National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     367                                      
?                                            
A     27 3                             2   4  
C 1   18   2                                  
D     6     2                                
E 3   23     2 2         1         2          
F     30         1         2               2  
G     11 1   1 1   1                       1  
H     9                       1     1       2
I     25               1     2             3  
K     20       4       2 3     2     2        
L     45         4         9     1         1  
M     6                   1                  
N     6     1           1     2       2      
P     18                   3     2 1   3      
Q 4   15             3           1 5 1        
R     15   1       2   2             1        
S     21         3 1       2     2     3     1
T     30 2             6 1           1   3    
V     24         3     3   3               2  
Y 1   15   1                                 2

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Australia 27394 A 17211 17211
1 Australia 27395 T 17211 17210
2 Australia 27396 G 17211 17209
3 Australia 27397 A G 17217 17213 Lys2Glu
4 Australia 27398 A 17217 17217
5 Australia 27399 A G 17217 17212 Lys2Lys
6 Australia 27400 A G 17217 17216 Ile3Val
7 Australia 27401 T 17217 17214
8 Australia 27402 T 17217 17214
9 Australia 27403 A G 17217 17216 Ile4Val
10 Australia 27404 T 17217 17215
11 Australia 27405 T 17217 17216
12 Australia 27406 C 17217 17212
13 Australia 27407 T 17217 17211
14 Australia 27408 T 17217 17217
15 Australia 27409 T C 17217 17214 Phe6Leu
16 Australia 27410 T 17217 17217
17 Australia 27411 C 17217 17211
18 Australia 27412 T G 17217 17216 Leu7Val
19 Australia 27413 T 17217 17217
20 Australia 27414 G 17217 17217
21 Australia 27415 G 17217 17217
22 Australia 27416 C T 17217 17215 Ala8Val
23 Australia 27417 A 17217 17217
24 Australia 27418 C 17217 17215
25 Australia 27419 T 17217 17217
26 Australia 27420 G 17217 17216
27 Australia 27421 A 17217 17217
28 Australia 27422 T 17217 17217
29 Australia 27423 A 17217 17217
30 Australia 27424 A 17217 17217
31 Australia 27425 C A 17217 17214 Thr11Lys
32 Australia 27426 A T 17217 17216 Thr11Thr
33 Australia 27427 C 17217 17216
34 Australia 27428 T 17217 17215
35 Australia 27429 C 17217 17216
36 Australia 27430 G 17217 17213
37 Australia 27431 C 17217 17217
38 Australia 27432 T 17217 17217
39 Australia 27433 A G 17217 17215 Thr14Ala
40 Australia 27434 C T 17217 17203 Thr14Ile
41 Australia 27435 T 17217 17216
42 Australia 27436 T 17217 17216
43 Australia 27437 G 17217 17216
44 Australia 27438 T 17217 17216
45 Australia 27439 G 17217 17215
46 Australia 27440 A 17217 17216
47 Australia 27441 G 17217 17216
48 Australia 27442 C T 17217 17213 Leu17Phe
49 Australia 27443 T 17217 17210
50 Australia 27444 T 17217 17214
51 Australia 27445 T 17217 17215
52 Australia 27446 A 17217 17215
53 Australia 27447 T 17217 17215
54 Australia 27448 C 17217 17215
