National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                 1    
C     18                                      
D     6                                      
E     24                 1                    
F     30                                      
G     12                                      
H     9                                     1
I     25               1   1                  
K     21                                      
L     45         1         1                  
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15               1                      
S     21                         1            
T     30               3                      
V     24         1                            
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Bahrain 27394 A 149 149
1 Bahrain 27395 T 149 149
2 Bahrain 27396 G 149 149
3 Bahrain 27397 A 149 149
4 Bahrain 27398 A 149 149
5 Bahrain 27399 A 149 149
6 Bahrain 27400 A 149 149
7 Bahrain 27401 T 149 149
8 Bahrain 27402 T 149 149
9 Bahrain 27403 A 149 149
10 Bahrain 27404 T 149 149
11 Bahrain 27405 T 149 149
12 Bahrain 27406 C 149 149
13 Bahrain 27407 T 149 149
14 Bahrain 27408 T 149 149
15 Bahrain 27409 T 149 149
16 Bahrain 27410 T 149 149
17 Bahrain 27411 C 149 149
18 Bahrain 27412 T 149 149
19 Bahrain 27413 T 149 149
20 Bahrain 27414 G 149 149
21 Bahrain 27415 G 149 149
22 Bahrain 27416 C 149 149
23 Bahrain 27417 A 149 149
24 Bahrain 27418 C 149 149
25 Bahrain 27419 T 149 149
26 Bahrain 27420 G 149 149
27 Bahrain 27421 A 149 149
28 Bahrain 27422 T 149 149
29 Bahrain 27423 A 149 149
30 Bahrain 27424 A 149 149
31 Bahrain 27425 C T 149 148 Thr11Ile
32 Bahrain 27426 A 149 149
33 Bahrain 27427 C 149 149
34 Bahrain 27428 T 149 149
35 Bahrain 27429 C 149 149
36 Bahrain 27430 G A 149 148 Ala13Thr
37 Bahrain 27431 C 149 149
38 Bahrain 27432 T 149 149
39 Bahrain 27433 A 149 149
40 Bahrain 27434 C T 149 147 Thr14Ile
41 Bahrain 27435 T 149 149
42 Bahrain 27436 T 149 149
43 Bahrain 27437 G 149 149
44 Bahrain 27438 T 149 149
45 Bahrain 27439 G 149 149
46 Bahrain 27440 A 149 149
47 Bahrain 27441 G 149 149
48 Bahrain 27442 C 149 149
49 Bahrain 27443 T 149 149
50 Bahrain 27444 T 149 149
51 Bahrain 27445 T 149 149
52 Bahrain 27446 A 149 149
53 Bahrain 27447 T 149 149
54 Bahrain 27448 C 149 149
55 Bahrain 27449 A 149 149
56 Bahrain 27450 C 149 149
57 Bahrain 27451 T 149 149
58 Bahrain 27452 A 149 149
59 Bahrain 27453 C 149 149
60 Bahrain 27454 C 149 149
61 Bahrain 27455 A 149 149
62 Bahrain 27456 A 149 149
63 Bahrain 27457 G 149 149
64 Bahrain 27458 A 149 149
65 Bahrain 27459 G 149 149
66 Bahrain 27460 T 149 149
67 Bahrain 27461 G 149 149
68 Bahrain 27462 T 149 149
69 Bahrain 27463 G 149 149
70 Bahrain 27464 T 149 149
71 Bahrain 27465 T 149 149
