National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27 4                             2 1 2  
C     18                               1      
D     6     1                                
E     24                                   1  
F     30                   1                  
G 1   12                                   1  
H     9                                     2
I     25               1                 1    
K     21                 1           1        
L     45                         1            
M     6                                      
N     6                                      
P     18                   1           2      
Q 2   15                                      
R     15               1                      
S     21                                      
T     30 1             1                      
V     24         1                            
Y     15                                     1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Austria 27394 A 1337 1337
1 Austria 27395 T 1337 1337
2 Austria 27396 G 1337 1337
3 Austria 27397 A 1337 1337
4 Austria 27398 A 1337 1337
5 Austria 27399 A 1337 1337
6 Austria 27400 A 1337 1337
7 Austria 27401 T C 1337 1335 Ile3Thr
8 Austria 27402 T C 1337 1336 Ile3Ile
9 Austria 27403 A 1337 1337
10 Austria 27404 T 1337 1337
11 Austria 27405 T 1337 1337
12 Austria 27406 C 1337 1337
13 Austria 27407 T 1337 1337
14 Austria 27408 T 1337 1337
15 Austria 27409 T C 1337 1291 Phe6Leu
16 Austria 27410 T 1337 1337
17 Austria 27411 C 1337 1337
18 Austria 27412 T 1337 1337
19 Austria 27413 T 1337 1337
20 Austria 27414 G 1337 1337
21 Austria 27415 G A 1337 1334 Ala8Thr
22 Austria 27416 C 1337 1337
23 Austria 27417 A G 1337 1334 Ala8Ala
24 Austria 27418 C 1337 1337
25 Austria 27419 T 1337 1337
26 Austria 27420 G 1337 1337
27 Austria 27421 A 1337 1337
28 Austria 27422 T 1337 1337
29 Austria 27423 A 1337 1337
30 Austria 27424 A G 1337 1336 Thr11Ala
31 Austria 27425 C 1337 1337
32 Austria 27426 A 1337 1337
33 Austria 27427 C 1337 1337
34 Austria 27428 T C 1337 1336 Leu12Pro
35 Austria 27429 C 1337 1337
36 Austria 27430 G T 1337 1336 Ala13Ser
37 Austria 27431 C T 1337 1335 Ala13Val
38 Austria 27432 T 1337 1337
39 Austria 27433 A 1337 1337
40 Austria 27434 C 1337 1337
41 Austria 27435 T 1337 1337
42 Austria 27436 T 1337 1337
43 Austria 27437 G 1337 1337
44 Austria 27438 T 1337 1337
45 Austria 27439 G 1337 1337
46 Austria 27440 A 1337 1337
47 Austria 27441 G 1337 1337
48 Austria 27442 C 1337 1337
49 Austria 27443 T 1337 1337
50 Austria 27444 T 1337 1337
51 Austria 27445 T 1337 1337
52 Austria 27446 A 1337 1337
53 Austria 27447 T C 1337 1336 Tyr18Tyr
54 Austria 27448 C 1337 1337
55 Austria 27449 A 1337 1337
56 Austria 27450 C 1337 1337
57 Austria 27451 T 1337 1337
58 Austria 27452 A 1337 1337
59 Austria 27453 C 1337 1337
60 Austria 27454 C 1337 1337
61 Austria 27455 A 1337 1337
62 Austria 27456 A 1337 1337
63 Austria 27457 G 1337 1337
64 Austria 27458 A 1337 1337
65 Austria 27459 G 1337 1337
66 Austria 27460 T 1337 1337
