National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q 1   15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Bolivia 27394 A 27 27
1 Bolivia 27395 T 27 27
2 Bolivia 27396 G 27 27
3 Bolivia 27397 A 27 27
4 Bolivia 27398 A 27 27
5 Bolivia 27399 A 27 27
6 Bolivia 27400 A 27 27
7 Bolivia 27401 T 27 27
8 Bolivia 27402 T 27 27
9 Bolivia 27403 A 27 27
10 Bolivia 27404 T 27 27
11 Bolivia 27405 T 27 27
12 Bolivia 27406 C 27 27
13 Bolivia 27407 T 27 27
14 Bolivia 27408 T 27 27
15 Bolivia 27409 T 27 27
16 Bolivia 27410 T 27 27
17 Bolivia 27411 C 27 27
18 Bolivia 27412 T 27 27
19 Bolivia 27413 T 27 27
20 Bolivia 27414 G 27 27
21 Bolivia 27415 G 27 27
22 Bolivia 27416 C 27 27
23 Bolivia 27417 A 27 27
24 Bolivia 27418 C 27 27
25 Bolivia 27419 T 27 27
26 Bolivia 27420 G 27 27
27 Bolivia 27421 A 27 27
28 Bolivia 27422 T 27 27
29 Bolivia 27423 A 27 27
30 Bolivia 27424 A 27 27
31 Bolivia 27425 C 27 27
32 Bolivia 27426 A 27 27
33 Bolivia 27427 C 27 27
34 Bolivia 27428 T 27 27
35 Bolivia 27429 C 27 27
36 Bolivia 27430 G 27 27
37 Bolivia 27431 C 27 27
38 Bolivia 27432 T 27 27
39 Bolivia 27433 A 27 27
40 Bolivia 27434 C 27 27
41 Bolivia 27435 T 27 27
42 Bolivia 27436 T 27 27
43 Bolivia 27437 G 27 27
44 Bolivia 27438 T 27 27
45 Bolivia 27439 G 27 27
46 Bolivia 27440 A 27 27
47 Bolivia 27441 G 27 27
48 Bolivia 27442 C 27 27
49 Bolivia 27443 T 27 27
50 Bolivia 27444 T 27 27
51 Bolivia 27445 T 27 27
52 Bolivia 27446 A 27 27
53 Bolivia 27447 T 27 27
54 Bolivia 27448 C 27 27
55 Bolivia 27449 A 27 27
56 Bolivia 27450 C 27 27
57 Bolivia 27451 T 27 27
58 Bolivia 27452 A 27 27
59 Bolivia 27453 C 27 27
60 Bolivia 27454 C 27 27
61 Bolivia 27455 A 27 27
62 Bolivia 27456 A 27 27
63 Bolivia 27457 G 27 27
64 Bolivia 27458 A 27 27
65 Bolivia 27459 G 27 27
66 Bolivia 27460 T 27 27
67 Bolivia 27461 G 27 27
68 Bolivia 27462 T 27 27
69 Bolivia 27463 G 27 27
70 Bolivia 27464 T 27 27
71 Bolivia 27465 T 27 27
72 Bolivia 27466 A 27 27
73 Bolivia 27467 G 27 27
74 Bolivia 27468 A 27 27
75 Bolivia 27469 G 27 27
76 Bolivia 27470 G 27 27
77 Bolivia 27471 T 27 27
78 Bolivia 27472 A 27 27
79 Bolivia 27473 C 27 27
80 Bolivia 27474 A 27 27
81 Bolivia 27475 A 27 27
82 Bolivia 27476 C 27 27
83 Bolivia 27477 A 27 27
84 Bolivia 27478 G 27 27
85 Bolivia 27479 T 27 27
86 Bolivia 27480 A 27 27
87 Bolivia 27481 C 27 27
88 Bolivia 27482 T 27 27
89 Bolivia 27483 T 27 27
90 Bolivia 27484 T 27 27
