National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 3                             1 1    
C     18                                      
D     6     2                                
E 2   24     1                                
F     30         1                     1      
G     12                               1      
H     9                                     1
I     25                   1                  
K     21                 1     1         1    
L     45                   2     2   1        
M     6                                      
N     6                                      
P     18                   2         2 1      
Q 1   15             2             1          
R     15               1                      
S     21   1               1           1      
T     30               5                 1    
V     24         2     1   1               1  
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Brazil 27394 A 2138 2138
1 Brazil 27395 T 2139 2139
2 Brazil 27396 G 2139 2139
3 Brazil 27397 A 2139 2139
4 Brazil 27398 A 2139 2139
5 Brazil 27399 A 2139 2138
6 Brazil 27400 A 2139 2139
7 Brazil 27401 T 2139 2138
8 Brazil 27402 T 2139 2139
9 Brazil 27403 A 2139 2139
10 Brazil 27404 T 2139 2139
11 Brazil 27405 T 2139 2139
12 Brazil 27406 C 2139 2139
13 Brazil 27407 T C 2139 2135 Leu5Pro
14 Brazil 27408 T 2139 2139
15 Brazil 27409 T 2139 2139
16 Brazil 27410 T 2139 2139
17 Brazil 27411 C 2139 2139
18 Brazil 27412 T 2139 2139
19 Brazil 27413 T 2139 2139
20 Brazil 27414 G 2139 2139
21 Brazil 27415 G 2139 2139
22 Brazil 27416 C 2139 2139
23 Brazil 27417 A 2139 2139
24 Brazil 27418 C 2139 2139
25 Brazil 27419 T C 2139 2138 Leu9Pro
26 Brazil 27420 G T 2139 2137 Leu9Leu
27 Brazil 27421 A C 2139 2137 Ile10Leu
28 Brazil 27422 T 2139 2139
29 Brazil 27423 A 2139 2139
30 Brazil 27424 A 2139 2139
31 Brazil 27425 C T 2139 2138 Thr11Ile
32 Brazil 27426 A G 2139 2138 Thr11Thr
33 Brazil 27427 C 2139 2139
34 Brazil 27428 T 2139 2139
35 Brazil 27429 C 2139 2139
36 Brazil 27430 G A 2139 2138 Ala13Thr
37 Brazil 27431 C 2139 2139
38 Brazil 27432 T 2139 2139
39 Brazil 27433 A 2139 2139
40 Brazil 27434 C T 2139 2133 Thr14Ile
41 Brazil 27435 T 2139 2139
42 Brazil 27436 T 2139 2139
43 Brazil 27437 G 2139 2139
44 Brazil 27438 T 2139 2139
45 Brazil 27439 G 2140 2140
46 Brazil 27440 A 2140 2140
47 Brazil 27441 G 2140 2140
48 Brazil 27442 C 2140 2140
49 Brazil 27443 T 2140 2140
50 Brazil 27444 T 2140 2140
51 Brazil 27445 T 2140 2140
52 Brazil 27446 A 2140 2140
53 Brazil 27447 T 2140 2140
54 Brazil 27448 C 2140 2140
55 Brazil 27449 A 2140 2140
56 Brazil 27450 C 2140 2140
57 Brazil 27451 T 2140 2140
58 Brazil 27452 A 2140 2140
59 Brazil 27453 C 2140 2140
60 Brazil 27454 C 2140 2140
61 Brazil 27455 A 2140 2140
62 Brazil 27456 A C 2140 2139 Gln21His
63 Brazil 27457 G 2140 2140
64 Brazil 27458 A 2140 2140
65 Brazil 27459 G T 2140 2139 Glu22Asp
66 Brazil 27460 T 2140 2140
67 Brazil 27461 G 2140 2140
68 Brazil 27462 T 2140 2140
69 Brazil 27463 G 2140 2140
