National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                       1              
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24         1                         1  
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Belarus 27394 A 34 34
1 Belarus 27395 T 34 34
2 Belarus 27396 G 34 34
3 Belarus 27397 A 34 34
4 Belarus 27398 A 34 34
5 Belarus 27399 A 34 34
6 Belarus 27400 A 34 34
7 Belarus 27401 T 34 34
8 Belarus 27402 T 34 34
9 Belarus 27403 A 34 34
10 Belarus 27404 T 34 34
11 Belarus 27405 T 34 34
12 Belarus 27406 C 34 34
13 Belarus 27407 T 34 34
14 Belarus 27408 T 34 34
15 Belarus 27409 T 34 34
16 Belarus 27410 T 34 34
17 Belarus 27411 C 34 34
18 Belarus 27412 T 34 34
19 Belarus 27413 T 34 34
20 Belarus 27414 G 34 34
21 Belarus 27415 G 34 34
22 Belarus 27416 C 34 34
23 Belarus 27417 A 34 34
24 Belarus 27418 C 34 34
25 Belarus 27419 T 34 34
26 Belarus 27420 G 34 34
27 Belarus 27421 A 34 34
28 Belarus 27422 T 34 34
29 Belarus 27423 A 34 34
30 Belarus 27424 A 34 34
31 Belarus 27425 C 34 34
32 Belarus 27426 A 34 34
33 Belarus 27427 C 34 34
34 Belarus 27428 T 34 34
35 Belarus 27429 C 34 34
36 Belarus 27430 G 34 34
37 Belarus 27431 C 34 34
38 Belarus 27432 T 34 34
39 Belarus 27433 A 34 34
40 Belarus 27434 C 34 34
41 Belarus 27435 T 34 34
42 Belarus 27436 T 34 34
43 Belarus 27437 G 34 34
44 Belarus 27438 T 34 34
45 Belarus 27439 G 34 34
46 Belarus 27440 A 34 34
47 Belarus 27441 G 34 34
48 Belarus 27442 C 34 34
49 Belarus 27443 T 34 34
50 Belarus 27444 T 34 34
51 Belarus 27445 T 34 34
52 Belarus 27446 A 34 34
53 Belarus 27447 T 34 34
54 Belarus 27448 C 34 34
55 Belarus 27449 A 34 34
56 Belarus 27450 C 34 34
57 Belarus 27451 T 34 34
58 Belarus 27452 A 34 34
59 Belarus 27453 C 34 34
60 Belarus 27454 C 34 34
61 Belarus 27455 A 34 34
62 Belarus 27456 A 34 34
63 Belarus 27457 G 34 34
64 Belarus 27458 A 34 34
65 Belarus 27459 G 34 34
66 Belarus 27460 T 34 34
67 Belarus 27461 G 34 34
68 Belarus 27462 T 34 34
69 Belarus 27463 G 34 34
70 Belarus 27464 T 34 34
71 Belarus 27465 T 34 34
72 Belarus 27466 A 34 34
73 Belarus 27467 G 34 34
74 Belarus 27468 A 34 34
75 Belarus 27469 G 34 34
76 Belarus 27470 G 34 34
77 Belarus 27471 T 34 34
78 Belarus 27472 A 34 34
79 Belarus 27473 C 34 34
80 Belarus 27474 A 34 34
81 Belarus 27475 A 34 34
82 Belarus 27476 C 34 34
83 Belarus 27477 A 34 34
84 Belarus 27478 G 34 34
85 Belarus 27479 T 34 34
86 Belarus 27480 A 34 34
87 Belarus 27481 C 34 34
88 Belarus 27482 T 34 34
89 Belarus 27483 T 34 34
90 Belarus 27484 T 34 34
91 Belarus 27485 T 34 34
92 Belarus 27486 A 34 34
93 Belarus 27487 A 34 34
94 Belarus 27488 A 34 34
95 Belarus 27489 A 34 34
96 Belarus 27490 G 34 34
97 Belarus 27491 A 34 34
98 Belarus 27492 A 34 34
99 Belarus 27493 C 34 34
100 Belarus 27494 C 34 34
101 Belarus 27495 T 34 34
102 Belarus 27496 T 34 34
103 Belarus 27497 G 34 34
104 Belarus 27498 C 34 34
105 Belarus 27499 T 34 34
106 Belarus 27500 C 34 34
107 Belarus 27501 T 34 34
108 Belarus 27502 T 34 34
109 Belarus 27503 C 34 34
110 Belarus 27504 T 34 34
111 Belarus 27505 G 34 34
112 Belarus 27506 G 34 34
113 Belarus 27507 A 34 34
114 Belarus 27508 A 34 34
115 Belarus 27509 C 34 34
116 Belarus 27510 A 34 34
117 Belarus 27511 T 34 34
118 Belarus 27512 A 34 34