55 Australia 27449 A G 17217 17212 His19Arg
56 Australia 27450 C 17217 17214
57 Australia 27451 T 17217 17213
58 Australia 27452 A 17217 17211
59 Australia 27453 C 17217 17214
60 Australia 27454 C 17217 17212
61 Australia 27455 A G 17217 17211 Gln21Arg
62 Australia 27456 A G 17217 17211 Gln21Gln
63 Australia 27457 G 17218 17214
64 Australia 27458 A 17218 17215
65 Australia 27459 G T 17218 17212 Glu22Asp
66 Australia 27460 T 17218 17213
67 Australia 27461 G 17219 17214
68 Australia 27462 T 17222 17221
69 Australia 27463 G A 17222 17211 Val24Ile
70 Australia 27464 T 17223 17221
71 Australia 27465 T 17223 17222
72 Australia 27466 A G 17223 17218 Arg25Gly
73 Australia 27467 G 17223 17221
74 Australia 27468 A 17223 17219
75 Australia 27469 G 17224 17220
76 Australia 27470 G A 17224 17219 Gly26Asp
77 Australia 27471 T 17225 17222
78 Australia 27472 A G 17257 17256 Thr27Ala
79 Australia 27473 C 17257 17256
80 Australia 27474 A 17257 17256
81 Australia 27475 A 17258 17258
82 Australia 27476 C T,G 17258 17248 Thr28Ile-p.Thr28Arg
83 Australia 27477 A 17258 17257
84 Australia 27478 G T 17258 17256 Val29Leu
85 Australia 27479 T 17258 17258
86 Australia 27480 A G 17258 17257 Val29Val
87 Australia 27481 C 17257 17253
88 Australia 27482 T 17257 17254
89 Australia 27483 T C 17257 17222 Leu30Leu
90 Australia 27484 T C 17257 17243 Leu31Leu
91 Australia 27485 T 17257 17255
92 Australia 27486 A G 17256 17251 Leu31Leu
93 Australia 27487 A 17256 17256
94 Australia 27488 A 17256 17256
95 Australia 27489 A 17255 17253
96 Australia 27490 G 17255 17254
97 Australia 27491 A 17254 17254
98 Australia 27492 A 17254 17254
99 Australia 27493 C T 17252 17246 Pro34Ser
100 Australia 27494 C T 17252 17243 Pro34Leu
101 Australia 27495 T 17252 17251
102 Australia 27496 T 17252 17251
103 Australia 27497 G 17252 17251
104 Australia 27498 C A 17252 17251 Cys35*
105 Australia 27499 T C 17252 17251 Ser36Pro
106 Australia 27500 C T 17252 17250 Ser36Phe
107 Australia 27501 T 17252 17252
108 Australia 27502 T 17252 17251
109 Australia 27503 C T,A 17252 17227 Ser37Phe-p.Ser37Tyr
110 Australia 27504 T C 17252 17249 Ser37Ser
111 Australia 27505 G 17252 17240
112 Australia 27506 G A,C,T 17252 17134 Gly38Ala-p.Gly38Val
113 Australia 27507 A 17252 17250
114 Australia 27508 A 17251 17249
115 Australia 27509 C T 17246 17214 Thr39Ile
116 Australia 27510 A 17246 17245
117 Australia 27511 T 17245 17243
118 Australia 27512 A G 17210 17199 Tyr40Cys
119 Australia 27513 C T 17210 17163 Tyr40Tyr
120 Australia 27514 G T 17204 17189 Glu41*
121 Australia 27515 A 17198 17189
122 Australia 27516 G 17198 17189
123 Australia 27517 G 17198 17191
124 Australia 27518 G 17196 17188
125 Australia 27519 C 17191 17180
126 Australia 27520 A 17168 17155
127 Australia 27521 A G 17168 17155 Asn43Ser
128 Australia 27522 T C 17166 17151 Asn43Asn
129 Australia 27523 T 17163 17151
130 Australia 27524 C 17158 17141
131 Australia 27525 A G 17130 17104 Ser44Ser
132 Australia 27526 C 17123 17100
133 Australia 27527 C A 17092 17052 Pro45Gln