67 Austria 27461 G C 1337 1336 Cys23Ser
68 Austria 27462 T 1337 1337
69 Austria 27463 G 1337 1337
70 Austria 27464 T 1337 1337
71 Austria 27465 T 1337 1337
72 Austria 27466 A 1337 1337
73 Austria 27467 G 1337 1337
74 Austria 27468 A 1337 1337
75 Austria 27469 G 1337 1337
76 Austria 27470 G 1337 1337
77 Austria 27471 T 1337 1337
78 Austria 27472 A 1339 1339
79 Austria 27473 C 1339 1339
80 Austria 27474 A 1339 1339
81 Austria 27475 A 1339 1339
82 Austria 27476 C 1339 1339
83 Austria 27477 A 1339 1339
84 Austria 27478 G 1339 1339
85 Austria 27479 T 1339 1339
86 Austria 27480 A 1339 1339
87 Austria 27481 C 1339 1339
88 Austria 27482 T 1339 1339
89 Austria 27483 T 1339 1339
90 Austria 27484 T 1339 1339
91 Austria 27485 T 1339 1339
92 Austria 27486 A 1339 1339
93 Austria 27487 A 1339 1339
94 Austria 27488 A 1339 1339
95 Austria 27489 A 1339 1339
96 Austria 27490 G 1339 1339
97 Austria 27491 A 1339 1339
98 Austria 27492 A 1339 1339
99 Austria 27493 C 1339 1339
100 Austria 27494 C 1339 1339
101 Austria 27495 T 1339 1339
102 Austria 27496 T 1339 1339
103 Austria 27497 G 1339 1339
104 Austria 27498 C 1339 1339
105 Austria 27499 T 1339 1339
106 Austria 27500 C 1339 1339
107 Austria 27501 T 1339 1339
108 Austria 27502 T 1339 1339
109 Austria 27503 C 1339 1339
110 Austria 27504 T 1339 1339
111 Austria 27505 G T 1339 1338 Gly38*
112 Austria 27506 G T 1339 1338 Gly38Val
113 Austria 27507 A 1339 1339
114 Austria 27508 A 1339 1339
115 Austria 27509 C T 1339 1338 Thr39Ile
116 Austria 27510 A 1339 1339
117 Austria 27511 T 1339 1339
118 Austria 27512 A 1317 1302
119 Austria 27513 C 1317 1302
120 Austria 27514 G 1316 1300
121 Austria 27515 A 1316 1301
122 Austria 27516 G 1316 1301
123 Austria 27517 G 1316 1301
124 Austria 27518 G 1316 1301
125 Austria 27519 C 1316 1301
126 Austria 27520 A 1316 1301
127 Austria 27521 A 1316 1301
128 Austria 27522 T 1316 1301
129 Austria 27523 T 1316 1301
130 Austria 27524 C 1316 1301
131 Austria 27525 A 1316 1301
132 Austria 27526 C 1316 1301
133 Austria 27527 C T 1316 1301 Pro45Leu
134 Austria 27528 A 1316 1302
135 Austria 27529 T 1316 1302
136 Austria 27530 T 1315 1301
137 Austria 27531 T 1315 1301
138 Austria 27532 C T 1315 1299 His47Tyr
139 Austria 27533 A 1315 1301
140 Austria 27534 T 1314 1300
141 Austria 27535 C 1314 1300
142 Austria 27536 C 1314 1300
143 Austria 27537 T 1314 1300
144 Austria 27538 C 1314 1300
145 Austria 27539 T 1314 1300
146 Austria 27540 A 1314 1300
147 Austria 27541 G 1314 1300
148 Austria 27542 C 1314 1301
149 Austria 27543 T 1314 1301
150 Austria 27544 G 1314 1301
151 Austria 27545 A 1314 1301
152 Austria 27546 T 1314 1301
153 Austria 27547 A 1314 1301
154 Austria 27548 A 1314 1301
155 Austria 27549 C 1314 1301
156 Austria 27550 A 1314 1301
157 Austria 27551 A 1314 1301
158 Austria 27552 A G 1314 1300 Lys53Lys
159 Austria 27553 T 1313 1300
160 Austria 27554 T 1313 1312
161 Austria 27555 T 1313 1312
162 Austria 27556 G 1312 1311
163 Austria 27557 C 1312 1311
164 Austria 27558 A T 1312 1309 Ala55Ala
165 Austria 27559 C 1312 1311
166 Austria 27560 T 1312 1311
167 Austria 27561 G 1312 1311