72 Bahrain 27466 A 149 149
73 Bahrain 27467 G 149 149
74 Bahrain 27468 A 149 149
75 Bahrain 27469 G 149 149
76 Bahrain 27470 G 149 149
77 Bahrain 27471 T 149 149
78 Bahrain 27472 A 149 149
79 Bahrain 27473 C 149 149
80 Bahrain 27474 A 149 149
81 Bahrain 27475 A 149 149
82 Bahrain 27476 C T 149 148 Thr28Ile
83 Bahrain 27477 A 149 149
84 Bahrain 27478 G 149 149
85 Bahrain 27479 T 149 149
86 Bahrain 27480 A 149 149
87 Bahrain 27481 C 149 149
88 Bahrain 27482 T 149 149
89 Bahrain 27483 T 149 149
90 Bahrain 27484 T 149 149
91 Bahrain 27485 T 149 149
92 Bahrain 27486 A 149 149
93 Bahrain 27487 A 149 149
94 Bahrain 27488 A 149 149
95 Bahrain 27489 A 149 149
96 Bahrain 27490 G A 149 148 Glu33Lys
97 Bahrain 27491 A 149 149
98 Bahrain 27492 A 149 149
99 Bahrain 27493 C 149 149
100 Bahrain 27494 C 149 149
101 Bahrain 27495 T 149 149
102 Bahrain 27496 T 149 149
103 Bahrain 27497 G 149 149
104 Bahrain 27498 C 149 149
105 Bahrain 27499 T C 149 148 Ser36Pro
106 Bahrain 27500 C 149 149
107 Bahrain 27501 T 149 149
108 Bahrain 27502 T 149 149
109 Bahrain 27503 C 149 149
110 Bahrain 27504 T 149 149
111 Bahrain 27505 G 149 149
112 Bahrain 27506 G 149 149
113 Bahrain 27507 A 149 149
114 Bahrain 27508 A 149 149
115 Bahrain 27509 C 149 149
116 Bahrain 27510 A 149 149
117 Bahrain 27511 T 149 149
118 Bahrain 27512 A 149 149
119 Bahrain 27513 C 149 149
120 Bahrain 27514 G 149 149
121 Bahrain 27515 A 149 149
122 Bahrain 27516 G 149 149
123 Bahrain 27517 G 149 149
124 Bahrain 27518 G 149 149
125 Bahrain 27519 C 149 149
126 Bahrain 27520 A 149 149
127 Bahrain 27521 A 149 149
128 Bahrain 27522 T 149 149
129 Bahrain 27523 T 149 149
130 Bahrain 27524 C 149 149
131 Bahrain 27525 A 149 149
132 Bahrain 27526 C 149 149
133 Bahrain 27527 C 149 149
134 Bahrain 27528 A 149 149
135 Bahrain 27529 T 149 149
136 Bahrain 27530 T 149 149
137 Bahrain 27531 T 149 149
138 Bahrain 27532 C T 149 146 His47Tyr
139 Bahrain 27533 A 149 149
140 Bahrain 27534 T 149 149
141 Bahrain 27535 C 149 149
142 Bahrain 27536 C 149 149
143 Bahrain 27537 T 149 149
144 Bahrain 27538 C 149 149
145 Bahrain 27539 T 149 149
146 Bahrain 27540 A 149 149
147 Bahrain 27541 G 149 149
148 Bahrain 27542 C 149 149
149 Bahrain 27543 T 149 149
150 Bahrain 27544 G 149 149
151 Bahrain 27545 A 149 149
152 Bahrain 27546 T 149 149
153 Bahrain 27547 A 149 149
154 Bahrain 27548 A 149 149
155 Bahrain 27549 C 149 149
156 Bahrain 27550 A 149 149
157 Bahrain 27551 A 149 149
158 Bahrain 27552 A 149 149
159 Bahrain 27553 T 149 149
160 Bahrain 27554 T 149 149
161 Bahrain 27555 T 149 149
162 Bahrain 27556 G 149 149
163 Bahrain 27557 C 149 149
164 Bahrain 27558 A 149 149
165 Bahrain 27559 C 149 149
166 Bahrain 27560 T 149 149
167 Bahrain 27561 G 149 149
168 Bahrain 27562 A 149 149
169 Bahrain 27563 C 149 149
170 Bahrain 27564 T 149 149