119 Belarus 27513 C 34 34
120 Belarus 27514 G 34 34
121 Belarus 27515 A 34 34
122 Belarus 27516 G 34 34
123 Belarus 27517 G 34 34
124 Belarus 27518 G 34 34
125 Belarus 27519 C 34 34
126 Belarus 27520 A 34 34
127 Belarus 27521 A 34 34
128 Belarus 27522 T C 34 33 Asn43Asn
129 Belarus 27523 T 34 34
130 Belarus 27524 C 34 34
131 Belarus 27525 A 34 34
132 Belarus 27526 C 34 34
133 Belarus 27527 C 34 34
134 Belarus 27528 A 34 34
135 Belarus 27529 T 34 34
136 Belarus 27530 T 34 34
137 Belarus 27531 T 34 34
138 Belarus 27532 C 34 34
139 Belarus 27533 A 34 34
140 Belarus 27534 T 34 34
141 Belarus 27535 C 34 34
142 Belarus 27536 C 34 34
143 Belarus 27537 T 34 34
144 Belarus 27538 C 34 34
145 Belarus 27539 T 34 34
146 Belarus 27540 A 34 34
147 Belarus 27541 G 34 34
148 Belarus 27542 C 34 34
149 Belarus 27543 T 34 34
150 Belarus 27544 G 34 34
151 Belarus 27545 A 34 34
152 Belarus 27546 T 34 34
153 Belarus 27547 A 34 34
154 Belarus 27548 A 34 34
155 Belarus 27549 C 34 34
156 Belarus 27550 A 34 34
157 Belarus 27551 A 34 34
158 Belarus 27552 A 34 34
159 Belarus 27553 T 34 34
160 Belarus 27554 T 34 34
161 Belarus 27555 T 34 34
162 Belarus 27556 G 34 34
163 Belarus 27557 C 34 34
164 Belarus 27558 A 34 34
165 Belarus 27559 C 34 34
166 Belarus 27560 T 34 34
167 Belarus 27561 G 34 34
168 Belarus 27562 A 34 34
169 Belarus 27563 C 34 34
170 Belarus 27564 T 34 34
171 Belarus 27565 T 34 34
172 Belarus 27566 G 34 34
173 Belarus 27567 C 34 34
174 Belarus 27568 T 34 34
175 Belarus 27569 T 34 34
176 Belarus 27570 T 34 34
177 Belarus 27571 A 34 34
178 Belarus 27572 G 34 34
179 Belarus 27573 C 34 34
180 Belarus 27574 A 33 33
181 Belarus 27575 C 33 33
182 Belarus 27576 T 33 33
183 Belarus 27577 C 33 33
184 Belarus 27578 A 33 33
185 Belarus 27579 A 33 33
186 Belarus 27580 T 33 33
187 Belarus 27581 T 33 33
188 Belarus 27582 T 34 34
189 Belarus 27583 G 34 34
190 Belarus 27584 C 34 34
191 Belarus 27585 T 34 34
192 Belarus 27586 T 34 34
193 Belarus 27587 T 34 34
194 Belarus 27588 T 34 34
195 Belarus 27589 G 34 34
196 Belarus 27590 C 34 34
197 Belarus 27591 T 34 34
198 Belarus 27592 T 34 34
199 Belarus 27593 G 34 34
200 Belarus 27594 T 34 34
201 Belarus 27595 C 34 34
202 Belarus 27596 C 34 34
203 Belarus 27597 T 34 34
204 Belarus 27598 G 34 34
205 Belarus 27599 A 34 34
206 Belarus 27600 C 34 34
207 Belarus 27601 G 34 34
208 Belarus 27602 G 34 34
209 Belarus 27603 C 34 34
210 Belarus 27604 G 34 34
211 Belarus 27605 T 34 34
212 Belarus 27606 A 34 34
213 Belarus 27607 A 34 34
214 Belarus 27608 A 34 34
215 Belarus 27609 A 34 34
216 Belarus 27610 C 34 34
217 Belarus 27611 A 34 34
218 Belarus 27612 C 34 34
219 Belarus 27613 G 34 34
220 Belarus 27614 T 34 34
221 Belarus 27615 C 34 34
222 Belarus 27616 T 34 34
223 Belarus 27617 A 34 34
224 Belarus 27618 T 34 34
225 Belarus 27619 C 34 34
226 Belarus 27620 A 34 34
227 Belarus 27621 G 34 34
228 Belarus 27622 T 34 34
229 Belarus 27623 T 34 34
230 Belarus 27624 A 34 34
231 Belarus 27625 C 34 34
232 Belarus 27626 G 34 34
233 Belarus 27627 T 34 34
234 Belarus 27628 G 34 34
235 Belarus 27629 C 34 34
236 Belarus 27630 C 34 34
237 Belarus 27631 A 34 34
238 Belarus 27632 G 34 34
239 Belarus 27633 A 34 34
240 Belarus 27634 T 35 35
241 Belarus 27635 C 35 35
242 Belarus 27636 A 35 35