91 Bolivia 27485 T 27 27
92 Bolivia 27486 A 27 27
93 Bolivia 27487 A 27 27
94 Bolivia 27488 A 27 27
95 Bolivia 27489 A 27 27
96 Bolivia 27490 G 27 27
97 Bolivia 27491 A 27 27
98 Bolivia 27492 A 27 27
99 Bolivia 27493 C 27 27
100 Bolivia 27494 C 27 27
101 Bolivia 27495 T 27 27
102 Bolivia 27496 T 27 27
103 Bolivia 27497 G 27 27
104 Bolivia 27498 C 27 27
105 Bolivia 27499 T 27 27
106 Bolivia 27500 C 27 27
107 Bolivia 27501 T 27 27
108 Bolivia 27502 T 27 27
109 Bolivia 27503 C 27 27
110 Bolivia 27504 T 27 27
111 Bolivia 27505 G 27 27
112 Bolivia 27506 G 27 27
113 Bolivia 27507 A 27 27
114 Bolivia 27508 A 27 27
115 Bolivia 27509 C 27 27
116 Bolivia 27510 A 27 27
117 Bolivia 27511 T 27 27
118 Bolivia 27512 A 27 27
119 Bolivia 27513 C 27 27
120 Bolivia 27514 G 27 27
121 Bolivia 27515 A 27 27
122 Bolivia 27516 G 27 27
123 Bolivia 27517 G 27 27
124 Bolivia 27518 G 27 27
125 Bolivia 27519 C 27 27
126 Bolivia 27520 A 27 27
127 Bolivia 27521 A 27 27
128 Bolivia 27522 T 27 27
129 Bolivia 27523 T 27 27
130 Bolivia 27524 C 27 27
131 Bolivia 27525 A 27 27
132 Bolivia 27526 C 27 27
133 Bolivia 27527 C 27 27
134 Bolivia 27528 A 27 27
135 Bolivia 27529 T 27 27
136 Bolivia 27530 T 27 27
137 Bolivia 27531 T 27 27
138 Bolivia 27532 C 27 27
139 Bolivia 27533 A 27 27
140 Bolivia 27534 T 27 27
141 Bolivia 27535 C 27 27
142 Bolivia 27536 C 27 27
143 Bolivia 27537 T 27 27
144 Bolivia 27538 C 27 27
145 Bolivia 27539 T 27 27
146 Bolivia 27540 A 27 27
147 Bolivia 27541 G 27 27
148 Bolivia 27542 C 27 27
149 Bolivia 27543 T 27 27
150 Bolivia 27544 G 27 27
151 Bolivia 27545 A 27 27
152 Bolivia 27546 T 27 27
153 Bolivia 27547 A 27 27
154 Bolivia 27548 A 27 27
155 Bolivia 27549 C 27 27
156 Bolivia 27550 A 27 27
157 Bolivia 27551 A 27 27
158 Bolivia 27552 A 27 27
159 Bolivia 27553 T 27 27
160 Bolivia 27554 T 27 27
161 Bolivia 27555 T 27 27
162 Bolivia 27556 G 27 27
163 Bolivia 27557 C 27 27
164 Bolivia 27558 A 27 27
165 Bolivia 27559 C 27 27
166 Bolivia 27560 T 27 27
167 Bolivia 27561 G 27 27
168 Bolivia 27562 A 27 27
169 Bolivia 27563 C 27 27
170 Bolivia 27564 T 27 27
171 Bolivia 27565 T 27 27
172 Bolivia 27566 G 27 27
173 Bolivia 27567 C 27 27
174 Bolivia 27568 T 27 27
175 Bolivia 27569 T 27 27
176 Bolivia 27570 T 27 27
177 Bolivia 27571 A 27 27
178 Bolivia 27572 G 27 27
179 Bolivia 27573 C 27 27
180 Bolivia 27574 A 27 27
181 Bolivia 27575 C 27 27
182 Bolivia 27576 T 27 27
