National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Armenia 27394 A 3 3
1 Armenia 27395 T 3 3
2 Armenia 27396 G 3 3
3 Armenia 27397 A 3 3
4 Armenia 27398 A 3 3
5 Armenia 27399 A 3 3
6 Armenia 27400 A 3 3
7 Armenia 27401 T 3 3
8 Armenia 27402 T 3 3
9 Armenia 27403 A 3 3
10 Armenia 27404 T 3 3
11 Armenia 27405 T 3 3
12 Armenia 27406 C 3 3
13 Armenia 27407 T 3 3
14 Armenia 27408 T 3 3
15 Armenia 27409 T 3 3
16 Armenia 27410 T 3 3
17 Armenia 27411 C 3 3
18 Armenia 27412 T 3 3
19 Armenia 27413 T 3 3
20 Armenia 27414 G 3 3
21 Armenia 27415 G 3 3
22 Armenia 27416 C 3 3
23 Armenia 27417 A 3 3
24 Armenia 27418 C 3 3
25 Armenia 27419 T 3 3
26 Armenia 27420 G 3 3
27 Armenia 27421 A 3 3
28 Armenia 27422 T 3 3
29 Armenia 27423 A 3 3
30 Armenia 27424 A 3 3
31 Armenia 27425 C 3 3
32 Armenia 27426 A 3 3
33 Armenia 27427 C 3 3
34 Armenia 27428 T 3 3
35 Armenia 27429 C 3 3
36 Armenia 27430 G 3 3
37 Armenia 27431 C 3 3
38 Armenia 27432 T 3 3
39 Armenia 27433 A 3 3
40 Armenia 27434 C 3 3
41 Armenia 27435 T 3 3
42 Armenia 27436 T 3 3
43 Armenia 27437 G 3 3
44 Armenia 27438 T 3 3
45 Armenia 27439 G 3 3
46 Armenia 27440 A 3 3
47 Armenia 27441 G 3 3
48 Armenia 27442 C 3 3
49 Armenia 27443 T 3 3
50 Armenia 27444 T 3 3
51 Armenia 27445 T 3 3
52 Armenia 27446 A 3 3
53 Armenia 27447 T 3 3
54 Armenia 27448 C 3 3
55 Armenia 27449 A 3 3
56 Armenia 27450 C 3 3
57 Armenia 27451 T 3 3
58 Armenia 27452 A 3 3
59 Armenia 27453 C 3 3
60 Armenia 27454 C 3 3
61 Armenia 27455 A 3 3
62 Armenia 27456 A 3 3
63 Armenia 27457 G 3 3
64 Armenia 27458 A 3 3
65 Armenia 27459 G 3 3
66 Armenia 27460 T 3 3
67 Armenia 27461 G 3 3
68 Armenia 27462 T 3 3
69 Armenia 27463 G 3 3
70 Armenia 27464 T 3 3
71 Armenia 27465 T 3 3
72 Armenia 27466 A 3 3
73 Armenia 27467 G 3 3
74 Armenia 27468 A 3 3
75 Armenia 27469 G 3 3
76 Armenia 27470 G 3 3
77 Armenia 27471 T 3 3
78 Armenia 27472 A 3 3
79 Armenia 27473 C 3 3
80 Armenia 27474 A 3 3
81 Armenia 27475 A 3 3
82 Armenia 27476 C 3 3
83 Armenia 27477 A 3 3
84 Armenia 27478 G 3 3
85 Armenia 27479 T 3 3
86 Armenia 27480 A 3 3
87 Armenia 27481 C 3 3
88 Armenia 27482 T 3 3
89 Armenia 27483 T 3 3
90 Armenia 27484 T 3 3
91 Armenia 27485 T 3 3
92 Armenia 27486 A 3 3
93 Armenia 27487 A 3 3
94 Armenia 27488 A 3 3
95 Armenia 27489 A 3 3
96 Armenia 27490 G 3 3
97 Armenia 27491 A 3 3
98 Armenia 27492 A 3 3
99 Armenia 27493 C 3 3
100 Armenia 27494 C 3 3
101 Armenia 27495 T 3 3
102 Armenia 27496 T 3 3
103 Armenia 27497 G 3 3
104 Armenia 27498 C 3 3
105 Armenia 27499 T 3 3
106 Armenia 27500 C 3 3
107 Armenia 27501 T 3 3
108 Armenia 27502 T 3 3
109 Armenia 27503 C 3 3
110 Armenia 27504 T 3 3
111 Armenia 27505 G 3 3
112 Armenia 27506 G 3 3
113 Armenia 27507 A 3 3
114 Armenia 27508 A 3 3
115 Armenia 27509 C 3 3
116 Armenia 27510 A 3 3
117 Armenia 27511 T 3 3
118 Armenia 27512 A 3 3
119 Armenia 27513 C 3 3
120 Armenia 27514 G 3 3
121 Armenia 27515 A 3 3
122 Armenia 27516 G 3 3