168 Austria 27562 A 1312 1311
169 Austria 27563 C 1312 1311
170 Austria 27564 T 1312 1311
171 Austria 27565 T 1312 1311
172 Austria 27566 G 1312 1311
173 Austria 27567 C 1312 1311
174 Austria 27568 T 1312 1311
175 Austria 27569 T 1312 1311
176 Austria 27570 T 1312 1311
177 Austria 27571 A 1312 1311
178 Austria 27572 G 1312 1310
179 Austria 27573 C 1312 1311
180 Austria 27574 A 1312 1311
181 Austria 27575 C 1312 1311
182 Austria 27576 T 1312 1311
183 Austria 27577 C T 1312 1308 Gln62*
184 Austria 27578 A 1312 1311
185 Austria 27579 A 1312 1311
186 Austria 27580 T 1312 1311
187 Austria 27581 T 1312 1311
188 Austria 27582 T 1312 1311
189 Austria 27583 G 1312 1311
190 Austria 27584 C 1312 1312
191 Austria 27585 T C 1312 1311 Ala64Ala
192 Austria 27586 T 1312 1312
193 Austria 27587 T 1312 1312
194 Austria 27588 T 1312 1312
195 Austria 27589 G 1312 1312
196 Austria 27590 C 1312 1312
197 Austria 27591 T 1312 1312
198 Austria 27592 T 1313 1313
199 Austria 27593 G 1313 1313
200 Austria 27594 T 1313 1313
201 Austria 27595 C 1313 1313
202 Austria 27596 C 1313 1313
203 Austria 27597 T 1313 1313
204 Austria 27598 G 1313 1313
205 Austria 27599 A 1313 1313
206 Austria 27600 C T 1313 1312 Asp69Asp
207 Austria 27601 G 1313 1313
208 Austria 27602 G 1315 1315
209 Austria 27603 C 1315 1315
210 Austria 27604 G 1316 1316
211 Austria 27605 T 1316 1316
212 Austria 27606 A 1316 1316
213 Austria 27607 A 1316 1316
214 Austria 27608 A G 1316 1315 Lys72Arg
215 Austria 27609 A 1316 1316
216 Austria 27610 C T 1316 1315 His73Tyr
217 Austria 27611 A 1316 1316
218 Austria 27612 C 1316 1316
219 Austria 27613 G 1316 1316
220 Austria 27614 T 1316 1316
221 Austria 27615 C 1316 1316
222 Austria 27616 T 1316 1316
223 Austria 27617 A 1316 1316
224 Austria 27618 T 1316 1316
225 Austria 27619 C 1316 1315
226 Austria 27620 A 1316 1316
227 Austria 27621 G 1316 1316
228 Austria 27622 T 1316 1316
229 Austria 27623 T 1316 1316
230 Austria 27624 A 1316 1316
231 Austria 27625 C 1316 1316
232 Austria 27626 G 1316 1316
233 Austria 27627 T 1316 1316
234 Austria 27628 G 1316 1316
235 Austria 27629 C T 1316 1313 Ala79Val
236 Austria 27630 C T 1316 1308 Ala79Ala
237 Austria 27631 A 1316 1316
238 Austria 27632 G T 1316 1315 Arg80Ile
239 Austria 27633 A 1316 1316
240 Austria 27634 T 1317 1317
241 Austria 27635 C 1317 1317
242 Austria 27636 A 1317 1317
243 Austria 27637 G 1317 1317
244 Austria 27638 T 1317 1317
245 Austria 27639 T 1317 1317
246 Austria 27640 T 1317 1317
247 Austria 27641 C 1317 1317
248 Austria 27642 A 1317 1317
249 Austria 27643 C T 1317 1316 Pro84Ser
250 Austria 27644 C 1317 1316
251 Austria 27645 T 1317 1317
252 Austria 27646 A 1317 1317
253 Austria 27647 A 1317 1317
254 Austria 27648 A 1317 1317
255 Austria 27649 C 1317 1317
256 Austria 27650 T 1317 1317
257 Austria 27651 G 1317 1317
258 Austria 27652 T 1317 1317
259 Austria 27653 T 1317 1317
260 Austria 27654 C 1317 1316
261 Austria 27655 A 1317 1317
262 Austria 27656 T 1317 1317
263 Austria 27657 C 1317 1317
264 Austria 27658 A 1317 1317
265 Austria 27659 G 1317 1317
