651 G T 961 960 Leu86Leu
258 Chile 27652 T 961 961
259 Chile 27653 T 961 961
260 Chile 27654 C 961 961
261 Chile 27655 A G 961 960 Ile88Val
262 Chile 27656 T C 961 960 Ile88Thr
263 Chile 27657 C 961 961
264 Chile 27658 A 961 961
265 Chile 27659 G A 961 960 Arg89Lys
266 Chile 27660 A 961 961
267 Chile 27661 C 961 961
268 Chile 27662 A 961 961
269 Chile 27663 A 961 961
270 Chile 27664 G 961 961
271 Chile 27665 A 961 961
272 Chile 27666 G 961 961
273 Chile 27667 G 961 961
274 Chile 27668 A 961 961
275 Chile 27669 A 961 961
276 Chile 27670 G 961 961
277 Chile 27671 T 961 961
278 Chile 27672 T 961 961
279 Chile 27673 C T,A 961 959 Gln94*-p.Gln94Lys
280 Chile 27674 A 961 961
281 Chile 27675 A 961 961
282 Chile 27676 G 961 961
283 Chile 27677 A 961 961
284 Chile 27678 A 961 961
285 Chile 27679 C T 961 960 Leu96Phe
286 Chile 27680 T 961 961
287 Chile 27681 T 961 961
288 Chile 27682 T 961 961
289 Chile 27683 A 961 961
290 Chile 27684 C 961 961
291 Chile 27685 T 961 961
292 Chile 27686 C 961 961
293 Chile 27687 T 961 961
294 Chile 27688 C 961 961
295 Chile 27689 C 961 961
296 Chile 27690 A 961 961
297 Chile 27691 A 961 961
298 Chile 27692 T 961 961
299 Chile 27693 T 961 961
300 Chile 27694 T 961 961
301 Chile 27695 T 961 961
302 Chile 27696 T 961 961
303 Chile 27697 C 961 961
304 Chile 27698 T 961 961
305 Chile 27699 T 961 961
306 Chile 27700 A 961 961
307 Chile 27701 T 961 961
308 Chile 27702 T 961 961
309 Chile 27703 G 961 961
310 Chile 27704 T 961 961
311 Chile 27705 T 961 961
312 Chile 27706 G 961 961
313 Chile 27707 C 961 961
314 Chile 27708 G T 961 960 Ala105Ala
315 Chile 27709 G 961 961
316 Chile 27710 C 961 961
317 Chile 27711 A 961 961
318 Chile 27712 A 961 961
319 Chile 27713 T 961 961
320 Chile 27714 A 961 961
321 Chile 27715 G 961 961
322 Chile 27716 T 961 961
323 Chile 27717 G 961 961
324 Chile 27718 T 961 961
325 Chile 27719 T 961 961
326 Chile 27720 T 961 961
327 Chile 27721 A 961 961
328 Chile 27722 T 961 961
329 Chile 27723 A 961 961
330 Chile 27724 A 961 961
331 Chile 27725 C 961 961
332 Chile 27726 A 961 961
333 Chile 27727 C A 961 960 Leu112Ile
334 Chile 27728 T 961 961
335 Chile 27729 T 961 961
336 Chile 27730 T 961 961
337 Chile 27731 G 961 961
338 Chile 27732 C 961 961
339 Chile 27733 T 961 961
340 Chile 27734 T 961 961
341 Chile 27735 C 961 961
342 Chile 27736 A 961 961
343 Chile 27737 C 961 961
344 Chile 27738 A 961 961
345 Chile 27739 C 961 961
346 Chile 27740 T 961 961
347 Chile 27741 C T 961 957 Leu116Leu
348 Chile 27742 A 961 961
349 Chile 27743 A 961 961
350 Chile 27744 A 961 961
351 Chile 27745 A 961 961
352 Chile 27746 G 961 961
353 Chile 27747 A 961 961
354 Chile 27748 A 961 961
355 Chile 27749 A 961 961
356 Chile 27750 G 961 960
357 Chile 27751 A 961 961
358 Chile 27752 C 961 961
359 Chile 27753 A 961 961
360 Chile 27754 G 961 961
361 Chile 27755 A 961 961
362 Chile 27756 A 961 961
363 Chile 27757 T 961 961
364 Chile 27758 G 961 961
365 Chile 27759 A 961 961