123 Armenia 27517 G 3 3
124 Armenia 27518 G 3 3
125 Armenia 27519 C 3 3
126 Armenia 27520 A 3 3
127 Armenia 27521 A 3 3
128 Armenia 27522 T 3 3
129 Armenia 27523 T 3 3
130 Armenia 27524 C 3 3
131 Armenia 27525 A 3 3
132 Armenia 27526 C 3 3
133 Armenia 27527 C 3 3
134 Armenia 27528 A 3 3
135 Armenia 27529 T 3 3
136 Armenia 27530 T 3 3
137 Armenia 27531 T 3 3
138 Armenia 27532 C 3 3
139 Armenia 27533 A 3 3
140 Armenia 27534 T 3 3
141 Armenia 27535 C 3 3
142 Armenia 27536 C 3 3
143 Armenia 27537 T 3 3
144 Armenia 27538 C 3 3
145 Armenia 27539 T 3 3
146 Armenia 27540 A 3 3
147 Armenia 27541 G 3 3
148 Armenia 27542 C 3 3
149 Armenia 27543 T 3 3
150 Armenia 27544 G 3 3
151 Armenia 27545 A 3 3
152 Armenia 27546 T 3 3
153 Armenia 27547 A 3 3
154 Armenia 27548 A 3 3
155 Armenia 27549 C 3 3
156 Armenia 27550 A 3 3
157 Armenia 27551 A 3 3
158 Armenia 27552 A 3 3
159 Armenia 27553 T 3 3
160 Armenia 27554 T 3 3
161 Armenia 27555 T 3 3
162 Armenia 27556 G 3 3
163 Armenia 27557 C 3 3
164 Armenia 27558 A 3 3
165 Armenia 27559 C 3 3
166 Armenia 27560 T 3 3
167 Armenia 27561 G 3 3
168 Armenia 27562 A 3 3
169 Armenia 27563 C 3 3
170 Armenia 27564 T 3 3
171 Armenia 27565 T 3 3
172 Armenia 27566 G 3 3
173 Armenia 27567 C 3 3
174 Armenia 27568 T 3 3
175 Armenia 27569 T 3 3
176 Armenia 27570 T 3 3
177 Armenia 27571 A 3 3
178 Armenia 27572 G 3 3
179 Armenia 27573 C 3 3
180 Armenia 27574 A 3 3
181 Armenia 27575 C 3 3
182 Armenia 27576 T 3 3
183 Armenia 27577 C 3 3
184 Armenia 27578 A 3 3
185 Armenia 27579 A 3 3
186 Armenia 27580 T 3 3
187 Armenia 27581 T 3 3
188 Armenia 27582 T 3 3
189 Armenia 27583 G 3 3
190 Armenia 27584 C 3 3
191 Armenia 27585 T 3 3
192 Armenia 27586 T 3 3
193 Armenia 27587 T 3 3
194 Armenia 27588 T 3 3
195 Armenia 27589 G 3 3
196 Armenia 27590 C 3 3
197 Armenia 27591 T 3 3
198 Armenia 27592 T 3 3
199 Armenia 27593 G 3 3
200 Armenia 27594 T 3 3
201 Armenia 27595 C 3 3
202 Armenia 27596 C 3 3
203 Armenia 27597 T 3 3
204 Armenia 27598 G 3 3
205 Armenia 27599 A 3 3
206 Armenia 27600 C 3 3
207 Armenia 27601 G 3 3
208 Armenia 27602 G 3 3
209 Armenia 27603 C 3 3
210 Armenia 27604 G 3 3
211 Armenia 27605 T 3 3
212 Armenia 27606 A 3 3
213 Armenia 27607 A 3 3
214 Armenia 27608 A 3 3
215 Armenia 27609 A 3 3
216 Armenia 27610 C 3 3
217 Armenia 27611 A 3 3
218 Armenia 27612 C 3 3
219 Armenia 27613 G 3 3
220 Armenia 27614 T 3 3
221 Armenia 27615 C 3 3
222 Armenia 27616 T 3 3
223 Armenia 27617 A 3 3
224 Armenia 27618 T 3 3
225 Armenia 27619 C 3 3
226 Armenia 27620 A 3 3
227 Armenia 27621 G 3 3
228 Armenia 27622 T 3 3
229 Armenia 27623 T 3 3
230 Armenia 27624 A 3 3
231 Armenia 27625 C 3 3
232 Armenia 27626 G 3 3
233 Armenia 27627 T 3 3
234 Armenia 27628 G 3 3
235 Armenia 27629 C 3 3
236 Armenia 27630 C 3 3
237 Armenia 27631 A 3 3
238 Armenia 27632 G 3 3
239 Armenia 27633 A 3 3
240 Armenia 27634 T 3 3
241 Armenia 27635 C 3 3
242 Armenia 27636 A 3 3
243 Armenia 27637 G 3 3
244 Armenia 27638 T 3 3