266 Austria 27660 A 1317 1317
267 Austria 27661 C 1317 1317
268 Austria 27662 A 1317 1317
269 Austria 27663 A 1317 1317
270 Austria 27664 G 1317 1317
271 Austria 27665 A 1317 1317
272 Austria 27666 G 1317 1317
273 Austria 27667 G 1317 1317
274 Austria 27668 A 1317 1317
275 Austria 27669 A 1317 1317
276 Austria 27670 G 1317 1317
277 Austria 27671 T 1317 1317
278 Austria 27672 T 1317 1317
279 Austria 27673 C T 1317 1316 Gln94*
280 Austria 27674 A 1317 1316
281 Austria 27675 A 1317 1316
282 Austria 27676 G 1317 1315
283 Austria 27677 A 1317 1317
284 Austria 27678 A 1317 1317
285 Austria 27679 C 1317 1317
286 Austria 27680 T 1317 1317
287 Austria 27681 T 1317 1317
288 Austria 27682 T 1317 1317
289 Austria 27683 A 1317 1317
290 Austria 27684 C 1317 1317
291 Austria 27685 T 1317 1317
292 Austria 27686 C 1317 1317
293 Austria 27687 T 1317 1317
294 Austria 27688 C T 1317 1303 Pro99Ser
295 Austria 27689 C 1317 1316
296 Austria 27690 A 1317 1317
297 Austria 27691 A 1317 1317
298 Austria 27692 T 1317 1317
299 Austria 27693 T 1317 1317
300 Austria 27694 T 1317 1317
301 Austria 27695 T 1317 1317
302 Austria 27696 T 1317 1317
303 Austria 27697 C 1317 1317
304 Austria 27698 T 1317 1317
305 Austria 27699 T 1317 1317
306 Austria 27700 A 1317 1317
307 Austria 27701 T 1317 1317
308 Austria 27702 T 1317 1317
309 Austria 27703 G T 1317 1314 Val104Phe
310 Austria 27704 T 1317 1317
311 Austria 27705 T 1317 1317
312 Austria 27706 G 1317 1317
313 Austria 27707 C 1317 1317
314 Austria 27708 G 1317 1317
315 Austria 27709 G T 1317 1316 Ala106Ser
316 Austria 27710 C 1317 1317
317 Austria 27711 A 1317 1317
318 Austria 27712 A 1317 1317
319 Austria 27713 T 1317 1317
320 Austria 27714 A 1317 1317
321 Austria 27715 G 1317 1317
322 Austria 27716 T 1317 1317
323 Austria 27717 G 1317 1317
324 Austria 27718 T 1317 1317
325 Austria 27719 T 1317 1317
326 Austria 27720 T 1317 1317
327 Austria 27721 A 1317 1317
328 Austria 27722 T 1317 1317
329 Austria 27723 A 1317 1317
330 Austria 27724 A 1317 1317
331 Austria 27725 C 1317 1317
332 Austria 27726 A 1317 1317
333 Austria 27727 C 1317 1317
334 Austria 27728 T 1317 1317
335 Austria 27729 T 1317 1317
336 Austria 27730 T 1317 1317
337 Austria 27731 G 1317 1317
338 Austria 27732 C 1317 1317
339 Austria 27733 T 1317 1317
340 Austria 27734 T 1317 1317
341 Austria 27735 C 1317 1317
342 Austria 27736 A 1317 1317
343 Austria 27737 C 1317 1317
344 Austria 27738 A 1317 1317
345 Austria 27739 C 1317 1317
346 Austria 27740 T 1317 1317
347 Austria 27741 C 1317 1317
348 Austria 27742 A 1317 1317
349 Austria 27743 A 1317 1317
350 Austria 27744 A 1317 1317
351 Austria 27745 A 1317 1317
352 Austria 27746 G 1317 1316
353 Austria 27747 A 1317 1317
354 Austria 27748 A 1310 1310
355 Austria 27749 A 1308 1308
356 Austria 27750 G 1308 1308
357 Austria 27751 A 1307 1307
358 Austria 27752 C 1307 1307
359 Austria 27753 A 1307 1307
360 Austria 27754 G 1307 1307
361 Austria 27755 A T 1307 1306 Glu121Val
362 Austria 27756 A 1307 1307
363 Austria 27757 T 1307 1307
364 Austria 27758 G 1307 1307
365 Austria 27759 A 1307 1307