National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Botswana 27394 A 13 13
1 Botswana 27395 T 13 13
2 Botswana 27396 G 13 13
3 Botswana 27397 A 13 13
4 Botswana 27398 A 13 13
5 Botswana 27399 A 13 13
6 Botswana 27400 A 13 13
7 Botswana 27401 T 13 13
8 Botswana 27402 T 13 13
9 Botswana 27403 A 13 13
10 Botswana 27404 T 13 13
11 Botswana 27405 T 13 13
12 Botswana 27406 C 13 13
13 Botswana 27407 T 13 13
14 Botswana 27408 T 13 13
15 Botswana 27409 T 13 13
16 Botswana 27410 T 13 13
17 Botswana 27411 C 13 13
18 Botswana 27412 T 13 13
19 Botswana 27413 T 13 13
20 Botswana 27414 G 13 13
21 Botswana 27415 G 13 13
22 Botswana 27416 C 13 13
23 Botswana 27417 A 13 13
24 Botswana 27418 C 13 13
25 Botswana 27419 T 13 13
26 Botswana 27420 G 13 13
27 Botswana 27421 A 13 13
28 Botswana 27422 T 13 13
29 Botswana 27423 A 13 13
30 Botswana 27424 A 13 13
31 Botswana 27425 C 13 13
32 Botswana 27426 A 13 13
33 Botswana 27427 C 13 13
34 Botswana 27428 T 13 13
35 Botswana 27429 C 13 13
36 Botswana 27430 G 13 13
37 Botswana 27431 C 13 13
38 Botswana 27432 T 13 13
39 Botswana 27433 A 13 13
40 Botswana 27434 C 13 13
41 Botswana 27435 T 13 13
42 Botswana 27436 T 13 13
43 Botswana 27437 G 13 13
44 Botswana 27438 T 13 13
45 Botswana 27439 G 13 13
46 Botswana 27440 A 13 13
47 Botswana 27441 G 13 13
48 Botswana 27442 C 13 13
49 Botswana 27443 T 13 13
50 Botswana 27444 T 13 13
51 Botswana 27445 T 13 13
52 Botswana 27446 A 13 13
53 Botswana 27447 T 13 13
54 Botswana 27448 C 13 13
55 Botswana 27449 A 13 13
56 Botswana 27450 C 13 13
57 Botswana 27451 T 13 13
58 Botswana 27452 A 13 13
59 Botswana 27453 C 13 13
60 Botswana 27454 C 13 13
61 Botswana 27455 A 13 13
62 Botswana 27456 A 13 13
63 Botswana 27457 G 13 13
64 Botswana 27458 A 13 13
65 Botswana 27459 G 13 13
66 Botswana 27460 T 13 13
67 Botswana 27461 G 13 13
68 Botswana 27462 T 13 13
69 Botswana 27463 G 13 13
70 Botswana 27464 T 13 13
71 Botswana 27465 T 13 13
72 Botswana 27466 A 13 13
73 Botswana 27467 G 13 13
74 Botswana 27468 A 13 13
75 Botswana 27469 G 13 13
76 Botswana 27470 G 13 13
77 Botswana 27471 T 13 13
78 Botswana 27472 A 13 13
79 Botswana 27473 C 13 13
80 Botswana 27474 A 13 13
81 Botswana 27475 A 13 13
82 Botswana 27476 C 13 13
83 Botswana 27477 A 13 13
84 Botswana 27478 G 13 13
85 Botswana 27479 T 13 13
86 Botswana 27480 A 13 13
87 Botswana 27481 C 13 13
88 Botswana 27482 T 13 13
89 Botswana 27483 T 13 13
90 Botswana 27484 T 13 13
91 Botswana 27485 T 13 12
92 Botswana 27486 A 13 12
93 Botswana 27487 A 13 13
94 Botswana 27488 A 13 13
95 Botswana 27489 A 13 13
96 Botswana 27490 G 13 13
97 Botswana 27491 A 13 13
98 Botswana 27492 A 13 13
99 Botswana 27493 C 13 13
100 Botswana 27494 C 13 13
101 Botswana 27495 T 13 13
102 Botswana 27496 T 13 13
103 Botswana 27497 G 13 13
104 Botswana 27498 C 13 13
105 Botswana 27499 T 13 13
106 Botswana 27500 C 13 13
107 Botswana 27501 T 13 13
108 Botswana 27502 T 13 13
109 Botswana 27503 C 13 13
110 Botswana 27504 T 13 13
111 Botswana 27505 G 13 13
112 Botswana 27506 G 13 13
113 Botswana 27507 A 13 13
114 Botswana 27508 A 13 13
115 Botswana 27509 C 13 13
116 Botswana 27510 A 13 13