70 Brazil 27464 T 2140 2140
71 Brazil 27465 T 2140 2140
72 Brazil 27466 A 2140 2140
73 Brazil 27467 G 2140 2140
74 Brazil 27468 A 2140 2140
75 Brazil 27469 G A 2140 2139 Gly26Ser
76 Brazil 27470 G 2140 2140
77 Brazil 27471 T 2140 2140
78 Brazil 27472 A 2140 2140
79 Brazil 27473 C 2140 2140
80 Brazil 27474 A 2140 2140
81 Brazil 27475 A 2140 2140
82 Brazil 27476 C T 2140 2138 Thr28Ile
83 Brazil 27477 A 2140 2140
84 Brazil 27478 G T 2140 2139 Val29Leu
85 Brazil 27479 T 2140 2140
86 Brazil 27480 A 2140 2140
87 Brazil 27481 C 2140 2140
88 Brazil 27482 T G 2140 2139 Leu30Arg
89 Brazil 27483 T 2140 2140
90 Brazil 27484 T 2140 2140
91 Brazil 27485 T 2140 2140
92 Brazil 27486 A 2139 2139
93 Brazil 27487 A 2139 2139
94 Brazil 27488 A 2138 2138
95 Brazil 27489 A 2137 2137
96 Brazil 27490 G 2137 2137
97 Brazil 27491 A 2138 2138
98 Brazil 27492 A 2138 2138
99 Brazil 27493 C T 2138 2136 Pro34Ser
100 Brazil 27494 C G 2138 2137 Pro34Arg
101 Brazil 27495 T 2138 2138
102 Brazil 27496 T 2138 2138
103 Brazil 27497 G 2139 2139
104 Brazil 27498 C 2141 2141
105 Brazil 27499 T 2141 2141
106 Brazil 27500 C 2141 2141
107 Brazil 27501 T G 2141 2140 Ser36Ser
108 Brazil 27502 T 2140 2140
109 Brazil 27503 C 2140 2140
110 Brazil 27504 T 2138 2138
111 Brazil 27505 G 2136 2136
112 Brazil 27506 G 2136 2136
113 Brazil 27507 A 2133 2133
114 Brazil 27508 A 2131 2131
115 Brazil 27509 C 2130 2130
116 Brazil 27510 A 2130 2130
117 Brazil 27511 T 2129 2129
118 Brazil 27512 A 1960 1947
119 Brazil 27513 C 1959 1946
120 Brazil 27514 G 1956 1944
121 Brazil 27515 A 1955 1943
122 Brazil 27516 G 1955 1943
123 Brazil 27517 G 1954 1943
124 Brazil 27518 G 1953 1942
125 Brazil 27519 C 1951 1940
126 Brazil 27520 A 1948 1937
127 Brazil 27521 A 1947 1936
128 Brazil 27522 T 1947 1935
129 Brazil 27523 T 1944 1932
130 Brazil 27524 C T 1943 1929 Ser44Leu
131 Brazil 27525 A 1942 1930
132 Brazil 27526 C 1942 1930
133 Brazil 27527 C 1940 1928
134 Brazil 27528 A 1939 1927
135 Brazil 27529 T 1937 1926
136 Brazil 27530 T 1934 1923
137 Brazil 27531 T 1934 1924
138 Brazil 27532 C 1934 1924
139 Brazil 27533 A 1933 1923
140 Brazil 27534 T 1930 1927
141 Brazil 27535 C 1930 1927
142 Brazil 27536 C 1930 1927
143 Brazil 27537 T 1930 1926
144 Brazil 27538 C 1929 1925
145 Brazil 27539 T 1929 1927
146 Brazil 27540 A 1929 1927
147 Brazil 27541 G T 1929 1926 Ala50Ser
148 Brazil 27542 C 1929 1927
149 Brazil 27543 T 1929 1927
150 Brazil 27544 G 1929 1927
151 Brazil 27545 A 1929 1927
152 Brazil 27546 T C 1929 1926 Asp51Asp
153 Brazil 27547 A 1929 1927
154 Brazil 27548 A 1929 1927
155 Brazil 27549 C 1929 1927
156 Brazil 27550 A 1929 1928
157 Brazil 27551 A C 1929 1927 Lys53Thr
158 Brazil 27552 A 1929 1928
159 Brazil 27553 T 1929 1928
160 Brazil 27554 T 1929 1928
161 Brazil 27555 T 1928 1927
162 Brazil 27556 G 1928 1927
163 Brazil 27557 C 1928 1927
164 Brazil 27558 A 1928 1927
165 Brazil 27559 C 1928 1927
166 Brazil 27560 T 1928 1928
167 Brazil 27561 G 1928 1928
168 Brazil 27562 A 1928 1928
169 Brazil 27563 C 1928 1928