134 Australia 27528 A 17010 16965
135 Australia 27529 T G 17008 16959 Phe46Val
136 Australia 27530 T 17008 16969
137 Australia 27531 T 17007 16968
138 Australia 27532 C T,A 17007 16960 His47Tyr-p.His47Asn
139 Australia 27533 A 17007 16970
140 Australia 27534 T 17006 16975
141 Australia 27535 C 17006 16978
142 Australia 27536 C 17006 16978
143 Australia 27537 T 17004 16979
144 Australia 27538 C T 17004 16974 Leu49Leu
145 Australia 27539 T C 17004 16977 Leu49Pro
146 Australia 27540 A 17004 16978
147 Australia 27541 G T 17004 16974 Ala50Ser
148 Australia 27542 C T 17004 16978 Ala50Val
149 Australia 27543 T 17004 16979
150 Australia 27544 G 17003 16979
151 Australia 27545 A 17002 16978
152 Australia 27546 T C 17002 16980 Asp51Asp
153 Australia 27547 A G 17002 16980 Asn52Asp
154 Australia 27548 A G 17002 16979 Asn52Ser
155 Australia 27549 C T,A 17002 16978 Asn52Lys-p.Asn52Asn
156 Australia 27550 A 17001 16982
157 Australia 27551 A T,G 17001 16984 Lys53Ile-p.Lys53Arg
158 Australia 27552 A G 17001 16985 Lys53Lys
159 Australia 27553 T 17001 16980
160 Australia 27554 T 16998 16981
161 Australia 27555 T 16996 16978
162 Australia 27556 G 16996 16971
163 Australia 27557 C 16996 16977
164 Australia 27558 A 16996 16975
165 Australia 27559 C T 16996 16971 Leu56Leu
166 Australia 27560 T 16996 16974
167 Australia 27561 G T 16997 16976 Leu56Leu
168 Australia 27562 A 16997 16981
169 Australia 27563 C 16997 16981
170 Australia 27564 T 16997 16980
171 Australia 27565 T 16997 16982
172 Australia 27566 G 16997 16983
173 Australia 27567 C T 16997 16978 Cys58Cys
174 Australia 27568 T 16997 16981
175 Australia 27569 T 16996 16983
176 Australia 27570 T 16995 16979
177 Australia 27571 A G 16994 16975 Ser60Gly
178 Australia 27572 G 16993 16978
179 Australia 27573 C 16993 16977
180 Australia 27574 A 16989 16973
181 Australia 27575 C 16989 16979
182 Australia 27576 T 16988 16978
183 Australia 27577 C T 16991 16978 Gln62*
184 Australia 27578 A 16992 16985
185 Australia 27579 A T,G 16993 16979 Gln62His-p.Gln62Gln
186 Australia 27580 T G 16991 16978 Phe63Val
187 Australia 27581 T 16991 16981
188 Australia 27582 T 16990 16980
189 Australia 27583 G T 16991 16970 Ala64Ser
190 Australia 27584 C T 16990 16979 Ala64Val
191 Australia 27585 T 16990 16977
192 Australia 27586 T 16990 16981
193 Australia 27587 T 16990 16982
194 Australia 27588 T 16990 16983
195 Australia 27589 G 16989 16983
196 Australia 27590 C 16989 16982
197 Australia 27591 T C 16989 16980 Ala66Ala
198 Australia 27592 T 16989 16984
199 Australia 27593 G 16989 16984
200 Australia 27594 T C 16989 16980 Cys67Cys
201 Australia 27595 C 16989 16984
202 Australia 27596 C 16988 16983
203 Australia 27597 T C 16989 16982 Pro68Pro
204 Australia 27598 G 16989 16983
205 Australia 27599 A 16987 16983
206 Australia 27600 C T 16986 16973 Asp69Asp
207 Australia 27601 G 16986 16976
208 Australia 27602 G 16987 16979
209 Australia 27603 C T 16987 16980 Gly70Gly
210 Australia 27604 G T 16987 16978 Val71Leu
211 Australia 27605 T 16987 16983