171 Bahrain 27565 T 149 148
172 Bahrain 27566 G 149 149
173 Bahrain 27567 C 149 149
174 Bahrain 27568 T 149 149
175 Bahrain 27569 T 149 149
176 Bahrain 27570 T 149 149
177 Bahrain 27571 A 149 149
178 Bahrain 27572 G 149 149
179 Bahrain 27573 C 149 149
180 Bahrain 27574 A 149 149
181 Bahrain 27575 C 149 149
182 Bahrain 27576 T 149 149
183 Bahrain 27577 C 149 149
184 Bahrain 27578 A 149 149
185 Bahrain 27579 A 149 149
186 Bahrain 27580 T 149 149
187 Bahrain 27581 T 149 149
188 Bahrain 27582 T 149 149
189 Bahrain 27583 G 149 149
190 Bahrain 27584 C 149 149
191 Bahrain 27585 T 149 149
192 Bahrain 27586 T 149 149
193 Bahrain 27587 T 149 149
194 Bahrain 27588 T 149 149
195 Bahrain 27589 G 149 149
196 Bahrain 27590 C 149 149
197 Bahrain 27591 T 149 149
198 Bahrain 27592 T 149 149
199 Bahrain 27593 G 149 149
200 Bahrain 27594 T 149 149
201 Bahrain 27595 C 149 149
202 Bahrain 27596 C 149 149
203 Bahrain 27597 T 149 149
204 Bahrain 27598 G 149 149
205 Bahrain 27599 A 149 149
206 Bahrain 27600 C 149 149
207 Bahrain 27601 G 149 149
208 Bahrain 27602 G 149 149
209 Bahrain 27603 C 149 149
210 Bahrain 27604 G 149 149
211 Bahrain 27605 T 149 149
212 Bahrain 27606 A 149 149
213 Bahrain 27607 A 149 149
214 Bahrain 27608 A 149 149
215 Bahrain 27609 A 149 149
216 Bahrain 27610 C 149 149
217 Bahrain 27611 A 149 149
218 Bahrain 27612 C 149 149
219 Bahrain 27613 G 149 149
220 Bahrain 27614 T 149 149
221 Bahrain 27615 C 149 149
222 Bahrain 27616 T 149 149
223 Bahrain 27617 A 149 149
224 Bahrain 27618 T 149 149
225 Bahrain 27619 C 149 149
226 Bahrain 27620 A 149 149
227 Bahrain 27621 G 149 149
228 Bahrain 27622 T 149 149
229 Bahrain 27623 T 149 149
230 Bahrain 27624 A G 149 148 Leu77Leu
231 Bahrain 27625 C 149 149
232 Bahrain 27626 G 149 149
233 Bahrain 27627 T 149 149
234 Bahrain 27628 G 149 149
235 Bahrain 27629 C 149 149
236 Bahrain 27630 C 149 149
237 Bahrain 27631 A 149 149
238 Bahrain 27632 G 149 149
239 Bahrain 27633 A 149 149
240 Bahrain 27634 T 149 149
241 Bahrain 27635 C 149 149
242 Bahrain 27636 A 149 149
243 Bahrain 27637 G 149 149
244 Bahrain 27638 T 149 149
245 Bahrain 27639 T 149 149
246 Bahrain 27640 T 149 149
247 Bahrain 27641 C 149 149
248 Bahrain 27642 A 149 149
249 Bahrain 27643 C 149 149
250 Bahrain 27644 C 149 149
251 Bahrain 27645 T 149 149
252 Bahrain 27646 A 149 149
253 Bahrain 27647 A 149 149
254 Bahrain 27648 A 149 149
255 Bahrain 27649 C 149 149
256 Bahrain 27650 T 149 149
257 Bahrain 27651 G 149 149
258 Bahrain 27652 T 149 149
259 Bahrain 27653 T 149 149
260 Bahrain 27654 C 149 149
261 Bahrain 27655 A 149 149
262 Bahrain 27656 T 149 149
263 Bahrain 27657 C T 149 148 Ile88Ile
264 Bahrain 27658 A 149 149
265 Bahrain 27659 G 149 149
266 Bahrain 27660 A 149 149
267 Bahrain 27661 C 149 149
268 Bahrain 27662 A 149 149