183 Bolivia 27577 C T 27 26 Gln62*
184 Bolivia 27578 A 27 27
185 Bolivia 27579 A 27 27
186 Bolivia 27580 T 27 27
187 Bolivia 27581 T 27 27
188 Bolivia 27582 T 27 27
189 Bolivia 27583 G 27 27
190 Bolivia 27584 C 27 27
191 Bolivia 27585 T 27 27
192 Bolivia 27586 T 27 27
193 Bolivia 27587 T 27 27
194 Bolivia 27588 T 27 27
195 Bolivia 27589 G 27 27
196 Bolivia 27590 C 27 27
197 Bolivia 27591 T 27 27
198 Bolivia 27592 T 27 27
199 Bolivia 27593 G 27 27
200 Bolivia 27594 T 27 27
201 Bolivia 27595 C 27 27
202 Bolivia 27596 C 27 27
203 Bolivia 27597 T 27 27
204 Bolivia 27598 G 27 27
205 Bolivia 27599 A 27 27
206 Bolivia 27600 C 27 27
207 Bolivia 27601 G 27 27
208 Bolivia 27602 G 27 27
209 Bolivia 27603 C 27 27
210 Bolivia 27604 G 27 27
211 Bolivia 27605 T 27 27
212 Bolivia 27606 A 27 27
213 Bolivia 27607 A 27 27
214 Bolivia 27608 A 27 27
215 Bolivia 27609 A 27 27
216 Bolivia 27610 C 27 27
217 Bolivia 27611 A 27 27
218 Bolivia 27612 C 27 27
219 Bolivia 27613 G 27 27
220 Bolivia 27614 T 27 27
221 Bolivia 27615 C 27 27
222 Bolivia 27616 T 27 27
223 Bolivia 27617 A 27 27
224 Bolivia 27618 T 27 27
225 Bolivia 27619 C 27 27
226 Bolivia 27620 A 27 27
227 Bolivia 27621 G 27 27
228 Bolivia 27622 T 27 27
229 Bolivia 27623 T 27 27
230 Bolivia 27624 A 27 27
231 Bolivia 27625 C 27 27
232 Bolivia 27626 G 27 27
233 Bolivia 27627 T 27 27
234 Bolivia 27628 G 27 27
235 Bolivia 27629 C 27 27
236 Bolivia 27630 C 27 27
237 Bolivia 27631 A 27 27
238 Bolivia 27632 G 27 27
239 Bolivia 27633 A 27 27
240 Bolivia 27634 T 27 27
241 Bolivia 27635 C 27 27
242 Bolivia 27636 A 27 27
243 Bolivia 27637 G 27 27
244 Bolivia 27638 T 27 27
245 Bolivia 27639 T 27 27
246 Bolivia 27640 T 27 27
247 Bolivia 27641 C 27 27
248 Bolivia 27642 A 27 27
249 Bolivia 27643 C 27 27
250 Bolivia 27644 C 27 27
251 Bolivia 27645 T 27 27
252 Bolivia 27646 A 27 27
253 Bolivia 27647 A 27 27
254 Bolivia 27648 A 27 27
255 Bolivia 27649 C 27 27
256 Bolivia 27650 T 27 27
257 Bolivia 27651 G 27 27
258 Bolivia 27652 T 27 27
259 Bolivia 27653 T 27 27
260 Bolivia 27654 C 27 27
261 Bolivia 27655 A 27 27
262 Bolivia 27656 T 27 27
263 Bolivia 27657 C 27 27
264 Bolivia 27658 A 27 27
265 Bolivia 27659 G 27 27
266 Bolivia 27660 A 27 27
267 Bolivia 27661 C 27 27
268 Bolivia 27662 A 27 27
269 Bolivia 27663 A 27 27
270 Bolivia 27664 G 27 27
271 Bolivia 27665 A 27 27
272 Bolivia 27666 G 27 27
273 Bolivia 27667 G 27 27