170 Brazil 27564 T 1928 1928
171 Brazil 27565 T 1928 1928
172 Brazil 27566 G 1928 1928
173 Brazil 27567 C 1928 1928
174 Brazil 27568 T 1928 1928
175 Brazil 27569 T C 1928 1927 Phe59Ser
176 Brazil 27570 T 1928 1928
177 Brazil 27571 A T 1928 1926 Ser60Cys
178 Brazil 27572 G 1928 1928
179 Brazil 27573 C 1928 1928
180 Brazil 27574 A 1926 1926
181 Brazil 27575 C T 1926 1925 Thr61Ile
182 Brazil 27576 T 1926 1926
183 Brazil 27577 C 1926 1926
184 Brazil 27578 A 1926 1926
185 Brazil 27579 A 1926 1926
186 Brazil 27580 T 1928 1928
187 Brazil 27581 T 1928 1928
188 Brazil 27582 T 1928 1928
189 Brazil 27583 G 1928 1928
190 Brazil 27584 C 1928 1927
191 Brazil 27585 T 1929 1928
192 Brazil 27586 T 1928 1927
193 Brazil 27587 T 1928 1927
194 Brazil 27588 T 1929 1928
195 Brazil 27589 G 1929 1928
196 Brazil 27590 C 1929 1928
197 Brazil 27591 T 1929 1928
198 Brazil 27592 T 1929 1928
199 Brazil 27593 G 1931 1930
200 Brazil 27594 T 1931 1930
201 Brazil 27595 C 1932 1932
202 Brazil 27596 C 1932 1932
203 Brazil 27597 T 1933 1932
204 Brazil 27598 G 1934 1933
205 Brazil 27599 A 1936 1934
206 Brazil 27600 C T 1939 1936 Asp69Asp
207 Brazil 27601 G 1941 1937
208 Brazil 27602 G 1941 1936
209 Brazil 27603 C 1941 1938
210 Brazil 27604 G 1941 1939
211 Brazil 27605 T 1944 1942
212 Brazil 27606 A 1945 1943
213 Brazil 27607 A 1946 1944
214 Brazil 27608 A 1946 1944
215 Brazil 27609 A 1946 1944
216 Brazil 27610 C T 1946 1940 His73Tyr
217 Brazil 27611 A 1946 1945
218 Brazil 27612 C 1946 1945
219 Brazil 27613 G T 1946 1943 Val74Phe
220 Brazil 27614 T 1946 1944
221 Brazil 27615 C T 1946 1943 Val74Val
222 Brazil 27616 T 1946 1944
223 Brazil 27617 A 1946 1945
224 Brazil 27618 T 1946 1945
225 Brazil 27619 C 1946 1946
226 Brazil 27620 A 1946 1946
227 Brazil 27621 G A 1946 1944 Gln76Gln
228 Brazil 27622 T 1946 1945
229 Brazil 27623 T 1946 1945
230 Brazil 27624 A 1946 1945
231 Brazil 27625 C 1946 1945
232 Brazil 27626 G 1946 1945
233 Brazil 27627 T 1946 1945
234 Brazil 27628 G 1946 1945
235 Brazil 27629 C 1946 1945
236 Brazil 27630 C T,A 1946 1940 Ala79Ala-p.Ala79Ala
237 Brazil 27631 A 1946 1945
238 Brazil 27632 G 1946 1944
239 Brazil 27633 A 1946 1944
240 Brazil 27634 T 1950 1948
241 Brazil 27635 C 1950 1948
242 Brazil 27636 A 1950 1948
243 Brazil 27637 G A 1950 1947 Val82Ile
244 Brazil 27638 T 1949 1947
245 Brazil 27639 T 1949 1947
246 Brazil 27640 T 1949 1947
247 Brazil 27641 C 1949 1947
248 Brazil 27642 A 1948 1947
249 Brazil 27643 C 1948 1947
250 Brazil 27644 C T,G 1948 1944 Pro84Leu-p.Pro84Arg
251 Brazil 27645 T 1948 1947
252 Brazil 27646 A 1948 1947
253 Brazil 27647 A 1948 1947
254 Brazil 27648 A G 1948 1946 Lys85Lys
255 Brazil 27649 C 1948 1947
256 Brazil 27650 T 1948 1947
257 Brazil 27651 G 1948 1947
258 Brazil 27652 T 1948 1947
259 Brazil 27653 T 1948 1947
260 Brazil 27654 C T 1948 1946 Phe87Phe
261 Brazil 27655 A 1948 1947
262 Brazil 27656 T 1948 1948
263 Brazil 27657 C 1948 1948
264 Brazil 27658 A 1948 1948
265 Brazil 27659 G 1948 1948
266 Brazil 27660 A 1948 1948
