National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30               2                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Cameroon 27394 A 20 20
1 Cameroon 27395 T 20 20
2 Cameroon 27396 G 20 20
3 Cameroon 27397 A 20 20
4 Cameroon 27398 A 20 20
5 Cameroon 27399 A 20 20
6 Cameroon 27400 A 20 20
7 Cameroon 27401 T 20 20
8 Cameroon 27402 T 20 20
9 Cameroon 27403 A 20 20
10 Cameroon 27404 T 20 20
11 Cameroon 27405 T 20 20
12 Cameroon 27406 C 20 20
13 Cameroon 27407 T 20 20
14 Cameroon 27408 T 20 20
15 Cameroon 27409 T 20 20
16 Cameroon 27410 T 21 21
17 Cameroon 27411 C 21 21
18 Cameroon 27412 T 21 21
19 Cameroon 27413 T 21 21
20 Cameroon 27414 G 21 21
21 Cameroon 27415 G 21 21
22 Cameroon 27416 C 21 21
23 Cameroon 27417 A 21 21
24 Cameroon 27418 C 21 21
25 Cameroon 27419 T 21 21
26 Cameroon 27420 G 21 21
27 Cameroon 27421 A 21 21
28 Cameroon 27422 T 21 21
29 Cameroon 27423 A 21 21
30 Cameroon 27424 A 21 21
31 Cameroon 27425 C 21 21
32 Cameroon 27426 A 21 21
33 Cameroon 27427 C 21 21
34 Cameroon 27428 T 21 21
35 Cameroon 27429 C 21 21
36 Cameroon 27430 G 21 21
37 Cameroon 27431 C 21 21
38 Cameroon 27432 T 21 21
39 Cameroon 27433 A 21 21
40 Cameroon 27434 C T 21 20 Thr14Ile
41 Cameroon 27435 T 21 21
42 Cameroon 27436 T 21 21
43 Cameroon 27437 G 21 21
44 Cameroon 27438 T 21 21
45 Cameroon 27439 G 21 21
46 Cameroon 27440 A 21 21
47 Cameroon 27441 G 21 21
48 Cameroon 27442 C 21 21
49 Cameroon 27443 T 21 21
50 Cameroon 27444 T 21 21
51 Cameroon 27445 T 21 21
52 Cameroon 27446 A 21 21
53 Cameroon 27447 T 21 21
54 Cameroon 27448 C 21 21
55 Cameroon 27449 A 21 21
56 Cameroon 27450 C 21 21
57 Cameroon 27451 T 21 21
58 Cameroon 27452 A 21 21
59 Cameroon 27453 C 21 21
60 Cameroon 27454 C 21 21
61 Cameroon 27455 A 21 21
62 Cameroon 27456 A 21 21
63 Cameroon 27457 G 21 21
64 Cameroon 27458 A 21 21
65 Cameroon 27459 G 22 22
66 Cameroon 27460 T 22 21
67 Cameroon 27461 G 22 21
68 Cameroon 27462 T 22 21
69 Cameroon 27463 G 22 21
70 Cameroon 27464 T 22 21
71 Cameroon 27465 T 22 21
72 Cameroon 27466 A 22 21
73 Cameroon 27467 G 22 21
74 Cameroon 27468 A 22 21
75 Cameroon 27469 G 22 21
76 Cameroon 27470 G 22 21
77 Cameroon 27471 T 22 21
78 Cameroon 27472 A 22 21
79 Cameroon 27473 C 22 21
80 Cameroon 27474 A 22 21
81 Cameroon 27475 A 22 21
82 Cameroon 27476 C T 22 19 Thr28Ile
83 Cameroon 27477 A 22 21
84 Cameroon 27478 G 22 21
85 Cameroon 27479 T 22 21
86 Cameroon 27480 A 22 21
87 Cameroon 27481 C 22 21
88 Cameroon 27482 T 22 21
