National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Aruba 27394 A 11 11
1 Aruba 27395 T 11 11
2 Aruba 27396 G 11 11
3 Aruba 27397 A 11 11
4 Aruba 27398 A 11 11
5 Aruba 27399 A 11 11
6 Aruba 27400 A 11 11
7 Aruba 27401 T 11 11
8 Aruba 27402 T 11 11
9 Aruba 27403 A 11 11
10 Aruba 27404 T 11 11
11 Aruba 27405 T 11 11
12 Aruba 27406 C 11 11
13 Aruba 27407 T 11 11
14 Aruba 27408 T 11 11
15 Aruba 27409 T 11 11
16 Aruba 27410 T 11 11
17 Aruba 27411 C 11 11
18 Aruba 27412 T 11 11
19 Aruba 27413 T 11 11
20 Aruba 27414 G 11 11
21 Aruba 27415 G 11 11
22 Aruba 27416 C 11 11
23 Aruba 27417 A 11 11
24 Aruba 27418 C 11 11
25 Aruba 27419 T 11 11
26 Aruba 27420 G 11 11
27 Aruba 27421 A 11 11
28 Aruba 27422 T 11 11
29 Aruba 27423 A 11 11
30 Aruba 27424 A 11 11
31 Aruba 27425 C 11 11
32 Aruba 27426 A 11 11
33 Aruba 27427 C 11 11
34 Aruba 27428 T 11 11
35 Aruba 27429 C 11 11
36 Aruba 27430 G 11 11
37 Aruba 27431 C 11 11
38 Aruba 27432 T 11 11
39 Aruba 27433 A 11 11
40 Aruba 27434 C 11 11
41 Aruba 27435 T 11 11
42 Aruba 27436 T 11 11
43 Aruba 27437 G 11 11
44 Aruba 27438 T 11 11
45 Aruba 27439 G 11 11
46 Aruba 27440 A 11 11
47 Aruba 27441 G 11 11
48 Aruba 27442 C 11 11
49 Aruba 27443 T 11 11
50 Aruba 27444 T 11 11
51 Aruba 27445 T 11 11
52 Aruba 27446 A 11 11
53 Aruba 27447 T 11 11
54 Aruba 27448 C 11 11
55 Aruba 27449 A 11 11
56 Aruba 27450 C 11 11
57 Aruba 27451 T 11 11
58 Aruba 27452 A 11 11
59 Aruba 27453 C 11 11
60 Aruba 27454 C 11 11
61 Aruba 27455 A 11 11
62 Aruba 27456 A 11 11
63 Aruba 27457 G 11 11
64 Aruba 27458 A 11 11
65 Aruba 27459 G 11 11
66 Aruba 27460 T 11 11
67 Aruba 27461 G 11 11
68 Aruba 27462 T 11 11
69 Aruba 27463 G 11 11
70 Aruba 27464 T 11 11
71 Aruba 27465 T 11 11
72 Aruba 27466 A 11 11
73 Aruba 27467 G 11 11
74 Aruba 27468 A 11 11
75 Aruba 27469 G 11 11
76 Aruba 27470 G 11 11
77 Aruba 27471 T 11 11
78 Aruba 27472 A 11 11
79 Aruba 27473 C 11 11
80 Aruba 27474 A 11 11
81 Aruba 27475 A 11 11
82 Aruba 27476 C 11 11
83 Aruba 27477 A 11 11
84 Aruba 27478 G 11 11
85 Aruba 27479 T 11 11
86 Aruba 27480 A 11 11
87 Aruba 27481 C 11 11
88 Aruba 27482 T 11 11
89 Aruba 27483 T 11 11
90 Aruba 27484 T 11 11
91 Aruba 27485 T 11 11
92 Aruba 27486 A 11 11
93 Aruba 27487 A 11 11
94 Aruba 27488 A 11 11
95 Aruba 27489 A 11 11
96 Aruba 27490 G 11 11
97 Aruba 27491 A 11 11
98 Aruba 27492 A 11 11
99 Aruba 27493 C 11 11
100 Aruba 27494 C 11 11
101 Aruba 27495 T 11 11
102 Aruba 27496 T 11 11
103 Aruba 27497 G 11 11
104 Aruba 27498 C 11 11
105 Aruba 27499 T 11 11
106 Aruba 27500 C 11 11
107 Aruba 27501 T 11 11
108 Aruba 27502 T 11 11
109 Aruba 27503 C 11 11
110 Aruba 27504 T 11 11
111 Aruba 27505 G 11 11
112 Aruba 27506 G 11 11
113 Aruba 27507 A 11 11
114 Aruba 27508 A 11 11
115 Aruba 27509 C 11 11
116 Aruba 27510 A 11 11
117 Aruba 27511 T 11 11
118 Aruba 27512 A 11 11
119 Aruba 27513 C 11 11
120 Aruba 27514 G 11 11
121 Aruba 27515 A 11 11
122 Aruba 27516 G 11 11