274 Bolivia 27668 A 27 27
275 Bolivia 27669 A 27 27
276 Bolivia 27670 G 27 27
277 Bolivia 27671 T 27 27
278 Bolivia 27672 T 27 27
279 Bolivia 27673 C 27 27
280 Bolivia 27674 A 27 27
281 Bolivia 27675 A 27 27
282 Bolivia 27676 G 27 27
283 Bolivia 27677 A 27 27
284 Bolivia 27678 A 27 27
285 Bolivia 27679 C 27 27
286 Bolivia 27680 T 27 27
287 Bolivia 27681 T 27 27
288 Bolivia 27682 T 27 27
289 Bolivia 27683 A 27 27
290 Bolivia 27684 C 27 27
291 Bolivia 27685 T 27 27
292 Bolivia 27686 C 27 27
293 Bolivia 27687 T 27 27
294 Bolivia 27688 C 27 27
295 Bolivia 27689 C 27 27
296 Bolivia 27690 A 27 27
297 Bolivia 27691 A 27 27
298 Bolivia 27692 T 27 27
299 Bolivia 27693 T 27 27
300 Bolivia 27694 T 27 27
301 Bolivia 27695 T 27 27
302 Bolivia 27696 T 27 27
303 Bolivia 27697 C 27 27
304 Bolivia 27698 T 27 27
305 Bolivia 27699 T 27 27
306 Bolivia 27700 A 27 27
307 Bolivia 27701 T 27 27
308 Bolivia 27702 T 27 27
309 Bolivia 27703 G 27 27
310 Bolivia 27704 T 27 27
311 Bolivia 27705 T 27 27
312 Bolivia 27706 G 27 27
313 Bolivia 27707 C 27 27
314 Bolivia 27708 G 27 27
315 Bolivia 27709 G 27 27
316 Bolivia 27710 C 27 27
317 Bolivia 27711 A 27 27
318 Bolivia 27712 A 27 27
319 Bolivia 27713 T 27 27
320 Bolivia 27714 A 27 27
321 Bolivia 27715 G 27 27
322 Bolivia 27716 T 27 27
323 Bolivia 27717 G 27 27
324 Bolivia 27718 T 27 27
325 Bolivia 27719 T 27 27
326 Bolivia 27720 T 27 27
327 Bolivia 27721 A 27 27
328 Bolivia 27722 T 27 27
329 Bolivia 27723 A 27 27
330 Bolivia 27724 A 27 27
331 Bolivia 27725 C 27 27
332 Bolivia 27726 A 27 27
333 Bolivia 27727 C 27 27
334 Bolivia 27728 T 27 27
335 Bolivia 27729 T 27 27
336 Bolivia 27730 T 27 27
337 Bolivia 27731 G 27 27
338 Bolivia 27732 C 27 27
339 Bolivia 27733 T 27 27
340 Bolivia 27734 T 27 27
341 Bolivia 27735 C 27 27
342 Bolivia 27736 A 27 27
343 Bolivia 27737 C 27 27
344 Bolivia 27738 A 27 27
345 Bolivia 27739 C 27 27
346 Bolivia 27740 T 27 27
347 Bolivia 27741 C 27 27
348 Bolivia 27742 A 27 27
349 Bolivia 27743 A 27 27
350 Bolivia 27744 A 27 27
351 Bolivia 27745 A 27 27
352 Bolivia 27746 G 27 27
353 Bolivia 27747 A 27 27
354 Bolivia 27748 A 27 27
355 Bolivia 27749 A 27 27
356 Bolivia 27750 G 27 27
357 Bolivia 27751 A 27 27
358 Bolivia 27752 C 27 27
359 Bolivia 27753 A 27 27
360 Bolivia 27754 G 27 27
361 Bolivia 27755 A 27 27
362 Bolivia 27756 A 27 27
363 Bolivia 27757 T 27 27
364 Bolivia 27758 G 27 27
365 Bolivia 27759 A 27 27