89 Cameroon 27483 T 22 21
90 Cameroon 27484 T 22 21
91 Cameroon 27485 T 22 21
92 Cameroon 27486 A 22 21
93 Cameroon 27487 A 22 21
94 Cameroon 27488 A 22 21
95 Cameroon 27489 A 22 21
96 Cameroon 27490 G 22 21
97 Cameroon 27491 A 22 21
98 Cameroon 27492 A 22 21
99 Cameroon 27493 C 22 21
100 Cameroon 27494 C 22 21
101 Cameroon 27495 T 22 21
102 Cameroon 27496 T 22 21
103 Cameroon 27497 G 22 21
104 Cameroon 27498 C 22 21
105 Cameroon 27499 T 22 21
106 Cameroon 27500 C 22 21
107 Cameroon 27501 T 22 21
108 Cameroon 27502 T 22 21
109 Cameroon 27503 C 22 21
110 Cameroon 27504 T 22 21
111 Cameroon 27505 G 22 21
112 Cameroon 27506 G 22 22
113 Cameroon 27507 A 22 22
114 Cameroon 27508 A 22 22
115 Cameroon 27509 C 22 22
116 Cameroon 27510 A 22 22
117 Cameroon 27511 T 22 22
118 Cameroon 27512 A 22 22
119 Cameroon 27513 C 22 22
120 Cameroon 27514 G 22 22
121 Cameroon 27515 A 22 22
122 Cameroon 27516 G 22 22
123 Cameroon 27517 G 22 22
124 Cameroon 27518 G 22 22
125 Cameroon 27519 C 22 22
126 Cameroon 27520 A 22 22
127 Cameroon 27521 A 22 22
128 Cameroon 27522 T 22 22
129 Cameroon 27523 T 22 22
130 Cameroon 27524 C 22 22
131 Cameroon 27525 A 22 22
132 Cameroon 27526 C 22 22
133 Cameroon 27527 C 22 22
134 Cameroon 27528 A 21 21
135 Cameroon 27529 T 21 21
136 Cameroon 27530 T 21 21
137 Cameroon 27531 T 21 21
138 Cameroon 27532 C 21 21
139 Cameroon 27533 A 21 21
140 Cameroon 27534 T 21 21
141 Cameroon 27535 C 21 21
142 Cameroon 27536 C 21 21
143 Cameroon 27537 T 21 21
144 Cameroon 27538 C 21 21
145 Cameroon 27539 T 21 21
146 Cameroon 27540 A 21 21
147 Cameroon 27541 G 21 21
148 Cameroon 27542 C 21 21
149 Cameroon 27543 T 21 21
150 Cameroon 27544 G 21 21
151 Cameroon 27545 A 21 21
152 Cameroon 27546 T 21 21
153 Cameroon 27547 A 21 21
154 Cameroon 27548 A 21 21
155 Cameroon 27549 C 21 21
156 Cameroon 27550 A 21 21
157 Cameroon 27551 A 21 21
158 Cameroon 27552 A 21 21
159 Cameroon 27553 T 21 21
160 Cameroon 27554 T 21 21
161 Cameroon 27555 T 21 21
162 Cameroon 27556 G 21 21
163 Cameroon 27557 C 21 21
164 Cameroon 27558 A 21 21
165 Cameroon 27559 C 21 21
166 Cameroon 27560 T 21 21
167 Cameroon 27561 G 21 21
168 Cameroon 27562 A 21 21
169 Cameroon 27563 C 21 21
170 Cameroon 27564 T 21 21
171 Cameroon 27565 T 21 21
172 Cameroon 27566 G 21 21
173 Cameroon 27567 C 21 21
174 Cameroon 27568 T 21 21
175 Cameroon 27569 T 21 21
176 Cameroon 27570 T 21 21
177 Cameroon 27571 A 21 21
178 Cameroon 27572 G 21 21
179 Cameroon 27573 C 21 21
180 Cameroon 27574 A 21 21
181 Cameroon 27575 C 21 21