123 Aruba 27517 G 11 11
124 Aruba 27518 G 11 11
125 Aruba 27519 C 11 11
126 Aruba 27520 A 11 11
127 Aruba 27521 A 11 11
128 Aruba 27522 T 11 11
129 Aruba 27523 T 11 11
130 Aruba 27524 C 11 11
131 Aruba 27525 A 11 11
132 Aruba 27526 C 11 11
133 Aruba 27527 C 11 11
134 Aruba 27528 A 11 11
135 Aruba 27529 T 11 11
136 Aruba 27530 T 11 11
137 Aruba 27531 T 11 11
138 Aruba 27532 C 11 11
139 Aruba 27533 A 11 11
140 Aruba 27534 T 11 11
141 Aruba 27535 C 11 11
142 Aruba 27536 C 11 11
143 Aruba 27537 T 11 11
144 Aruba 27538 C 11 11
145 Aruba 27539 T 11 11
146 Aruba 27540 A 11 11
147 Aruba 27541 G 11 11
148 Aruba 27542 C 11 11
149 Aruba 27543 T 11 11
150 Aruba 27544 G 11 11
151 Aruba 27545 A 11 11
152 Aruba 27546 T 11 11
153 Aruba 27547 A 11 11
154 Aruba 27548 A 11 11
155 Aruba 27549 C 11 11
156 Aruba 27550 A 11 11
157 Aruba 27551 A 11 11
158 Aruba 27552 A 11 11
159 Aruba 27553 T 11 11
160 Aruba 27554 T 11 11
161 Aruba 27555 T 11 11
162 Aruba 27556 G 11 11
163 Aruba 27557 C 11 11
164 Aruba 27558 A 11 11
165 Aruba 27559 C 11 11
166 Aruba 27560 T 11 11
167 Aruba 27561 G 11 11
168 Aruba 27562 A 11 11
169 Aruba 27563 C 11 11
170 Aruba 27564 T 11 11
171 Aruba 27565 T 11 11
172 Aruba 27566 G 11 11
173 Aruba 27567 C 11 11
174 Aruba 27568 T 11 11
175 Aruba 27569 T 11 11
176 Aruba 27570 T 11 11
177 Aruba 27571 A 11 11
178 Aruba 27572 G 11 11
179 Aruba 27573 C 11 11
180 Aruba 27574 A 11 11
181 Aruba 27575 C 11 11
182 Aruba 27576 T 11 11
183 Aruba 27577 C 11 11
184 Aruba 27578 A 11 11
185 Aruba 27579 A 11 11
186 Aruba 27580 T 11 11
187 Aruba 27581 T 11 11
188 Aruba 27582 T 11 11
189 Aruba 27583 G 11 11
190 Aruba 27584 C 11 11
191 Aruba 27585 T 11 11
192 Aruba 27586 T 11 11
193 Aruba 27587 T 11 11
194 Aruba 27588 T 11 11
195 Aruba 27589 G 11 11
196 Aruba 27590 C 11 11
197 Aruba 27591 T 11 11
198 Aruba 27592 T 11 11
199 Aruba 27593 G 11 11
200 Aruba 27594 T 11 11
201 Aruba 27595 C 11 11
202 Aruba 27596 C 11 11
203 Aruba 27597 T 11 11
204 Aruba 27598 G 11 11
205 Aruba 27599 A 11 11
206 Aruba 27600 C 11 11
207 Aruba 27601 G 11 11
208 Aruba 27602 G 11 11
209 Aruba 27603 C 11 11
210 Aruba 27604 G 11 11
211 Aruba 27605 T 11 11
212 Aruba 27606 A 11 11
213 Aruba 27607 A 11 11
214 Aruba 27608 A 11 11
215 Aruba 27609 A 11 11
216 Aruba 27610 C 11 11
217 Aruba 27611 A 11 11
218 Aruba 27612 C 11 11
219 Aruba 27613 G 11 11
220 Aruba 27614 T 11 11
221 Aruba 27615 C 11 11
222 Aruba 27616 T 11 11
223 Aruba 27617 A 11 11
224 Aruba 27618 T 11 11
225 Aruba 27619 C 11 11
226 Aruba 27620 A 11 11
227 Aruba 27621 G 11 11
228 Aruba 27622 T 11 11
229 Aruba 27623 T 11 11
230 Aruba 27624 A 11 11
231 Aruba 27625 C 11 11
232 Aruba 27626 G 11 11
233 Aruba 27627 T 11 11
234 Aruba 27628 G 11 11
235 Aruba 27629 C 11 11
236 Aruba 27630 C 11 11
237 Aruba 27631 A 11 11
238 Aruba 27632 G 11 11
239 Aruba 27633 A 11 11
240 Aruba 27634 T 11 11
241 Aruba 27635 C 11 11
242 Aruba 27636 A 11 11
243 Aruba 27637 G 11 11
244 Aruba 27638 T 11 11