269 Bahrain 27663 A 149 149
270 Bahrain 27664 G 149 149
271 Bahrain 27665 A 149 149
272 Bahrain 27666 G 149 149
273 Bahrain 27667 G 149 149
274 Bahrain 27668 A 149 149
275 Bahrain 27669 A 149 149
276 Bahrain 27670 G T 149 148 Val93Phe
277 Bahrain 27671 T 149 149
278 Bahrain 27672 T 149 149
279 Bahrain 27673 C 149 149
280 Bahrain 27674 A 149 149
281 Bahrain 27675 A 149 149
282 Bahrain 27676 G 149 149
283 Bahrain 27677 A 149 149
284 Bahrain 27678 A 149 149
285 Bahrain 27679 C T 149 148 Leu96Phe
286 Bahrain 27680 T 149 149
287 Bahrain 27681 T 149 149
288 Bahrain 27682 T 149 149
289 Bahrain 27683 A 149 149
290 Bahrain 27684 C T 149 139 Tyr97Tyr
291 Bahrain 27685 T 149 149
292 Bahrain 27686 C 149 149
293 Bahrain 27687 T 149 149
294 Bahrain 27688 C 149 149
295 Bahrain 27689 C 149 149
296 Bahrain 27690 A 149 149
297 Bahrain 27691 A 149 149
298 Bahrain 27692 T 149 149
299 Bahrain 27693 T 149 149
300 Bahrain 27694 T 149 149
301 Bahrain 27695 T 149 149
302 Bahrain 27696 T 149 149
303 Bahrain 27697 C 149 149
304 Bahrain 27698 T 149 149
305 Bahrain 27699 T 149 149
306 Bahrain 27700 A 149 149
307 Bahrain 27701 T 149 149
308 Bahrain 27702 T 149 149
309 Bahrain 27703 G 149 149
310 Bahrain 27704 T 149 149
311 Bahrain 27705 T 149 149
312 Bahrain 27706 G 149 149
313 Bahrain 27707 C 149 149
314 Bahrain 27708 G 149 149
315 Bahrain 27709 G 149 149
316 Bahrain 27710 C 149 149
317 Bahrain 27711 A 149 149
318 Bahrain 27712 A T 149 148 Ile107Leu
319 Bahrain 27713 T 149 149
320 Bahrain 27714 A 149 149
321 Bahrain 27715 G 149 149
322 Bahrain 27716 T 149 149
323 Bahrain 27717 G 149 149
324 Bahrain 27718 T 149 149
325 Bahrain 27719 T 149 149
326 Bahrain 27720 T 149 149
327 Bahrain 27721 A 149 149
328 Bahrain 27722 T 149 149
329 Bahrain 27723 A 149 149
330 Bahrain 27724 A 149 149
331 Bahrain 27725 C 149 149
332 Bahrain 27726 A 149 149
333 Bahrain 27727 C 149 149
334 Bahrain 27728 T 149 149
335 Bahrain 27729 T 149 149
336 Bahrain 27730 T 149 149
337 Bahrain 27731 G 149 149
338 Bahrain 27732 C 149 149
339 Bahrain 27733 T 149 149
340 Bahrain 27734 T 149 149
341 Bahrain 27735 C 149 149
342 Bahrain 27736 A 149 149
343 Bahrain 27737 C 149 149
344 Bahrain 27738 A 149 149
345 Bahrain 27739 C 149 149
346 Bahrain 27740 T 149 149
347 Bahrain 27741 C 149 149
348 Bahrain 27742 A 149 149
349 Bahrain 27743 A 149 149
350 Bahrain 27744 A 149 149
351 Bahrain 27745 A 149 149
352 Bahrain 27746 G T 149 139 Arg118Ile
353 Bahrain 27747 A 149 149
354 Bahrain 27748 A 149 149
355 Bahrain 27749 A 149 149
356 Bahrain 27750 G 149 149
357 Bahrain 27751 A 149 149
358 Bahrain 27752 C 149 149
359 Bahrain 27753 A 149 149
360 Bahrain 27754 G 149 149
361 Bahrain 27755 A 149 149
362 Bahrain 27756 A 149 149
363 Bahrain 27757 T 149 149
364 Bahrain 27758 G 149 149
365 Bahrain 27759 A 149 149