182 Cameroon 27576 T 21 21
183 Cameroon 27577 C 21 21
184 Cameroon 27578 A 21 21
185 Cameroon 27579 A 21 21
186 Cameroon 27580 T 21 21
187 Cameroon 27581 T 21 21
188 Cameroon 27582 T 21 21
189 Cameroon 27583 G 21 21
190 Cameroon 27584 C 21 21
191 Cameroon 27585 T 21 21
192 Cameroon 27586 T 21 21
193 Cameroon 27587 T 21 21
194 Cameroon 27588 T 21 21
195 Cameroon 27589 G 21 21
196 Cameroon 27590 C 21 21
197 Cameroon 27591 T 21 21
198 Cameroon 27592 T 21 21
199 Cameroon 27593 G 21 21
200 Cameroon 27594 T 21 21
201 Cameroon 27595 C 21 21
202 Cameroon 27596 C 21 21
203 Cameroon 27597 T 21 21
204 Cameroon 27598 G 21 21
205 Cameroon 27599 A 21 21
206 Cameroon 27600 C 21 21
207 Cameroon 27601 G 21 21
208 Cameroon 27602 G 21 21
209 Cameroon 27603 C 21 21
210 Cameroon 27604 G 21 21
211 Cameroon 27605 T 21 21
212 Cameroon 27606 A 21 21
213 Cameroon 27607 A 21 21
214 Cameroon 27608 A 21 21
215 Cameroon 27609 A 21 21
216 Cameroon 27610 C 21 21
217 Cameroon 27611 A 21 21
218 Cameroon 27612 C 21 21
219 Cameroon 27613 G 21 21
220 Cameroon 27614 T 21 21
221 Cameroon 27615 C 21 21
222 Cameroon 27616 T 21 21
223 Cameroon 27617 A 21 21
224 Cameroon 27618 T 21 21
225 Cameroon 27619 C 21 21
226 Cameroon 27620 A 21 21
227 Cameroon 27621 G 21 21
228 Cameroon 27622 T 21 21
229 Cameroon 27623 T 21 21
230 Cameroon 27624 A 21 21
231 Cameroon 27625 C 21 21
232 Cameroon 27626 G 21 21
233 Cameroon 27627 T 21 21
234 Cameroon 27628 G 21 21
235 Cameroon 27629 C 21 21
236 Cameroon 27630 C 21 21
237 Cameroon 27631 A 21 21
238 Cameroon 27632 G 21 21
239 Cameroon 27633 A 21 21
240 Cameroon 27634 T 21 21
241 Cameroon 27635 C 21 21
242 Cameroon 27636 A 21 21
243 Cameroon 27637 G 21 21
244 Cameroon 27638 T 21 21
245 Cameroon 27639 T 21 21
246 Cameroon 27640 T 21 21
247 Cameroon 27641 C 21 21
248 Cameroon 27642 A 21 21
249 Cameroon 27643 C 21 21
250 Cameroon 27644 C 21 21
251 Cameroon 27645 T 21 21
252 Cameroon 27646 A 21 21
253 Cameroon 27647 A 21 21
254 Cameroon 27648 A 21 21
255 Cameroon 27649 C 21 21
256 Cameroon 27650 T 21 21
257 Cameroon 27651 G 21 21
258 Cameroon 27652 T 21 21
259 Cameroon 27653 T 21 21
260 Cameroon 27654 C 21 21
261 Cameroon 27655 A 21 21
262 Cameroon 27656 T 21 21
263 Cameroon 27657 C 21 21
264 Cameroon 27658 A 21 21
265 Cameroon 27659 G 21 21
266 Cameroon 27660 A 21 21
267 Cameroon 27661 C 21 21
268 Cameroon 27662 A 21 21
269 Cameroon 27663 A 21 21
270 Cameroon 27664 G 21 21
271 Cameroon 27665 A 21 21
272 Cameroon 27666 G 21 21
273 Cameroon 27667 G 21 21
