National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V Y
*     3                                      
-     370                                      
?                                            
A     27                                      
C     18                                      
D     6                                      
E     24                                      
F     30                                      
G     12                                      
H     9                                      
I     25                                      
K     21                                      
L     45                                      
M     6                                      
N     6                                      
P     18                                      
Q     15                                      
R     15                                      
S     21                                      
T     30                                      
V     24                                      
Y     15                                      

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Albania 27394 A 1 1
1 Albania 27395 T 1 1
2 Albania 27396 G 1 1
3 Albania 27397 A 1 1
4 Albania 27398 A 1 1
5 Albania 27399 A 1 1
6 Albania 27400 A 1 1
7 Albania 27401 T 1 1
8 Albania 27402 T 1 1
9 Albania 27403 A 1 1
10 Albania 27404 T 1 1
11 Albania 27405 T 1 1
12 Albania 27406 C 1 1
13 Albania 27407 T 1 1
14 Albania 27408 T 1 1
15 Albania 27409 T 1 1
16 Albania 27410 T 1 1
17 Albania 27411 C 1 1
18 Albania 27412 T 1 1
19 Albania 27413 T 1 1
20 Albania 27414 G 1 1
21 Albania 27415 G 1 1
22 Albania 27416 C 1 1
23 Albania 27417 A 1 1
24 Albania 27418 C 1 1
25 Albania 27419 T 1 1
26 Albania 27420 G 1 1
27 Albania 27421 A 1 1
28 Albania 27422 T 1 1
29 Albania 27423 A 1 1
30 Albania 27424 A 1 1
31 Albania 27425 C 1 1
32 Albania 27426 A 1 1
33 Albania 27427 C 1 1
34 Albania 27428 T 1 1
35 Albania 27429 C 1 1
36 Albania 27430 G 1 1
37 Albania 27431 C 1 1
38 Albania 27432 T 1 1
39 Albania 27433 A 1 1
40 Albania 27434 C 1 1
41 Albania 27435 T 1 1
42 Albania 27436 T 1 1
43 Albania 27437 G 1 1
44 Albania 27438 T 1 1
45 Albania 27439 G 1 1
46 Albania 27440 A 1 1
47 Albania 27441 G 1 1
48 Albania 27442 C 1 1
49 Albania 27443 T 1 1
50 Albania 27444 T 1 1
51 Albania 27445 T 1 1
52 Albania 27446 A 1 1
53 Albania 27447 T 1 1
54 Albania 27448 C 1 1
55 Albania 27449 A 1 1
56 Albania 27450 C 1 1
57 Albania 27451 T 1 1
58 Albania 27452 A 1 1
59 Albania 27453 C 1 1
60 Albania 27454 C 1 1
61 Albania 27455 A 1 1
62 Albania 27456 A 1 1
63 Albania 27457 G 1 1
64 Albania 27458 A 1 1
65 Albania 27459 G 1 1
66 Albania 27460 T 1 1
67 Albania 27461 G 1 1
68 Albania 27462 T 1 1
69 Albania 27463 G 1 1
70 Albania 27464 T 1 1
71 Albania 27465 T 1 1
72 Albania 27466 A 1 1
73 Albania 27467 G 1 1
74 Albania 27468 A 1 1
75 Albania 27469 G 1 1
76 Albania 27470 G 1 1
77 Albania 27471 T 1 1
78 Albania 27472 A 1 1
79 Albania 27473 C 1 1
80 Albania 27474 A 1 1
81 Albania 27475 A 1 1
82 Albania 27476 C 1 1
83 Albania 27477 A 1 1
84 Albania 27478 G 1 1
85 Albania 27479 T 1 1
86 Albania 27480 A 1 1
87 Albania 27481 C 1 1
88 Albania 27482 T 1 1
89 Albania 27483 T 1 1
90 Albania 27484 T 1 1
91 Albania 27485 T 1 1
92 Albania 27486 A 1 1