245 Armenia 27639 T 3 3
246 Armenia 27640 T 3 3
247 Armenia 27641 C 3 3
248 Armenia 27642 A 3 3
249 Armenia 27643 C 3 3
250 Armenia 27644 C 3 3
251 Armenia 27645 T 3 3
252 Armenia 27646 A 3 3
253 Armenia 27647 A 3 3
254 Armenia 27648 A 3 3
255 Armenia 27649 C 3 3
256 Armenia 27650 T 3 3
257 Armenia 27651 G 3 3
258 Armenia 27652 T 3 3
259 Armenia 27653 T 3 3
260 Armenia 27654 C 3 3
261 Armenia 27655 A 3 3
262 Armenia 27656 T 3 3
263 Armenia 27657 C 3 3
264 Armenia 27658 A 3 3
265 Armenia 27659 G 3 3
266 Armenia 27660 A 3 3
267 Armenia 27661 C 3 3
268 Armenia 27662 A 3 3
269 Armenia 27663 A 3 3
270 Armenia 27664 G 3 3
271 Armenia 27665 A 3 3
272 Armenia 27666 G 3 3
273 Armenia 27667 G 3 3
274 Armenia 27668 A 3 3
275 Armenia 27669 A 3 3
276 Armenia 27670 G 3 3
277 Armenia 27671 T 3 3
278 Armenia 27672 T 3 3
279 Armenia 27673 C 3 3
280 Armenia 27674 A 3 3
281 Armenia 27675 A 3 3
282 Armenia 27676 G 3 3
283 Armenia 27677 A 3 3
284 Armenia 27678 A 3 3
285 Armenia 27679 C 3 3
286 Armenia 27680 T 3 3
287 Armenia 27681 T 3 3
288 Armenia 27682 T 3 3
289 Armenia 27683 A 3 3
290 Armenia 27684 C 3 3
291 Armenia 27685 T 3 3
292 Armenia 27686 C 3 3
293 Armenia 27687 T 3 3
294 Armenia 27688 C 3 3
295 Armenia 27689 C 3 3
296 Armenia 27690 A 3 3
297 Armenia 27691 A 3 3
298 Armenia 27692 T 3 3
299 Armenia 27693 T 3 3
300 Armenia 27694 T 3 3
301 Armenia 27695 T 3 3
302 Armenia 27696 T 3 3
303 Armenia 27697 C 3 3
304 Armenia 27698 T 3 3
305 Armenia 27699 T 3 3
306 Armenia 27700 A 3 3
307 Armenia 27701 T 3 3
308 Armenia 27702 T 3 3
309 Armenia 27703 G 3 3
310 Armenia 27704 T 3 3
311 Armenia 27705 T 3 3
312 Armenia 27706 G 3 3
313 Armenia 27707 C 3 3
314 Armenia 27708 G 3 3
315 Armenia 27709 G 3 3
316 Armenia 27710 C 3 3
317 Armenia 27711 A 3 3
318 Armenia 27712 A 3 3
319 Armenia 27713 T 3 3
320 Armenia 27714 A 3 3
321 Armenia 27715 G 3 3
322 Armenia 27716 T 3 3
323 Armenia 27717 G 3 3
324 Armenia 27718 T 3 3
325 Armenia 27719 T 3 3
326 Armenia 27720 T 3 3
327 Armenia 27721 A 3 3
328 Armenia 27722 T 3 3
329 Armenia 27723 A 3 3
330 Armenia 27724 A 3 3
331 Armenia 27725 C 3 3
332 Armenia 27726 A 3 3
333 Armenia 27727 C 3 3
334 Armenia 27728 T 3 3
335 Armenia 27729 T 3 3
336 Armenia 27730 T 3 3
337 Armenia 27731 G 3 3
338 Armenia 27732 C 3 3
339 Armenia 27733 T 3 3
340 Armenia 27734 T 3 3
341 Armenia 27735 C 3 3
342 Armenia 27736 A 3 3
343 Armenia 27737 C 3 3
344 Armenia 27738 A 3 3
345 Armenia 27739 C 3 3
346 Armenia 27740 T 3 3
347 Armenia 27741 C 3 3
348 Armenia 27742 A 3 3
349 Armenia 27743 A 3 3
350 Armenia 27744 A 3 3
351 Armenia 27745 A 3 3
352 Armenia 27746 G 3 3
353 Armenia 27747 A 3 3
354 Armenia 27748 A 3 3
355 Armenia 27749 A 3 3
356 Armenia 27750 G 3 3
357 Armenia 27751 A 3 3
358 Armenia 27752 C 3 3
359 Armenia 27753 A 3 3
360 Armenia 27754 G 3 3
361 Armenia 27755 A 3 3
362 Armenia 27756 A 3 3
363 Armenia 27757 T 3 3
364 Armenia 27758 G 3 3
365 Armenia 27759 A 3 3