212 Australia 27606 A 16986 16978
213 Australia 27607 A G 16987 16982 Lys72Glu
214 Australia 27608 A 16987 16984
215 Australia 27609 A 16987 16983
216 Australia 27610 C T 16987 16977 His73Tyr
217 Australia 27611 A 16986 16980
218 Australia 27612 C 16987 16975
219 Australia 27613 G T,A 16987 16970 Val74Phe-p.Val74Ile
220 Australia 27614 T 16987 16974
221 Australia 27615 C 16985 16972
222 Australia 27616 T 16985 16971
223 Australia 27617 A 16985 16972
224 Australia 27618 T C 16984 16967 Tyr75Tyr
225 Australia 27619 C T 16980 16952 Gln76*
226 Australia 27620 A C 16980 16958 Gln76Pro
227 Australia 27621 G T,A 16978 16956 Gln76His-p.Gln76Gln
228 Australia 27622 T 16978 16957
229 Australia 27623 T 16978 16957
230 Australia 27624 A G 16978 16954 Leu77Leu
231 Australia 27625 C T 16978 16954 Arg78Cys
232 Australia 27626 G 16978 16958
233 Australia 27627 T 16978 16959
234 Australia 27628 G 16978 16960
235 Australia 27629 C 16978 16961
236 Australia 27630 C T 16978 16957 Ala79Ala
237 Australia 27631 A 16977 16958
238 Australia 27632 G T 16975 16953 Arg80Ile
239 Australia 27633 A G 16975 16959 Arg80Arg
240 Australia 27634 T C 16977 16955 Ser81Pro
241 Australia 27635 C T 16977 16898 Ser81Leu
242 Australia 27636 A 16976 16954
243 Australia 27637 G A 16976 16954 Val82Ile
244 Australia 27638 T 16976 16963
245 Australia 27639 T C 16976 16964 Val82Val
246 Australia 27640 T 16976 16965
247 Australia 27641 C T 16979 16964 Ser83Leu
248 Australia 27642 A 16979 16970
249 Australia 27643 C T 16979 16964 Pro84Ser
250 Australia 27644 C T 16979 16952 Pro84Leu
251 Australia 27645 T 16979 16966
252 Australia 27646 A 16978 16966
253 Australia 27647 A G 16978 16965 Lys85Arg
254 Australia 27648 A 16977 16965
255 Australia 27649 C 16974 16957
256 Australia 27650 T 16974 16955
257 Australia 27651 G 16974 16955
258 Australia 27652 T 16974 16957
259 Australia 27653 T 16974 16958
260 Australia 27654 C T 16974 16935 Phe87Phe
261 Australia 27655 A 16974 16959
262 Australia 27656 T 16974 16959
263 Australia 27657 C T 16974 16957 Ile88Ile
264 Australia 27658 A 16974 16958
265 Australia 27659 G T 16975 16959 Arg89Ile
266 Australia 27660 A 16975 16960
267 Australia 27661 C T 16974 16955 Gln90*
268 Australia 27662 A 16974 16965
269 Australia 27663 A G 16974 16963 Gln90Gln
270 Australia 27664 G 16974 16964
271 Australia 27665 A 16973 16965
272 Australia 27666 G A 16973 16947 Glu91Glu
273 Australia 27667 G 16972 16960
274 Australia 27668 A 16972 16959
275 Australia 27669 A G 16972 16952 Glu92Glu
276 Australia 27670 G T,C 16972 16950 Val93Phe-p.Val93Leu
277 Australia 27671 T 16972 16962
278 Australia 27672 T 16972 16962
279 Australia 27673 C T 16972 16954 Gln94*
280 Australia 27674 A 16972 16963
281 Australia 27675 A C,G 16972 16955 Gln94His-p.Gln94Gln
282 Australia 27676 G T,C 16972 16952 Glu95*-p.Glu95Gln
283 Australia 27677 A 16972 16962
284 Australia 27678 A 16972 16963
285 Australia 27679 C T 16972 16953 Leu96Phe
286 Australia 27680 T 16971 16953
287 Australia 27681 T 16971 16958
288 Australia 27682 T 16971 16955