93 Albania 27487 A 1 1
94 Albania 27488 A 1 1
95 Albania 27489 A 1 1
96 Albania 27490 G 1 1
97 Albania 27491 A 1 1
98 Albania 27492 A 1 1
99 Albania 27493 C 1 1
100 Albania 27494 C 1 1
101 Albania 27495 T 1 1
102 Albania 27496 T 1 1
103 Albania 27497 G 1 1
104 Albania 27498 C 1 1
105 Albania 27499 T 1 1
106 Albania 27500 C 1 1
107 Albania 27501 T 1 1
108 Albania 27502 T 1 1
109 Albania 27503 C 1 1
110 Albania 27504 T 1 1
111 Albania 27505 G 1 1
112 Albania 27506 G 1 1
113 Albania 27507 A 1 1
114 Albania 27508 A 1 1
115 Albania 27509 C 1 1
116 Albania 27510 A 1 1
117 Albania 27511 T 1 1
118 Albania 27512 A 1 1
119 Albania 27513 C 1 1
120 Albania 27514 G 1 1
121 Albania 27515 A 1 1
122 Albania 27516 G 1 1
123 Albania 27517 G 1 1
124 Albania 27518 G 1 1
125 Albania 27519 C 1 1
126 Albania 27520 A 1 1
127 Albania 27521 A 1 1
128 Albania 27522 T 1 1
129 Albania 27523 T 1 1
130 Albania 27524 C 1 1
131 Albania 27525 A 1 1
132 Albania 27526 C 1 1
133 Albania 27527 C 1 1
134 Albania 27528 A 1 1
135 Albania 27529 T 1 1
136 Albania 27530 T 1 1
137 Albania 27531 T 1 1
138 Albania 27532 C 1 1
139 Albania 27533 A 1 1
140 Albania 27534 T 1 1
141 Albania 27535 C 1 1
142 Albania 27536 C 1 1
143 Albania 27537 T 1 1
144 Albania 27538 C 1 1
145 Albania 27539 T 1 1
146 Albania 27540 A 1 1
147 Albania 27541 G 1 1
148 Albania 27542 C 1 1
149 Albania 27543 T 1 1
150 Albania 27544 G 1 1
151 Albania 27545 A 1 1
152 Albania 27546 T 1 1
153 Albania 27547 A 1 1
154 Albania 27548 A 1 1
155 Albania 27549 C 1 1
156 Albania 27550 A 1 1
157 Albania 27551 A 1 1
158 Albania 27552 A 1 1
159 Albania 27553 T 1 1
160 Albania 27554 T 1 1
161 Albania 27555 T 1 1
162 Albania 27556 G 1 1
163 Albania 27557 C 1 1
164 Albania 27558 A 1 1
165 Albania 27559 C 1 1
166 Albania 27560 T 1 1
167 Albania 27561 G 1 1
168 Albania 27562 A 1 1
169 Albania 27563 C 1 1
170 Albania 27564 T 1 1
171 Albania 27565 T 1 1
172 Albania 27566 G 1 1
173 Albania 27567 C 1 1
174 Albania 27568 T 1 1
175 Albania 27569 T 1 1
176 Albania 27570 T 1 1
177 Albania 27571 A 1 1
178 Albania 27572 G 1 1
179 Albania 27573 C 1 1
180 Albania 27574 A 1 1
181 Albania 27575 C 1 1
182 Albania 27576 T 1 1
183 Albania 27577 C 1 1
184 Albania 27578 A 1 1
185 Albania 27579 A 1 1
186 Albania 27580 T 1 1
187 Albania 27581 T 1 1
188 Albania 27582 T 1 1
189 Albania 27583 G 1 1
190 Albania 27584 C 1 1
191 Albania 27585 T 1 1
192 Albania 27586 T 1 1
193 Albania 27587 T 1 1
194 Albania 27588 T 1 1
195 Albania 27589 G 1 1
196 Albania 27590 C 1 1
197 Albania 27591 T 1 1
198 Albania 27592 T 1 1
199 Albania 27593 G 1 1
200 Albania 27594 T 1 1
201 Albania 27595 C 1 1
202 Albania 27596 C 1 1
203 Albania 27597 T 1 1
204 Albania 27598 G 1 1
205 Albania 27599 A 1 1
206 Albania 27600 C 1 1
207 Albania 27601 G 1 1
208 Albania 27602 G 1 1
209 Albania 27603 C 1 1
210 Albania 27604 G 1 1
211 Albania 27605 T 1 1
212 Albania 27606 A 1 1
213 Albania 27607 A 1 1
214 Albania 27608 A 1 1
215 Albania 27609 A 1 1
216 Albania 27610 C 1 1
217 Albania 27611 A 1 1
218 Albania 27612 C 1 1
219 Albania 27613 G 1 1
220 Albania 27614 T 1 1
221 Albania 27615 C 1 1
222 Albania 27616 T 1 1
223 Albania 27617 A 1 1
224 Albania 27618 T 1 1
225 Albania 27619 C 1 1
226 Albania 27620 A 1 1
227 Albania 27621 G 1 1
228 Albania 27622 T 1 1
229 Albania 27623 T 1 1
