National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                   2  
C     18                                      
D     6                                      
E     24       1                              
F     30                                      
G     12                                      
H     9                                      
I     25               1                      
K     21                                      
L     45         1         1                  
M     6                                      
N     6                       1              
P     18                                      
Q     15                                      
R     15                                      
S     21                               2      
T     30                       1         1    
V     24               1                      
Y     15         1                           1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Cambodia 27394 A 4 4
1 Cambodia 27395 T 4 4
2 Cambodia 27396 G 4 4
3 Cambodia 27397 A 4 4
4 Cambodia 27398 A 4 4
5 Cambodia 27399 A 4 4
6 Cambodia 27400 A 4 4
7 Cambodia 27401 T 4 4
8 Cambodia 27402 T 4 4
9 Cambodia 27403 A 4 4
10 Cambodia 27404 T 4 4
11 Cambodia 27405 T 4 4
12 Cambodia 27406 C 4 4
13 Cambodia 27407 T 4 4
14 Cambodia 27408 T 4 4
15 Cambodia 27409 T 4 4
16 Cambodia 27410 T 4 4
17 Cambodia 27411 C 4 4
18 Cambodia 27412 T 4 4
19 Cambodia 27413 T 4 4
20 Cambodia 27414 G 4 4
21 Cambodia 27415 G 4 4
22 Cambodia 27416 C 4 4
23 Cambodia 27417 A 4 4
24 Cambodia 27418 C 4 4
25 Cambodia 27419 T 4 4
26 Cambodia 27420 G 4 4
27 Cambodia 27421 A 4 4
28 Cambodia 27422 T 4 4
29 Cambodia 27423 A 4 4
30 Cambodia 27424 A 4 4
31 Cambodia 27425 C 4 4
32 Cambodia 27426 A 4 4
33 Cambodia 27427 C 4 4
34 Cambodia 27428 T 4 4
35 Cambodia 27429 C T 4 2 Leu12Leu
36 Cambodia 27430 G 4 4
37 Cambodia 27431 C T 4 2 Ala13Val
38 Cambodia 27432 T 4 4
39 Cambodia 27433 A 4 4
40 Cambodia 27434 C A 4 2 Thr14Asn
41 Cambodia 27435 T 4 4
42 Cambodia 27436 T 4 4
43 Cambodia 27437 G 4 4
44 Cambodia 27438 T 4 4
45 Cambodia 27439 G 4 4
46 Cambodia 27440 A 4 4
47 Cambodia 27441 G 4 4
48 Cambodia 27442 C 4 4
49 Cambodia 27443 T 4 4
50 Cambodia 27444 T 4 4
51 Cambodia 27445 T 4 4
52 Cambodia 27446 A 4 4
53 Cambodia 27447 T 4 4
54 Cambodia 27448 C 4 4
55 Cambodia 27449 A 4 4
56 Cambodia 27450 C 4 4
57 Cambodia 27451 T 4 4
58 Cambodia 27452 A 4 4
59 Cambodia 27453 C 4 4
60 Cambodia 27454 C 4 4
61 Cambodia 27455 A 4 4
62 Cambodia 27456 A 4 4
63 Cambodia 27457 G 4 4