274 Cameroon 27668 A 21 21
275 Cameroon 27669 A 21 21
276 Cameroon 27670 G 21 21
277 Cameroon 27671 T 21 21
278 Cameroon 27672 T 21 21
279 Cameroon 27673 C 21 21
280 Cameroon 27674 A 21 21
281 Cameroon 27675 A 21 21
282 Cameroon 27676 G 21 21
283 Cameroon 27677 A 21 21
284 Cameroon 27678 A 21 21
285 Cameroon 27679 C 21 21
286 Cameroon 27680 T 21 21
287 Cameroon 27681 T 21 21
288 Cameroon 27682 T 21 21
289 Cameroon 27683 A 21 21
290 Cameroon 27684 C 21 21
291 Cameroon 27685 T 21 21
292 Cameroon 27686 C 21 21
293 Cameroon 27687 T 21 21
294 Cameroon 27688 C 21 21
295 Cameroon 27689 C 21 21
296 Cameroon 27690 A 21 21
297 Cameroon 27691 A 21 21
298 Cameroon 27692 T 21 21
299 Cameroon 27693 T 21 21
300 Cameroon 27694 T 21 21
301 Cameroon 27695 T 21 21
302 Cameroon 27696 T 21 21
303 Cameroon 27697 C 21 21
304 Cameroon 27698 T 21 21
305 Cameroon 27699 T 21 21
306 Cameroon 27700 A 21 21
307 Cameroon 27701 T 21 21
308 Cameroon 27702 T 21 21
309 Cameroon 27703 G 21 21
310 Cameroon 27704 T 21 21
311 Cameroon 27705 T 21 21
312 Cameroon 27706 G 21 21
313 Cameroon 27707 C 21 21
314 Cameroon 27708 G 21 21
315 Cameroon 27709 G 21 21
316 Cameroon 27710 C 21 21
317 Cameroon 27711 A 21 21
318 Cameroon 27712 A 21 21
319 Cameroon 27713 T 21 21
320 Cameroon 27714 A 21 21
321 Cameroon 27715 G 21 21
322 Cameroon 27716 T 21 21
323 Cameroon 27717 G 21 21
324 Cameroon 27718 T 21 21
325 Cameroon 27719 T 20 20
326 Cameroon 27720 T 20 20
327 Cameroon 27721 A 20 20
328 Cameroon 27722 T 20 20
329 Cameroon 27723 A 20 20
330 Cameroon 27724 A 20 20
331 Cameroon 27725 C 20 20
332 Cameroon 27726 A 20 20
333 Cameroon 27727 C 20 20
334 Cameroon 27728 T 20 20
335 Cameroon 27729 T 20 20
336 Cameroon 27730 T 20 20
337 Cameroon 27731 G 20 20
338 Cameroon 27732 C 20 20
339 Cameroon 27733 T 20 20
340 Cameroon 27734 T 20 20
341 Cameroon 27735 C 20 20
342 Cameroon 27736 A 20 20
343 Cameroon 27737 C 20 20
344 Cameroon 27738 A 20 20
345 Cameroon 27739 C 20 20
346 Cameroon 27740 T 20 20
347 Cameroon 27741 C 20 20
348 Cameroon 27742 A 20 20
349 Cameroon 27743 A 20 20
350 Cameroon 27744 A 20 20
351 Cameroon 27745 A 20 20
352 Cameroon 27746 G 20 20
353 Cameroon 27747 A 20 20
354 Cameroon 27748 A 20 20
355 Cameroon 27749 A 20 20
356 Cameroon 27750 G 20 20
357 Cameroon 27751 A 20 20
358 Cameroon 27752 C 20 20
359 Cameroon 27753 A 20 20
360 Cameroon 27754 G 20 20
361 Cameroon 27755 A 20 20
362 Cameroon 27756 A 20 20
363 Cameroon 27757 T 20 20
364 Cameroon 27758 G 20 20
365 Cameroon 27759 A 20 20