117 Botswana 27511 T 13 13
118 Botswana 27512 A 9 9
119 Botswana 27513 C 9 9
120 Botswana 27514 G 9 9
121 Botswana 27515 A 9 9
122 Botswana 27516 G 9 9
123 Botswana 27517 G 9 9
124 Botswana 27518 G 9 9
125 Botswana 27519 C 9 9
126 Botswana 27520 A 9 9
127 Botswana 27521 A 9 9
128 Botswana 27522 T 9 9
129 Botswana 27523 T 9 9
130 Botswana 27524 C 9 9
131 Botswana 27525 A 9 9
132 Botswana 27526 C 9 9
133 Botswana 27527 C 9 9
134 Botswana 27528 A 9 9
135 Botswana 27529 T 9 9
136 Botswana 27530 T 9 9
137 Botswana 27531 T 9 9
138 Botswana 27532 C 9 9
139 Botswana 27533 A 9 9
140 Botswana 27534 T 9 9
141 Botswana 27535 C 9 9
142 Botswana 27536 C 9 9
143 Botswana 27537 T 9 9
144 Botswana 27538 C 9 9
145 Botswana 27539 T 9 9
146 Botswana 27540 A 9 9
147 Botswana 27541 G 9 9
148 Botswana 27542 C 9 9
149 Botswana 27543 T 9 9
150 Botswana 27544 G 9 9
151 Botswana 27545 A 9 9
152 Botswana 27546 T 9 9
153 Botswana 27547 A 9 9
154 Botswana 27548 A 9 9
155 Botswana 27549 C 9 9
156 Botswana 27550 A 9 9
157 Botswana 27551 A 9 9
158 Botswana 27552 A 9 9
159 Botswana 27553 T 9 9
160 Botswana 27554 T 9 9
161 Botswana 27555 T 9 9
162 Botswana 27556 G 9 9
163 Botswana 27557 C 9 9
164 Botswana 27558 A 9 9
165 Botswana 27559 C 9 9
166 Botswana 27560 T 9 9
167 Botswana 27561 G 9 9
168 Botswana 27562 A 9 9
169 Botswana 27563 C 9 9
170 Botswana 27564 T 9 9
171 Botswana 27565 T 9 9
172 Botswana 27566 G 9 9
173 Botswana 27567 C 9 9
174 Botswana 27568 T 9 9
175 Botswana 27569 T 9 9
176 Botswana 27570 T 9 9
177 Botswana 27571 A 9 9
178 Botswana 27572 G 9 9
179 Botswana 27573 C 9 9
180 Botswana 27574 A 9 9
181 Botswana 27575 C 9 9
182 Botswana 27576 T 9 9
183 Botswana 27577 C 9 9
184 Botswana 27578 A 9 9
185 Botswana 27579 A 9 9
186 Botswana 27580 T 9 9
187 Botswana 27581 T 9 9
188 Botswana 27582 T 9 9
189 Botswana 27583 G 9 9
190 Botswana 27584 C 9 9
191 Botswana 27585 T 9 9
192 Botswana 27586 T 9 9
193 Botswana 27587 T 9 9
194 Botswana 27588 T 9 9
195 Botswana 27589 G 9 9
196 Botswana 27590 C 9 9
197 Botswana 27591 T 9 9
198 Botswana 27592 T 9 9
199 Botswana 27593 G 9 9
200 Botswana 27594 T 9 9
201 Botswana 27595 C 9 9
202 Botswana 27596 C 9 9
203 Botswana 27597 T 9 9
204 Botswana 27598 G 9 9
205 Botswana 27599 A 9 9
206 Botswana 27600 C 9 9
207 Botswana 27601 G 9 9
208 Botswana 27602 G 9 9
209 Botswana 27603 C 9 9
210 Botswana 27604 G 9 9
211 Botswana 27605 T 9 9
212 Botswana 27606 A 9 9
213 Botswana 27607 A 9 9
214 Botswana 27608 A 9 9
215 Botswana 27609 A 9 9
216 Botswana 27610 C 9 9
217 Botswana 27611 A 9 9
218 Botswana 27612 C 9 9
219 Botswana 27613 G 9 9
220 Botswana 27614 T 9 9
221 Botswana 27615 C 9 9
222 Botswana 27616 T 9 9
223 Botswana 27617 A 9 9
224 Botswana 27618 T 9 9
225 Botswana 27619 C 9 9
226 Botswana 27620 A 9 9
227 Botswana 27621 G 9 9
228 Botswana 27622 T 9 9
229 Botswana 27623 T 9 9
230 Botswana 27624 A 9 9
231 Botswana 27625 C 9 9
232 Botswana 27626 G 9 9
233 Botswana 27627 T 9 9
234 Botswana 27628 G 9 9
235 Botswana 27629 C 9 9
236 Botswana 27630 C 9 9
237 Botswana 27631 A 9 9
238 Botswana 27632 G 9 9
239 Botswana 27633 A 9 9
240 Botswana 27634 T 9 9
241 Botswana 27635 C 9 9