64 Cambodia 27458 A 4 4
65 Cambodia 27459 G 4 4
66 Cambodia 27460 T 4 4
67 Cambodia 27461 G 4 4
68 Cambodia 27462 T 4 4
69 Cambodia 27463 G 4 4
70 Cambodia 27464 T 4 4
71 Cambodia 27465 T 4 4
72 Cambodia 27466 A 4 4
73 Cambodia 27467 G 4 4
74 Cambodia 27468 A 4 4
75 Cambodia 27469 G 4 4
76 Cambodia 27470 G 4 4
77 Cambodia 27471 T 4 4
78 Cambodia 27472 A 4 4
79 Cambodia 27473 C 4 4
80 Cambodia 27474 A 4 4
81 Cambodia 27475 A 4 4
82 Cambodia 27476 C 4 4
83 Cambodia 27477 A 4 4
84 Cambodia 27478 G 4 4
85 Cambodia 27479 T 4 4
86 Cambodia 27480 A 4 4
87 Cambodia 27481 C 4 4
88 Cambodia 27482 T 4 4
89 Cambodia 27483 T 4 4
90 Cambodia 27484 T 4 4
91 Cambodia 27485 T 4 4
92 Cambodia 27486 A 4 4
93 Cambodia 27487 A 4 4
94 Cambodia 27488 A 4 4
95 Cambodia 27489 A 4 4
96 Cambodia 27490 G 4 4
97 Cambodia 27491 A 4 4
98 Cambodia 27492 A 4 4
99 Cambodia 27493 C 4 4
100 Cambodia 27494 C 4 4
101 Cambodia 27495 T 4 4
102 Cambodia 27496 T 4 4
103 Cambodia 27497 G 4 4
104 Cambodia 27498 C 4 4
105 Cambodia 27499 T 4 4
106 Cambodia 27500 C 4 4
107 Cambodia 27501 T 4 4
108 Cambodia 27502 T 4 4
109 Cambodia 27503 C 4 4
110 Cambodia 27504 T C 4 2 Ser37Ser
111 Cambodia 27505 G 4 4
112 Cambodia 27506 G 4 4
113 Cambodia 27507 A 4 4
114 Cambodia 27508 A 4 4
115 Cambodia 27509 C 4 4
116 Cambodia 27510 A T 4 2 Thr39Thr
117 Cambodia 27511 T 4 4
118 Cambodia 27512 A 4 4
119 Cambodia 27513 C T 4 2 Tyr40Tyr
120 Cambodia 27514 G 4 4
121 Cambodia 27515 A 4 4
122 Cambodia 27516 G A 4 2 Glu41Glu
123 Cambodia 27517 G 4 4
124 Cambodia 27518 G 4 4
125 Cambodia 27519 C 4 4
126 Cambodia 27520 A 4 4
127 Cambodia 27521 A 4 4
128 Cambodia 27522 T 4 4
129 Cambodia 27523 T 4 4
130 Cambodia 27524 C 4 4
131 Cambodia 27525 A 4 4
132 Cambodia 27526 C 4 4
133 Cambodia 27527 C 4 4
134 Cambodia 27528 A 4 4
135 Cambodia 27529 T 4 4
136 Cambodia 27530 T 4 4
137 Cambodia 27531 T 4 4
138 Cambodia 27532 C 4 4
139 Cambodia 27533 A 4 4
140 Cambodia 27534 T 4 4
141 Cambodia 27535 C 4 4
142 Cambodia 27536 C 4 4
143 Cambodia 27537 T 4 4
144 Cambodia 27538 C 4 4
145 Cambodia 27539 T 4 4
146 Cambodia 27540 A 4 4
147 Cambodia 27541 G 4 4
148 Cambodia 27542 C 4 4
149 Cambodia 27543 T 4 4
150 Cambodia 27544 G 4 4
151 Cambodia 27545 A 4 4
152 Cambodia 27546 T 4 4
153 Cambodia 27547 A 4 4
154 Cambodia 27548 A 4 4
155 Cambodia 27549 C T 4 2 Asn52Asn
156 Cambodia 27550 A 4 4
157 Cambodia 27551 A 4 4
158 Cambodia 27552 A 4 4
159 Cambodia 27553 T 4 4
160 Cambodia 27554 T 4 4
161 Cambodia 27555 T 4 4
162 Cambodia 27556 G 4 4
163 Cambodia 27557 C 4 4
164 Cambodia 27558 A 4 4
