National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 2     1                       3      
C     18   1     1                   1 1      
D     6     1                               1
E 1   24       2         2                    
F     30                   1                  
G     12           1                   1      
H     9                                     1
I     25               1                 2 1  
K 1   21                       1              
L     45         4         4 1                
M     6                                   1  
N     6                       1              
P     18                   3     1     4      
Q 1   15             1             1          
R     15               1             2        
S     21         1               2            
T     30               6 1       1       1    
V     24 2       3     3   2                  
Y     15                                     3

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Belgium 27394 A 3689 3689
1 Belgium 27395 T 3689 3689
2 Belgium 27396 G 3689 3689
3 Belgium 27397 A T 3689 3688 Lys2*
4 Belgium 27398 A 3689 3689
5 Belgium 27399 A 3689 3689
6 Belgium 27400 A 3689 3689
7 Belgium 27401 T C 3689 3686 Ile3Thr
8 Belgium 27402 T 3689 3689
9 Belgium 27403 A 3689 3689
10 Belgium 27404 T 3689 3689
11 Belgium 27405 T 3689 3689
12 Belgium 27406 C 3689 3689
13 Belgium 27407 T 3689 3689
14 Belgium 27408 T 3689 3689
15 Belgium 27409 T C 3689 3688 Phe6Leu
16 Belgium 27410 T 3689 3689
17 Belgium 27411 C 3689 3689
18 Belgium 27412 T A 3689 3688 Leu7Met
19 Belgium 27413 T 3689 3689
20 Belgium 27414 G 3689 3689
21 Belgium 27415 G 3689 3689
22 Belgium 27416 C 3689 3689
23 Belgium 27417 A 3689 3689
24 Belgium 27418 C T 3689 3687 Leu9Leu
25 Belgium 27419 T 3689 3689
26 Belgium 27420 G 3689 3689
27 Belgium 27421 A G 3689 3688 Ile10Val
28 Belgium 27422 T 3689 3689
29 Belgium 27423 A 3689 3689
30 Belgium 27424 A 3689 3689
31 Belgium 27425 C T 3689 3688 Thr11Ile
32 Belgium 27426 A 3689 3689
33 Belgium 27427 C T 3689 3688 Leu12Phe
34 Belgium 27428 T 3689 3689
35 Belgium 27429 C 3689 3689
36 Belgium 27430 G T 3689 3688 Ala13Ser
37 Belgium 27431 C 3689 3689
38 Belgium 27432 T C 3689 3688 Ala13Ala
39 Belgium 27433 A 3689 3689
40 Belgium 27434 C T 3689 3624 Thr14Ile
41 Belgium 27435 T 3689 3689
42 Belgium 27436 T A,C 3689 3686 Cys15Ser-p.Cys15Arg
43 Belgium 27437 G 3689 3689
44 Belgium 27438 T 3689 3689
45 Belgium 27439 G 3689 3689
46 Belgium 27440 A 3689 3689
47 Belgium 27441 G 3689 3689
48 Belgium 27442 C T 3689 3688 Leu17Phe
49 Belgium 27443 T 3689 3689
50 Belgium 27444 T 3689 3689
51 Belgium 27445 T 3689 3689
52 Belgium 27446 A 3689 3689
53 Belgium 27447 T 3689 3689
54 Belgium 27448 C 3689 3689
55 Belgium 27449 A 3689 3689
56 Belgium 27450 C 3689 3689
57 Belgium 27451 T 3689 3689
58 Belgium 27452 A 3689 3689
59 Belgium 27453 C 3689 3689
60 Belgium 27454 C 3689 3689
61 Belgium 27455 A 3689 3689
62 Belgium 27456 A 3689 3689
63 Belgium 27457 G 3689 3689
64 Belgium 27458 A 3689 3689
65 Belgium 27459 G A 3689 3688 Glu22Glu
66 Belgium 27460 T 3690 3690
67 Belgium 27461 G T 3690 3689 Cys23Phe
68 Belgium 27462 T 3690 3690