245 Aruba 27639 T 11 11
246 Aruba 27640 T 11 11
247 Aruba 27641 C 11 11
248 Aruba 27642 A 11 11
249 Aruba 27643 C 11 11
250 Aruba 27644 C 11 11
251 Aruba 27645 T 11 11
252 Aruba 27646 A 11 11
253 Aruba 27647 A 11 11
254 Aruba 27648 A 11 11
255 Aruba 27649 C 11 11
256 Aruba 27650 T 11 11
257 Aruba 27651 G 11 11
258 Aruba 27652 T 11 11
259 Aruba 27653 T 11 11
260 Aruba 27654 C 11 11
261 Aruba 27655 A 11 11
262 Aruba 27656 T 11 11
263 Aruba 27657 C 11 11
264 Aruba 27658 A 11 11
265 Aruba 27659 G 11 11
266 Aruba 27660 A 11 11
267 Aruba 27661 C 11 11
268 Aruba 27662 A 11 11
269 Aruba 27663 A 11 11
270 Aruba 27664 G 11 11
271 Aruba 27665 A 11 11
272 Aruba 27666 G 11 11
273 Aruba 27667 G 11 11
274 Aruba 27668 A 11 11
275 Aruba 27669 A 11 11
276 Aruba 27670 G 11 11
277 Aruba 27671 T 11 11
278 Aruba 27672 T 11 11
279 Aruba 27673 C 11 11
280 Aruba 27674 A 11 11
281 Aruba 27675 A 11 11
282 Aruba 27676 G 11 11
283 Aruba 27677 A 11 11
284 Aruba 27678 A 11 11
285 Aruba 27679 C 11 11
286 Aruba 27680 T 11 11
287 Aruba 27681 T 11 11
288 Aruba 27682 T 11 11
289 Aruba 27683 A 11 11
290 Aruba 27684 C 11 11
291 Aruba 27685 T 11 11
292 Aruba 27686 C 11 11
293 Aruba 27687 T 11 11
294 Aruba 27688 C 11 11
295 Aruba 27689 C 11 11
296 Aruba 27690 A 11 11
297 Aruba 27691 A 11 11
298 Aruba 27692 T 11 11
299 Aruba 27693 T 11 11
300 Aruba 27694 T 11 11
301 Aruba 27695 T 11 11
302 Aruba 27696 T 11 11
303 Aruba 27697 C 11 11
304 Aruba 27698 T 11 11
305 Aruba 27699 T 11 11
306 Aruba 27700 A 11 11
307 Aruba 27701 T 11 11
308 Aruba 27702 T 11 11
309 Aruba 27703 G 11 11
310 Aruba 27704 T 11 11
311 Aruba 27705 T 11 11
312 Aruba 27706 G 11 11
313 Aruba 27707 C 11 11
314 Aruba 27708 G 11 11
315 Aruba 27709 G 11 11
316 Aruba 27710 C 11 11
317 Aruba 27711 A 11 11
318 Aruba 27712 A 11 11
319 Aruba 27713 T 11 11
320 Aruba 27714 A 11 11
321 Aruba 27715 G 11 11
322 Aruba 27716 T 11 11
323 Aruba 27717 G 11 11
324 Aruba 27718 T 11 11
325 Aruba 27719 T 11 11
326 Aruba 27720 T 11 11
327 Aruba 27721 A 11 11
328 Aruba 27722 T 11 11
329 Aruba 27723 A 11 11
330 Aruba 27724 A 11 11
331 Aruba 27725 C 11 11
332 Aruba 27726 A 11 11
333 Aruba 27727 C 11 11
334 Aruba 27728 T 11 11
335 Aruba 27729 T 11 11
336 Aruba 27730 T 11 11
337 Aruba 27731 G 11 11
338 Aruba 27732 C 11 11
339 Aruba 27733 T 11 11
340 Aruba 27734 T 11 11
341 Aruba 27735 C 11 11
342 Aruba 27736 A 11 11
343 Aruba 27737 C 11 11
344 Aruba 27738 A 11 11
345 Aruba 27739 C 11 11
346 Aruba 27740 T 11 11
347 Aruba 27741 C 11 11
348 Aruba 27742 A 11 11
349 Aruba 27743 A 11 11
350 Aruba 27744 A 11 11
351 Aruba 27745 A 11 11
352 Aruba 27746 G 11 11
353 Aruba 27747 A 11 11
354 Aruba 27748 A 11 11
355 Aruba 27749 A 11 11
356 Aruba 27750 G 11 11
357 Aruba 27751 A 11 11
358 Aruba 27752 C 11 11
359 Aruba 27753 A 11 11
360 Aruba 27754 G 11 11
361 Aruba 27755 A 11 11
362 Aruba 27756 A 11 11
363 Aruba 27757 T 11 11
364 Aruba 27758 G 11 11
365 Aruba 27759 A 11 11