165 Cambodia 27559 C 4 4
166 Cambodia 27560 T 4 4
167 Cambodia 27561 G 4 4
168 Cambodia 27562 A 4 4
169 Cambodia 27563 C 4 4
170 Cambodia 27564 T 4 4
171 Cambodia 27565 T 4 4
172 Cambodia 27566 G 4 4
173 Cambodia 27567 C 4 4
174 Cambodia 27568 T 4 4
175 Cambodia 27569 T 4 4
176 Cambodia 27570 T 4 4
177 Cambodia 27571 A 4 4
178 Cambodia 27572 G 4 4
179 Cambodia 27573 C 4 4
180 Cambodia 27574 A 4 4
181 Cambodia 27575 C 4 4
182 Cambodia 27576 T 4 4
183 Cambodia 27577 C 4 4
184 Cambodia 27578 A 4 4
185 Cambodia 27579 A 4 4
186 Cambodia 27580 T 4 4
187 Cambodia 27581 T 4 4
188 Cambodia 27582 T 4 4
189 Cambodia 27583 G 4 4
190 Cambodia 27584 C 4 4
191 Cambodia 27585 T 4 4
192 Cambodia 27586 T 4 4
193 Cambodia 27587 T 4 4
194 Cambodia 27588 T 4 4
195 Cambodia 27589 G 4 4
196 Cambodia 27590 C 4 4
197 Cambodia 27591 T 4 4
198 Cambodia 27592 T 4 4
199 Cambodia 27593 G 4 4
200 Cambodia 27594 T 4 4
201 Cambodia 27595 C 4 4
202 Cambodia 27596 C 4 4
203 Cambodia 27597 T 4 4
204 Cambodia 27598 G 4 4
205 Cambodia 27599 A 4 4
206 Cambodia 27600 C 4 4
207 Cambodia 27601 G 4 4
208 Cambodia 27602 G 4 4
209 Cambodia 27603 C 4 4
210 Cambodia 27604 G 4 4
211 Cambodia 27605 T 4 4
212 Cambodia 27606 A 4 4
213 Cambodia 27607 A 4 4
214 Cambodia 27608 A 4 4
215 Cambodia 27609 A 4 4
216 Cambodia 27610 C 4 4
217 Cambodia 27611 A 4 4
218 Cambodia 27612 C 4 4
219 Cambodia 27613 G 4 4
220 Cambodia 27614 T 4 4
221 Cambodia 27615 C 4 4
222 Cambodia 27616 T 4 4
223 Cambodia 27617 A T 4 2 Tyr75Phe
224 Cambodia 27618 T 4 4
225 Cambodia 27619 C 4 4
226 Cambodia 27620 A 4 4
227 Cambodia 27621 G 4 4
228 Cambodia 27622 T 4 4
229 Cambodia 27623 T 4 4
230 Cambodia 27624 A 4 4
231 Cambodia 27625 C 4 4
232 Cambodia 27626 G 4 4
233 Cambodia 27627 T 4 4
234 Cambodia 27628 G 4 4
235 Cambodia 27629 C 4 4
236 Cambodia 27630 C 4 4
237 Cambodia 27631 A 4 4
238 Cambodia 27632 G 4 4
239 Cambodia 27633 A 4 4
240 Cambodia 27634 T 4 4
241 Cambodia 27635 C 4 4
242 Cambodia 27636 A 4 4
243 Cambodia 27637 G 4 4
244 Cambodia 27638 T 4 4
245 Cambodia 27639 T 4 4
246 Cambodia 27640 T 4 4
247 Cambodia 27641 C 4 4
248 Cambodia 27642 A 4 4
249 Cambodia 27643 C 4 4
250 Cambodia 27644 C 4 4
251 Cambodia 27645 T 4 4
252 Cambodia 27646 A 4 4
253 Cambodia 27647 A 4 4
254 Cambodia 27648 A 4 4
255 Cambodia 27649 C 4 4
256 Cambodia 27650 T 4 4
257 Cambodia 27651 G 4 4
258 Cambodia 27652 T 4 4
259 Cambodia 27653 T 4 4
260 Cambodia 27654 C 4 4
261 Cambodia 27655 A 4 4
262 Cambodia 27656 T 4 4
263 Cambodia 27657 C 4 4
264 Cambodia 27658 A 4 4
265 Cambodia 27659 G 4 4
266 Cambodia 27660 A 4 4