230 Albania 27624 A 1 1
231 Albania 27625 C 1 1
232 Albania 27626 G 1 1
233 Albania 27627 T 1 1
234 Albania 27628 G 1 1
235 Albania 27629 C 1 1
236 Albania 27630 C 1 1
237 Albania 27631 A 1 1
238 Albania 27632 G 1 1
239 Albania 27633 A 1 1
240 Albania 27634 T 1 1
241 Albania 27635 C 1 1
242 Albania 27636 A 1 1
243 Albania 27637 G 1 1
244 Albania 27638 T 1 1
245 Albania 27639 T 1 1
246 Albania 27640 T 1 1
247 Albania 27641 C 1 1
248 Albania 27642 A 1 1
249 Albania 27643 C 1 1
250 Albania 27644 C 1 1
251 Albania 27645 T 1 1
252 Albania 27646 A 1 1
253 Albania 27647 A 1 1
254 Albania 27648 A 1 1
255 Albania 27649 C 1 1
256 Albania 27650 T 1 1
257 Albania 27651 G 1 1
258 Albania 27652 T 1 1
259 Albania 27653 T 1 1
260 Albania 27654 C 1 1
261 Albania 27655 A 1 1
262 Albania 27656 T 1 1
263 Albania 27657 C 1 1
264 Albania 27658 A 1 1
265 Albania 27659 G 1 1
266 Albania 27660 A 1 1
267 Albania 27661 C 1 1
268 Albania 27662 A 1 1
269 Albania 27663 A 1 1
270 Albania 27664 G 1 1
271 Albania 27665 A 1 1
272 Albania 27666 G 1 1
273 Albania 27667 G 1 1
274 Albania 27668 A 1 1
275 Albania 27669 A 1 1
276 Albania 27670 G 1 1
277 Albania 27671 T 1 1
278 Albania 27672 T 1 1
279 Albania 27673 C 1 1
280 Albania 27674 A 1 1
281 Albania 27675 A 1 1
282 Albania 27676 G 1 1
283 Albania 27677 A 1 1
284 Albania 27678 A 1 1
285 Albania 27679 C 1 1
286 Albania 27680 T 1 1
287 Albania 27681 T 1 1
288 Albania 27682 T 1 1
289 Albania 27683 A 1 1
290 Albania 27684 C 1 1
291 Albania 27685 T 1 1
292 Albania 27686 C 1 1
293 Albania 27687 T 1 1
294 Albania 27688 C 1 1
295 Albania 27689 C 1 1
296 Albania 27690 A 1 1
297 Albania 27691 A 1 1
298 Albania 27692 T 1 1
299 Albania 27693 T 1 1
300 Albania 27694 T 1 1
301 Albania 27695 T 1 1
302 Albania 27696 T 1 1
303 Albania 27697 C 1 1
304 Albania 27698 T 1 1
305 Albania 27699 T 1 1
306 Albania 27700 A 1 1
307 Albania 27701 T 1 1
308 Albania 27702 T 1 1
309 Albania 27703 G 1 1
310 Albania 27704 T 1 1
311 Albania 27705 T 1 1
312 Albania 27706 G 1 1
313 Albania 27707 C 1 1
314 Albania 27708 G 1 1
315 Albania 27709 G 1 1
316 Albania 27710 C 1 1
317 Albania 27711 A 1 1
318 Albania 27712 A 1 1
319 Albania 27713 T 1 1
320 Albania 27714 A 1 1
321 Albania 27715 G 1 1
322 Albania 27716 T 1 1
323 Albania 27717 G 1 1
324 Albania 27718 T 1 1
325 Albania 27719 T 1 1
326 Albania 27720 T 1 1
327 Albania 27721 A 1 1
328 Albania 27722 T 1 1
329 Albania 27723 A 1 1
330 Albania 27724 A 1 1
331 Albania 27725 C 1 1
332 Albania 27726 A 1 1
333 Albania 27727 C 1 1
334 Albania 27728 T 1 1
335 Albania 27729 T 1 1
336 Albania 27730 T 1 1
337 Albania 27731 G 1 1
338 Albania 27732 C 1 1
339 Albania 27733 T 1 1
340 Albania 27734 T 1 1
341 Albania 27735 C 1 1
342 Albania 27736 A 1 1
343 Albania 27737 C 1 1
344 Albania 27738 A 1 1
345 Albania 27739 C 1 1
346 Albania 27740 T 1 1
347 Albania 27741 C 1 1
348 Albania 27742 A 1 1
349 Albania 27743 A 1 1
350 Albania 27744 A 1 1
351 Albania 27745 A 1 1
352 Albania 27746 G 1 1
353 Albania 27747 A 1 1
354 Albania 27748 A 1 1
355 Albania 27749 A 1 1
356 Albania 27750 G 1 1
357 Albania 27751 A 1 1
358 Albania 27752 C 1 1
359 Albania 27753 A 1 1
360 Albania 27754 G 1 1
361 Albania 27755 A 1 1
362 Albania 27756 A 1 1
363 Albania 27757 T 1 1
364 Albania 27758 G 1 1
365 Albania 27759 A 1 1