69 Belgium 27463 G T,A 3690 3666 Val24Phe-p.Val24Ile
70 Belgium 27464 T 3690 3690
71 Belgium 27465 T 3690 3690
72 Belgium 27466 A 3690 3690
73 Belgium 27467 G 3690 3690
74 Belgium 27468 A 3690 3690
75 Belgium 27469 G A 3690 3689 Gly26Ser
76 Belgium 27470 G 3690 3690
77 Belgium 27471 T 3690 3690
78 Belgium 27472 A 3693 3693
79 Belgium 27473 C A 3693 3692 Thr27Lys
80 Belgium 27474 A 3693 3693
81 Belgium 27475 A 3693 3693
82 Belgium 27476 C T 3693 3690 Thr28Ile
83 Belgium 27477 A 3693 3693
84 Belgium 27478 G T 3693 3691 Val29Leu
85 Belgium 27479 T C 3693 3692 Val29Ala
86 Belgium 27480 A 3693 3693
87 Belgium 27481 C 3693 3693
88 Belgium 27482 T 3693 3693
89 Belgium 27483 T 3693 3693
90 Belgium 27484 T C 3693 3689 Leu31Leu
91 Belgium 27485 T 3693 3691
92 Belgium 27486 A 3693 3693
93 Belgium 27487 A 3693 3693
94 Belgium 27488 A 3693 3693
95 Belgium 27489 A 3693 3693
96 Belgium 27490 G A 3693 3690 Glu33Lys
97 Belgium 27491 A 3693 3693
98 Belgium 27492 A 3693 3693
99 Belgium 27493 C T 3693 3692 Pro34Ser
100 Belgium 27494 C T 3693 3689 Pro34Leu
101 Belgium 27495 T 3692 3692
102 Belgium 27496 T 3692 3692
103 Belgium 27497 G 3692 3692
104 Belgium 27498 C 3692 3692
105 Belgium 27499 T 3692 3692
106 Belgium 27500 C 3692 3692
107 Belgium 27501 T 3692 3692
108 Belgium 27502 T 3692 3692
109 Belgium 27503 C T 3692 3691 Ser37Phe
110 Belgium 27504 T 3692 3692
111 Belgium 27505 G 3691 3691
112 Belgium 27506 G 3691 3691
113 Belgium 27507 A 3691 3691
114 Belgium 27508 A 3691 3691
115 Belgium 27509 C T 3691 3687 Thr39Ile
116 Belgium 27510 A 3691 3691
117 Belgium 27511 T 3691 3691
118 Belgium 27512 A 3624 3616
119 Belgium 27513 C T 3624 3613 Tyr40Tyr
120 Belgium 27514 G A 3622 3613 Glu41Lys
121 Belgium 27515 A 3622 3614
122 Belgium 27516 G 3622 3613
123 Belgium 27517 G 3622 3615
124 Belgium 27518 G 3622 3615
125 Belgium 27519 C 3622 3615
126 Belgium 27520 A 3621 3614
127 Belgium 27521 A 3620 3613
128 Belgium 27522 T 3618 3611
129 Belgium 27523 T C 3617 3607 Ser44Pro
130 Belgium 27524 C 3617 3610
131 Belgium 27525 A 3617 3610
132 Belgium 27526 C T 3617 3608 Pro45Ser
133 Belgium 27527 C T 3617 3607 Pro45Leu
134 Belgium 27528 A 3617 3610
135 Belgium 27529 T 3617 3610
136 Belgium 27530 T 3617 3610
137 Belgium 27531 T 3617 3610
138 Belgium 27532 C T 3617 3608 His47Tyr
139 Belgium 27533 A 3617 3610
140 Belgium 27534 T 3616 3612
141 Belgium 27535 C 3616 3612
142 Belgium 27536 C 3616 3613
143 Belgium 27537 T C 3616 3612 Pro48Pro
144 Belgium 27538 C 3616 3613
145 Belgium 27539 T 3616 3613
146 Belgium 27540 A 3616 3614
147 Belgium 27541 G T 3616 3611 Ala50Ser
148 Belgium 27542 C 3616 3614
149 Belgium 27543 T 3616 3614
150 Belgium 27544 G T 3616 3611 Asp51Tyr
151 Belgium 27545 A 3616 3615
152 Belgium 27546 T 3616 3615
153 Belgium 27547 A 3616 3616
154 Belgium 27548 A 3616 3616
155 Belgium 27549 C T 3616 3614 Asn52Asn
156 Belgium 27550 A 3616 3616
157 Belgium 27551 A 3616 3616
158 Belgium 27552 A 3616 3616
159 Belgium 27553 T 3615 3615
160 Belgium 27554 T 3615 3615
161 Belgium 27555 T 3615 3615
162 Belgium 27556 G 3615 3615
163 Belgium 27557 C A 3615 3613 Ala55Glu
164 Belgium 27558 A 3615 3614
165 Belgium 27559 C 3615 3614
166 Belgium 27560 T 3615 3614