267 Cambodia 27661 C 4 4
268 Cambodia 27662 A 4 4
269 Cambodia 27663 A 4 4
270 Cambodia 27664 G 4 4
271 Cambodia 27665 A 4 4
272 Cambodia 27666 G 4 4
273 Cambodia 27667 G 4 4
274 Cambodia 27668 A 4 4
275 Cambodia 27669 A 4 4
276 Cambodia 27670 G 4 4
277 Cambodia 27671 T 4 4
278 Cambodia 27672 T 4 4
279 Cambodia 27673 C 4 4
280 Cambodia 27674 A 4 4
281 Cambodia 27675 A 4 4
282 Cambodia 27676 G 4 4
283 Cambodia 27677 A 4 4
284 Cambodia 27678 A 4 4
285 Cambodia 27679 C T 4 2 Leu96Phe
286 Cambodia 27680 T 4 4
287 Cambodia 27681 T 4 4
288 Cambodia 27682 T 4 4
289 Cambodia 27683 A 4 4
290 Cambodia 27684 C 4 4
291 Cambodia 27685 T 4 4
292 Cambodia 27686 C 4 4
293 Cambodia 27687 T A 4 2 Ser98Ser
294 Cambodia 27688 C 4 4
295 Cambodia 27689 C 4 4
296 Cambodia 27690 A 4 4
297 Cambodia 27691 A 4 4
298 Cambodia 27692 T 4 4
299 Cambodia 27693 T 4 4
300 Cambodia 27694 T 4 4
301 Cambodia 27695 T 4 4
302 Cambodia 27696 T 4 4
303 Cambodia 27697 C 4 4
304 Cambodia 27698 T 4 4
305 Cambodia 27699 T 4 4
306 Cambodia 27700 A 4 4
307 Cambodia 27701 T 4 4
308 Cambodia 27702 T C 4 2 Ile103Ile
309 Cambodia 27703 G A 4 2 Val104Ile
310 Cambodia 27704 T 4 4
311 Cambodia 27705 T 4 4
312 Cambodia 27706 G 4 4
313 Cambodia 27707 C T 4 2 Ala105Val
314 Cambodia 27708 G 4 4
315 Cambodia 27709 G 4 4
316 Cambodia 27710 C 4 4
317 Cambodia 27711 A 4 4
318 Cambodia 27712 A 4 4
319 Cambodia 27713 T 4 4
320 Cambodia 27714 A 4 4
321 Cambodia 27715 G 4 4
322 Cambodia 27716 T 4 4
323 Cambodia 27717 G 4 4
324 Cambodia 27718 T 4 4
325 Cambodia 27719 T 4 4
326 Cambodia 27720 T 4 4
327 Cambodia 27721 A 4 4
328 Cambodia 27722 T 4 4
329 Cambodia 27723 A 4 4
330 Cambodia 27724 A 4 4
331 Cambodia 27725 C 4 4
332 Cambodia 27726 A 4 4
333 Cambodia 27727 C 4 4
334 Cambodia 27728 T 4 4
335 Cambodia 27729 T 4 4
336 Cambodia 27730 T 4 4
337 Cambodia 27731 G 4 4
338 Cambodia 27732 C 4 4
339 Cambodia 27733 T 4 4
340 Cambodia 27734 T 4 4
341 Cambodia 27735 C 4 4
342 Cambodia 27736 A 4 4
343 Cambodia 27737 C 4 4
344 Cambodia 27738 A 4 4
345 Cambodia 27739 C 4 4
346 Cambodia 27740 T 4 4
347 Cambodia 27741 C 4 4
348 Cambodia 27742 A 4 4
349 Cambodia 27743 A 4 4
350 Cambodia 27744 A 4 4
351 Cambodia 27745 A 4 4
352 Cambodia 27746 G 4 4
353 Cambodia 27747 A 4 4
354 Cambodia 27748 A 4 4
355 Cambodia 27749 A 4 4
356 Cambodia 27750 G 4 4
357 Cambodia 27751 A 4 4
358 Cambodia 27752 C 4 4
359 Cambodia 27753 A 4 4
360 Cambodia 27754 G 4 4
361 Cambodia 27755 A 4 4
362 Cambodia 27756 A 4 4
363 Cambodia 27757 T 4 4
364 Cambodia 27758 G 4 4
365 Cambodia 27759 A 4 4