243 Belarus 27637 G 35 35
244 Belarus 27638 T 35 35
245 Belarus 27639 T C 35 34 Val82Val
246 Belarus 27640 T 35 35
247 Belarus 27641 C 35 35
248 Belarus 27642 A 35 35
249 Belarus 27643 C 35 35
250 Belarus 27644 C 35 35
251 Belarus 27645 T 35 35
252 Belarus 27646 A 35 35
253 Belarus 27647 A 35 35
254 Belarus 27648 A 35 35
255 Belarus 27649 C 35 35
256 Belarus 27650 T 35 35
257 Belarus 27651 G 35 35
258 Belarus 27652 T 35 35
259 Belarus 27653 T 35 35
260 Belarus 27654 C 35 35
261 Belarus 27655 A 35 35
262 Belarus 27656 T 35 35
263 Belarus 27657 C 35 35
264 Belarus 27658 A 35 35
265 Belarus 27659 G 35 35
266 Belarus 27660 A 35 35
267 Belarus 27661 C 35 35
268 Belarus 27662 A 35 35
269 Belarus 27663 A 35 35
270 Belarus 27664 G 35 35
271 Belarus 27665 A 35 35
272 Belarus 27666 G 35 35
273 Belarus 27667 G 35 35
274 Belarus 27668 A 35 35
275 Belarus 27669 A 35 35
276 Belarus 27670 G T 35 31 Val93Phe
277 Belarus 27671 T 35 35
278 Belarus 27672 T 35 35
279 Belarus 27673 C 35 35
280 Belarus 27674 A 35 35
281 Belarus 27675 A 35 35
282 Belarus 27676 G 35 35
283 Belarus 27677 A 35 35
284 Belarus 27678 A 35 35
285 Belarus 27679 C 35 35
286 Belarus 27680 T 35 35
287 Belarus 27681 T 35 35
288 Belarus 27682 T 35 35
289 Belarus 27683 A 35 35
290 Belarus 27684 C 35 35
291 Belarus 27685 T 35 35
292 Belarus 27686 C 35 35
293 Belarus 27687 T 35 35
294 Belarus 27688 C 35 35
295 Belarus 27689 C 35 35
296 Belarus 27690 A 35 35
297 Belarus 27691 A 35 35
298 Belarus 27692 T 35 35
299 Belarus 27693 T 35 35
300 Belarus 27694 T 35 35
301 Belarus 27695 T 35 35
302 Belarus 27696 T 35 35
303 Belarus 27697 C 35 35
304 Belarus 27698 T 35 35
305 Belarus 27699 T 35 35
306 Belarus 27700 A 35 35
307 Belarus 27701 T 35 35
308 Belarus 27702 T 35 35
309 Belarus 27703 G 35 35
310 Belarus 27704 T 35 35
311 Belarus 27705 T 35 35
312 Belarus 27706 G 35 35
313 Belarus 27707 C 35 35
314 Belarus 27708 G 35 35
315 Belarus 27709 G 35 35
316 Belarus 27710 C 35 35
317 Belarus 27711 A 35 35
318 Belarus 27712 A 35 35
319 Belarus 27713 T 35 35
320 Belarus 27714 A 35 35
321 Belarus 27715 G 35 35
322 Belarus 27716 T 35 35
323 Belarus 27717 G 35 35
324 Belarus 27718 T 35 35
325 Belarus 27719 T 35 35
326 Belarus 27720 T 35 35
327 Belarus 27721 A 35 35
328 Belarus 27722 T 35 35
329 Belarus 27723 A 35 35
330 Belarus 27724 A 35 35
331 Belarus 27725 C 35 35
332 Belarus 27726 A 35 35
333 Belarus 27727 C 35 35
334 Belarus 27728 T 35 35
335 Belarus 27729 T 35 35
336 Belarus 27730 T 35 35
337 Belarus 27731 G 35 35
338 Belarus 27732 C 35 35
339 Belarus 27733 T 35 35
340 Belarus 27734 T 35 35
341 Belarus 27735 C 35 35
342 Belarus 27736 A 35 35
343 Belarus 27737 C 35 35
344 Belarus 27738 A 35 35
345 Belarus 27739 C 35 35
346 Belarus 27740 T 35 35
347 Belarus 27741 C 35 35
348 Belarus 27742 A 35 35
349 Belarus 27743 A 35 35
350 Belarus 27744 A 35 35
351 Belarus 27745 A 35 35
352 Belarus 27746 G 35 35
353 Belarus 27747 A 35 35
354 Belarus 27748 A 35 35
355 Belarus 27749 A 35 35
356 Belarus 27750 G 35 35
357 Belarus 27751 A 35 35
358 Belarus 27752 C 35 35
359 Belarus 27753 A 35 35
360 Belarus 27754 G 35 35
361 Belarus 27755 A 35 35
362 Belarus 27756 A 35 35
363 Belarus 27757 T 35 35
364 Belarus 27758 G 35 35
365 Belarus 27759 A 35 35