267 Brazil 27661 C 1948 1948
268 Brazil 27662 A 1948 1948
269 Brazil 27663 A 1948 1948
270 Brazil 27664 G 1948 1948
271 Brazil 27665 A 1948 1948
272 Brazil 27666 G 1948 1948
273 Brazil 27667 G 1948 1948
274 Brazil 27668 A 1948 1948
275 Brazil 27669 A 1948 1948
276 Brazil 27670 G T 1948 1946 Val93Phe
277 Brazil 27671 T 1948 1948
278 Brazil 27672 T 1948 1948
279 Brazil 27673 C T 1948 1947 Gln94*
280 Brazil 27674 A 1948 1948
281 Brazil 27675 A C 1948 1947 Gln94His
282 Brazil 27676 G T 1948 1947 Glu95*
283 Brazil 27677 A 1948 1948
284 Brazil 27678 A 1948 1947
285 Brazil 27679 C 1947 1946
286 Brazil 27680 T 1947 1945
287 Brazil 27681 T 1947 1945
288 Brazil 27682 T 1947 1946
289 Brazil 27683 A 1947 1946
290 Brazil 27684 C T 1947 1944 Tyr97Tyr
291 Brazil 27685 T 1947 1945
292 Brazil 27686 C 1947 1946
293 Brazil 27687 T 1946 1945
294 Brazil 27688 C 1946 1945
295 Brazil 27689 C T 1946 1943 Pro99Leu
296 Brazil 27690 A 1946 1944
297 Brazil 27691 A 1946 1942
298 Brazil 27692 T 1946 1945
299 Brazil 27693 T 1945 1943
300 Brazil 27694 T 1943 1941
301 Brazil 27695 T 1943 1941
302 Brazil 27696 T 1943 1941
303 Brazil 27697 C 1943 1941
304 Brazil 27698 T 1943 1942
305 Brazil 27699 T 1943 1942
306 Brazil 27700 A 1943 1942
307 Brazil 27701 T 1943 1942
308 Brazil 27702 T 1943 1943
309 Brazil 27703 G 1943 1943
310 Brazil 27704 T 1943 1943
311 Brazil 27705 T 1943 1943
312 Brazil 27706 G 1943 1943
313 Brazil 27707 C 1943 1943
314 Brazil 27708 G A 1943 1939 Ala105Ala
315 Brazil 27709 G 1943 1943
316 Brazil 27710 C 1943 1943
317 Brazil 27711 A 1943 1943
318 Brazil 27712 A 1943 1943
319 Brazil 27713 T 1943 1942
320 Brazil 27714 A 1943 1942
321 Brazil 27715 G 1943 1942
322 Brazil 27716 T 1943 1942
323 Brazil 27717 G 1943 1942
324 Brazil 27718 T 1943 1942
325 Brazil 27719 T 1943 1943
326 Brazil 27720 T 1943 1943
327 Brazil 27721 A 1943 1943
328 Brazil 27722 T 1943 1943
329 Brazil 27723 A 1943 1943
330 Brazil 27724 A 1943 1943
331 Brazil 27725 C 1943 1943
332 Brazil 27726 A 1943 1942
333 Brazil 27727 C 1942 1940
334 Brazil 27728 T 1942 1940
335 Brazil 27729 T 1942 1939
336 Brazil 27730 T 1942 1939
337 Brazil 27731 G 1942 1939
338 Brazil 27732 C 1942 1939
339 Brazil 27733 T 1942 1939
340 Brazil 27734 T 1942 1939
341 Brazil 27735 C 1942 1939
342 Brazil 27736 A 1942 1939
343 Brazil 27737 C 1942 1940
344 Brazil 27738 A 1942 1942
345 Brazil 27739 C 1942 1942
346 Brazil 27740 T 1942 1942
347 Brazil 27741 C T 1942 1928 Leu116Leu
348 Brazil 27742 A 1942 1942
349 Brazil 27743 A 1942 1942
350 Brazil 27744 A 1942 1942
351 Brazil 27745 A 1942 1942
352 Brazil 27746 G T 1942 1941 Arg118Ile
353 Brazil 27747 A 1942 1942
354 Brazil 27748 A 1942 1942
355 Brazil 27749 A 1942 1942
356 Brazil 27750 G T 1942 1941 Lys119Asn
357 Brazil 27751 A 1942 1942
358 Brazil 27752 C T 1942 1939 Thr120Ile
359 Brazil 27753 A 1942 1942
360 Brazil 27754 G T 1942 1941 Glu121*
361 Brazil 27755 A 1942 1942
362 Brazil 27756 A 1942 1942
363 Brazil 27757 T 1942 1942
364 Brazil 27758 G 1942 1942
365 Brazil 27759 A 1942 1942