167 Belgium 27561 G T 3615 3613 Leu56Leu
168 Belgium 27562 A C 3615 3612 Thr57Pro
169 Belgium 27563 C 3615 3614
170 Belgium 27564 T 3615 3613
171 Belgium 27565 T 3614 3612
172 Belgium 27566 G 3614 3613
173 Belgium 27567 C 3613 3612
174 Belgium 27568 T 3614 3612
175 Belgium 27569 T 3614 3610
176 Belgium 27570 T 3614 3610
177 Belgium 27571 A 3614 3610
178 Belgium 27572 G 3614 3611
179 Belgium 27573 C 3614 3610
180 Belgium 27574 A 3614 3610
181 Belgium 27575 C T 3614 3608 Thr61Ile
182 Belgium 27576 T C 3614 3605 Thr61Thr
183 Belgium 27577 C T 3614 3603 Gln62*
184 Belgium 27578 A 3614 3610
185 Belgium 27579 A G 3614 3605 Gln62Gln
186 Belgium 27580 T 3614 3610
187 Belgium 27581 T 3614 3611
188 Belgium 27582 T 3614 3611
189 Belgium 27583 G 3614 3612
190 Belgium 27584 C 3614 3612
191 Belgium 27585 T C 3614 3609 Ala64Ala
192 Belgium 27586 T 3614 3611
193 Belgium 27587 T 3614 3612
194 Belgium 27588 T 3614 3610
195 Belgium 27589 G 3614 3611
196 Belgium 27590 C 3614 3612
197 Belgium 27591 T 3614 3613
198 Belgium 27592 T 3614 3613
199 Belgium 27593 G 3614 3614
200 Belgium 27594 T 3614 3614
201 Belgium 27595 C 3614 3613
202 Belgium 27596 C 3614 3614
203 Belgium 27597 T 3614 3614
204 Belgium 27598 G 3614 3614
205 Belgium 27599 A 3614 3614
206 Belgium 27600 C T 3614 3609 Asp69Asp
207 Belgium 27601 G 3614 3614
208 Belgium 27602 G 3614 3614
209 Belgium 27603 C T 3614 3613 Gly70Gly
210 Belgium 27604 G A 3614 3613 Val71Ile
211 Belgium 27605 T C 3614 3613 Val71Ala
212 Belgium 27606 A 3614 3612
213 Belgium 27607 A 3612 3612
214 Belgium 27608 A 3612 3612
215 Belgium 27609 A C 3612 3610 Lys72Asn
216 Belgium 27610 C 3612 3611
217 Belgium 27611 A 3612 3611
218 Belgium 27612 C 3612 3611
219 Belgium 27613 G A 3612 3610 Val74Ile
220 Belgium 27614 T 3612 3611
221 Belgium 27615 C 3612 3612
222 Belgium 27616 T 3612 3612
223 Belgium 27617 A 3612 3612
224 Belgium 27618 T C 3612 3611 Tyr75Tyr
225 Belgium 27619 C 3612 3612
226 Belgium 27620 A 3612 3611
227 Belgium 27621 G T 3612 3602 Gln76His
228 Belgium 27622 T 3612 3611
229 Belgium 27623 T 3612 3612
230 Belgium 27624 A 3612 3612
231 Belgium 27625 C 3612 3611
232 Belgium 27626 G 3612 3612
233 Belgium 27627 T 3612 3612
234 Belgium 27628 G 3612 3612
235 Belgium 27629 C 3613 3613
236 Belgium 27630 C 3613 3613
237 Belgium 27631 A C 3613 3608 Arg80Arg
238 Belgium 27632 G T 3613 3605 Arg80Ile
239 Belgium 27633 A 3613 3612
240 Belgium 27634 T 3614 3613
241 Belgium 27635 C 3614 3614
242 Belgium 27636 A 3614 3614
243 Belgium 27637 G 3614 3614
244 Belgium 27638 T 3613 3613
245 Belgium 27639 T 3613 3613
246 Belgium 27640 T C 3613 3612 Ser83Pro
247 Belgium 27641 C 3613 3613
248 Belgium 27642 A 3613 3613
249 Belgium 27643 C T 3613 3611 Pro84Ser
250 Belgium 27644 C 3613 3613
251 Belgium 27645 T 3613 3613
252 Belgium 27646 A 3613 3613
253 Belgium 27647 A 3613 3613
254 Belgium 27648 A 3613 3613
255 Belgium 27649 C 3613 3613
256 Belgium 27650 T 3613 3613
257 Belgium 27651 G 3613 3613
258 Belgium 27652 T 3613 3613
259 Belgium 27653 T 3613 3613
260 Belgium 27654 C 3613 3613
261 Belgium 27655 A 3613 3613
262 Belgium 27656 T 3613 3613
263 Belgium 27657 C 3613 3613
264 Belgium 27658 A 3613 3612
265 Belgium 27659 G 3613 3612