242 Botswana 27636 A 9 9
243 Botswana 27637 G 9 9
244 Botswana 27638 T 9 9
245 Botswana 27639 T 9 9
246 Botswana 27640 T 9 9
247 Botswana 27641 C 9 9
248 Botswana 27642 A 9 9
249 Botswana 27643 C 9 9
250 Botswana 27644 C 9 9
251 Botswana 27645 T 9 9
252 Botswana 27646 A 9 9
253 Botswana 27647 A 9 9
254 Botswana 27648 A 9 9
255 Botswana 27649 C 9 9
256 Botswana 27650 T 9 9
257 Botswana 27651 G 9 9
258 Botswana 27652 T 9 9
259 Botswana 27653 T 9 9
260 Botswana 27654 C 9 9
261 Botswana 27655 A 9 9
262 Botswana 27656 T 9 9
263 Botswana 27657 C 9 9
264 Botswana 27658 A 9 9
265 Botswana 27659 G 9 9
266 Botswana 27660 A 9 9
267 Botswana 27661 C 9 9
268 Botswana 27662 A 9 9
269 Botswana 27663 A 9 9
270 Botswana 27664 G 9 9
271 Botswana 27665 A 9 9
272 Botswana 27666 G 9 9
273 Botswana 27667 G 9 9
274 Botswana 27668 A 9 9
275 Botswana 27669 A 9 9
276 Botswana 27670 G 9 9
277 Botswana 27671 T 9 9
278 Botswana 27672 T 9 9
279 Botswana 27673 C 9 9
280 Botswana 27674 A 9 9
281 Botswana 27675 A 9 9
282 Botswana 27676 G 9 9
283 Botswana 27677 A 9 9
284 Botswana 27678 A 9 9
285 Botswana 27679 C 9 9
286 Botswana 27680 T 9 9
287 Botswana 27681 T 9 9
288 Botswana 27682 T 9 9
289 Botswana 27683 A 9 9
290 Botswana 27684 C 9 9
291 Botswana 27685 T 9 9
292 Botswana 27686 C 9 9
293 Botswana 27687 T 9 9
294 Botswana 27688 C 9 9
295 Botswana 27689 C 9 9
296 Botswana 27690 A 9 9
297 Botswana 27691 A 9 9
298 Botswana 27692 T 9 9
299 Botswana 27693 T 9 9
300 Botswana 27694 T 9 9
301 Botswana 27695 T 9 9
302 Botswana 27696 T 9 9
303 Botswana 27697 C 9 9
304 Botswana 27698 T 9 9
305 Botswana 27699 T 9 9
306 Botswana 27700 A 9 9
307 Botswana 27701 T 9 9
308 Botswana 27702 T 9 9
309 Botswana 27703 G 9 9
310 Botswana 27704 T 9 9
311 Botswana 27705 T 9 9
312 Botswana 27706 G 9 9
313 Botswana 27707 C 9 9
314 Botswana 27708 G 9 9
315 Botswana 27709 G 9 9
316 Botswana 27710 C 9 9
317 Botswana 27711 A 9 9
318 Botswana 27712 A 9 9
319 Botswana 27713 T 9 9
320 Botswana 27714 A 9 9
321 Botswana 27715 G 9 9
322 Botswana 27716 T 9 9
323 Botswana 27717 G 9 9
324 Botswana 27718 T 9 9
325 Botswana 27719 T 9 9
326 Botswana 27720 T 9 9
327 Botswana 27721 A 9 9
328 Botswana 27722 T 9 9
329 Botswana 27723 A 9 9
330 Botswana 27724 A 9 9
331 Botswana 27725 C 9 9
332 Botswana 27726 A 9 9
333 Botswana 27727 C 9 9
334 Botswana 27728 T 9 9
335 Botswana 27729 T 9 9
336 Botswana 27730 T 9 9
337 Botswana 27731 G 9 9
338 Botswana 27732 C 9 9
339 Botswana 27733 T 9 9
340 Botswana 27734 T 9 9
341 Botswana 27735 C 9 9
342 Botswana 27736 A 9 9
343 Botswana 27737 C 9 9
344 Botswana 27738 A 9 9
345 Botswana 27739 C 9 9
346 Botswana 27740 T 9 9
347 Botswana 27741 C 9 9
348 Botswana 27742 A 9 9
349 Botswana 27743 A 9 9
350 Botswana 27744 A 9 9
351 Botswana 27745 A 9 9
352 Botswana 27746 G 9 9
353 Botswana 27747 A 9 9
354 Botswana 27748 A 9 9
355 Botswana 27749 A 9 9
356 Botswana 27750 G 9 9
357 Botswana 27751 A 9 9
358 Botswana 27752 C 9 9
359 Botswana 27753 A 9 9
360 Botswana 27754 G 9 9
361 Botswana 27755 A 9 9
362 Botswana 27756 A 9 9
363 Botswana 27757 T 9 9
364 Botswana 27758 G 9 9
365 Botswana 27759 A 9 9