289 Australia 27683 A 16972 16958
290 Australia 27684 C A 16971 16954 Tyr97*
291 Australia 27685 T 16972 16955
292 Australia 27686 C T 16974 16958 Ser98Phe
293 Australia 27687 T C 16974 16958 Ser98Ser
294 Australia 27688 C T 16973 16940 Pro99Ser
295 Australia 27689 C T 16973 16957 Pro99Leu
296 Australia 27690 A G 16973 16961 Pro99Pro
297 Australia 27691 A G 16968 16952 Ile100Val
298 Australia 27692 T 16968 16953
299 Australia 27693 T G 16968 16955 Ile100Met
300 Australia 27694 T 16962 16951
301 Australia 27695 T 16962 16951
302 Australia 27696 T 16962 16951
303 Australia 27697 C T 16962 16950 Leu102Phe
304 Australia 27698 T 16962 16954
305 Australia 27699 T C 16962 16954 Leu102Leu
306 Australia 27700 A 16962 16955
307 Australia 27701 T 16961 16957
308 Australia 27702 T 16961 16956
309 Australia 27703 G T 16960 16950 Val104Phe
310 Australia 27704 T 16960 16957
311 Australia 27705 T 16960 16956
312 Australia 27706 G 16960 16955
313 Australia 27707 C T 16960 16951 Ala105Val
314 Australia 27708 G 16959 16956
315 Australia 27709 G 16959 16956
316 Australia 27710 C 16957 16953
317 Australia 27711 A G 16957 16952 Ala106Ala
318 Australia 27712 A 16955 16952
319 Australia 27713 T 16955 16953
320 Australia 27714 A 16955 16949
321 Australia 27715 G 16955 16950
322 Australia 27716 T 16955 16948
323 Australia 27717 G 16954 16950
324 Australia 27718 T 16954 16949
325 Australia 27719 T 16954 16950
326 Australia 27720 T 16954 16951
327 Australia 27721 A 16954 16949
328 Australia 27722 T 16954 16950
329 Australia 27723 A G 16954 16950 Ile110Met
330 Australia 27724 A 16953 16950
331 Australia 27725 C T 16953 16949 Thr111Ile
332 Australia 27726 A 16950 16950
333 Australia 27727 C 16950 16949
334 Australia 27728 T 16947 16945
335 Australia 27729 T 16947 16945
336 Australia 27730 T 16947 16944
337 Australia 27731 G 16947 16945
338 Australia 27732 C 16946 16943
339 Australia 27733 T C 16946 16943 Phe114Leu
340 Australia 27734 T 16944 16943
341 Australia 27735 C 16944 16938
342 Australia 27736 A 16944 16943
343 Australia 27737 C T 16944 16940 Thr115Ile
344 Australia 27738 A 16943 16941
345 Australia 27739 C T 16943 16933 Leu116Phe
346 Australia 27740 T 16943 16940
347 Australia 27741 C T 16943 16934 Leu116Leu
348 Australia 27742 A G 16943 16938 Lys117Glu
349 Australia 27743 A T 16943 16941 Lys117Ile
350 Australia 27744 A 16943 16943
351 Australia 27745 A G 16943 16940 Arg118Gly
352 Australia 27746 G 16943 16940
353 Australia 27747 A 16943 16943
354 Australia 27748 A G 16941 16940 Lys119Glu
355 Australia 27749 A 16940 16939
356 Australia 27750 G T,C,A 16937 16934 Lys119Asn-p.Lys119Lys
357 Australia 27751 A 16937 16936
358 Australia 27752 C T 16937 16927 Thr120Ile
359 Australia 27753 A T,G 16933 16927 Thr120Thr-p.Thr120Thr
360 Australia 27754 G A,T,C 16933 16923 Glu121Lys-p.Glu121Gln
361 Australia 27755 A 16933 16933
362 Australia 27756 A C 16933 16931 -p.Glu121Asp
363 Australia 27757 T 16933 16933
364 Australia 27758 G 16917 16916
365 Australia 27759 A 16912 16912