266 Belgium 27660 A G 3613 3609 Arg89Arg
267 Belgium 27661 C 3613 3613
268 Belgium 27662 A 3613 3612
269 Belgium 27663 A 3613 3613
270 Belgium 27664 G 3613 3613
271 Belgium 27665 A 3613 3613
272 Belgium 27666 G 3613 3613
273 Belgium 27667 G 3613 3613
274 Belgium 27668 A 3613 3612
275 Belgium 27669 A 3613 3613
276 Belgium 27670 G T 3613 3612 Val93Phe
277 Belgium 27671 T 3613 3613
278 Belgium 27672 T 3613 3613
279 Belgium 27673 C 3613 3613
280 Belgium 27674 A 3613 3613
281 Belgium 27675 A 3613 3612
282 Belgium 27676 G 3613 3613
283 Belgium 27677 A 3613 3613
284 Belgium 27678 A 3611 3611
285 Belgium 27679 C T 3611 3604 Leu96Phe
286 Belgium 27680 T 3611 3610
287 Belgium 27681 T 3611 3610
288 Belgium 27682 T 3611 3611
289 Belgium 27683 A 3611 3611
290 Belgium 27684 C T 3611 3607 Tyr97Tyr
291 Belgium 27685 T 3611 3610
292 Belgium 27686 C 3611 3610
293 Belgium 27687 T 3611 3611
294 Belgium 27688 C T 3611 3592 Pro99Ser
295 Belgium 27689 C T 3611 3609 Pro99Leu
296 Belgium 27690 A 3611 3611
297 Belgium 27691 A 3611 3610
298 Belgium 27692 T 3611 3609
299 Belgium 27693 T A 3611 3609 Ile100Ile
300 Belgium 27694 T 3602 3602
301 Belgium 27695 T 3602 3602
302 Belgium 27696 T 3602 3602
303 Belgium 27697 C 3602 3600
304 Belgium 27698 T 3602 3599
305 Belgium 27699 T 3602 3599
306 Belgium 27700 A 3602 3599
307 Belgium 27701 T 3602 3602
308 Belgium 27702 T 3602 3602
309 Belgium 27703 G T 3602 3599 Val104Phe
310 Belgium 27704 T 3602 3602
311 Belgium 27705 T 3602 3602
312 Belgium 27706 G T 3602 3590 Ala105Ser
313 Belgium 27707 C 3602 3601
314 Belgium 27708 G 3602 3602
315 Belgium 27709 G 3602 3602
316 Belgium 27710 C 3602 3602
317 Belgium 27711 A 3602 3601
318 Belgium 27712 A 3602 3602
319 Belgium 27713 T 3602 3602
320 Belgium 27714 A 3602 3602
321 Belgium 27715 G T 3602 3601 Val108Leu
322 Belgium 27716 T 3602 3602
323 Belgium 27717 G 3602 3602
324 Belgium 27718 T 3602 3602
325 Belgium 27719 T 3602 3602
326 Belgium 27720 T 3602 3602
327 Belgium 27721 A 3602 3602
328 Belgium 27722 T C 3602 3600 Ile110Thr
329 Belgium 27723 A 3602 3602
330 Belgium 27724 A 3602 3602
331 Belgium 27725 C 3602 3602
332 Belgium 27726 A 3602 3602
333 Belgium 27727 C 3602 3601
334 Belgium 27728 T 3602 3601
335 Belgium 27729 T 3602 3601
336 Belgium 27730 T 3602 3602
337 Belgium 27731 G 3602 3602
338 Belgium 27732 C T 3602 3601 Cys113Cys
339 Belgium 27733 T 3602 3601
340 Belgium 27734 T 3602 3602
341 Belgium 27735 C 3602 3601
342 Belgium 27736 A 3602 3601
343 Belgium 27737 C T 3602 3595 Thr115Ile
344 Belgium 27738 A 3602 3602
345 Belgium 27739 C T 3602 3599 Leu116Phe
346 Belgium 27740 T 3602 3601
347 Belgium 27741 C T 3602 3601 Leu116Leu
348 Belgium 27742 A 3602 3600
349 Belgium 27743 A 3602 3601
350 Belgium 27744 A 3602 3602
351 Belgium 27745 A 3602 3602
352 Belgium 27746 G 3602 3602
353 Belgium 27747 A 3602 3601
354 Belgium 27748 A 3602 3602
355 Belgium 27749 A 3602 3602
356 Belgium 27750 G 3602 3602
357 Belgium 27751 A 3602 3602
358 Belgium 27752 C 3601 3601
359 Belgium 27753 A 3601 3601
360 Belgium 27754 G T 3601 3595 Glu121*
361 Belgium 27755 A 3601 3601
362 Belgium 27756 A G 3601 3600 -p.Met1?
363 Belgium 27757 T 3601 3601
364 Belgium 27758 G 3601 3601
365 Belgium 27759 A 3601 3601