National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     828                                        
?                                              
A     39 4                             5   2    
C 2   21   4     1                              
D     39 1   1     1 2                         4
E 1   33 1     1   2     3                      
F     42         4     1   2                    
G 1   42   5 3     2                 3 2   4    
H     24             2               1         5
I     63         1     7     2 1         2 1    
K     33                       4                
L     90         10         12                    
M     12               2 1                      
N     24     1           1     3       1       1
P     36             1     4     1     5 1      
Q 1   27             1   1 1       1            
R     18   1       1   1 2             1        
S     66   1     2         3     1     7        
T     72               8                 4      
V     76 2       5     2   7               4    
W     18   2               3         1          
Y     51   1         2                         4

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Africa 25393 A 2651 2651
1 South_Africa 25394 T 2651 2651
2 South_Africa 25395 G 2651 2651
3 South_Africa 25396 G 2651 2651
4 South_Africa 25397 A 2651 2651
5 South_Africa 25398 T 2651 2651
6 South_Africa 25399 T 2651 2651
7 South_Africa 25400 T 2651 2651
8 South_Africa 25401 G 2651 2651
9 South_Africa 25402 T 2651 2651
10 South_Africa 25403 T 2651 2651
11 South_Africa 25404 T 2651 2651
12 South_Africa 25405 A 2651 2651
13 South_Africa 25406 T 2651 2651
14 South_Africa 25407 G 2651 2651
15 South_Africa 25408 A 2651 2651
16 South_Africa 25409 G A 2651 2647 Arg6Lys
17 South_Africa 25410 A 2651 2651
18 South_Africa 25411 A 2651 2651
19 South_Africa 25412 T 2651 2651
20 South_Africa 25413 C T,A 2651 2646 Ile7Ile-p.Ile7Ile
21 South_Africa 25414 T 2651 2651
22 South_Africa 25415 T 2651 2651
23 South_Africa 25416 C T 2651 2644 Phe8Phe
24 South_Africa 25417 A 2651 2651
25 South_Africa 25418 C 2651 2651
26 South_Africa 25419 A 2651 2651
27 South_Africa 25420 A 2651 2651
28 South_Africa 25421 T 2651 2651
29 South_Africa 25422 T 2651 2651
30 South_Africa 25423 G 2651 2651
31 South_Africa 25424 G 2651 2651
32 South_Africa 25425 A 2651 2651
33 South_Africa 25426 A 2651 2651
34 South_Africa 25427 C T 2651 2642 Thr12Ile
35 South_Africa 25428 T 2652 2652
36 South_Africa 25429 G T 2652 2650 Val13Leu
37 South_Africa 25430 T 2652 2652
38 South_Africa 25431 A 2652 2652
39 South_Africa 25432 A 2652 2652
40 South_Africa 25433 C 2652 2652
41 South_Africa 25434 T 2652 2652
42 South_Africa 25435 T 2652 2652
43 South_Africa 25436 T 2652 2652
44 South_Africa 25437 G T 2652 2646 Leu15Phe
45 South_Africa 25438 A 2652 2652
46 South_Africa 25439 A 2652 2652
47 South_Africa 25440 G T 2652 2651 Lys16Asn
48 South_Africa 25441 C 2652 2652
49 South_Africa 25442 A 2652 2652
50 South_Africa 25443 A 2652 2652
51 South_Africa 25444 G C 2652 2651 Gly18Arg
52 South_Africa 25445 G 2652 2652
53 South_Africa 25446 T 2652 2652
54 South_Africa 25447 G 2652 2652
55 South_Africa 25448 A 2652 2652
56 South_Africa 25449 A 2652 2652
57 South_Africa 25450 A 2652 2652
58 South_Africa 25451 T C 2652 2645 Ile20Thr
59 South_Africa 25452 C T,G 2652 2650 Ile20Met-p.Ile20Ile
60 South_Africa 25453 A 2652 2652
61 South_Africa 25454 A 2652 2652
62 South_Africa 25455 G T 2652 2572 Lys21Asn
63 South_Africa 25456 G T 2652 2650 Asp22Tyr
64 South_Africa 25457 A 2652 2652
65 South_Africa 25458 T 2652 2652
66 South_Africa 25459 G T 2652 2651 Ala23Ser
67 South_Africa 25460 C 2652 2652
68 South_Africa 25461 T C 2652 2651 Ala23Ala
69 South_Africa 25462 A 2652 2652
70 South_Africa 25463 C 2652 2652
71 South_Africa 25464 T 2652 2652
72 South_Africa 25465 C 2652 2652
73 South_Africa 25466 C 2652 2652
74 South_Africa 25467 T 2652 2652
75 South_Africa 25468 T 2652 2652
76 South_Africa 25469 C 2652 2652
77 South_Africa 25470 A 2652 2652
78 South_Africa 25471 G C 2652 2650 Asp27His
79 South_Africa 25472 A 2652 2652
80 South_Africa 25473 T 2652 2652
81 South_Africa 25474 T 2652 2651
82 South_Africa 25475 T 2652 2651
83 South_Africa 25476 T 2652 2651
84 South_Africa 25477 G 2652 2651
85 South_Africa 25478 T 2652 2651
86 South_Africa 25479 T 2652 2651
87 South_Africa 25480 C 2652 2651
88 South_Africa 25481 G 2652 2651
89 South_Africa 25482 C 2652 2651
90 South_Africa 25483 G 2652 2651
91 South_Africa 25484 C 2652 2651
92 South_Africa 25485 T C 2652 2650 Ala31Ala
93 South_Africa 25486 A 2652 2652
94 South_Africa 25487 C T 2652 2647 Thr32Ile
95 South_Africa 25488 T 2652 2652
96 South_Africa 25489 G 2652 2652
97 South_Africa 25490 C 2652 2652
98 South_Africa 25491 A T 2652 2650 Ala33Ala
99 South_Africa 25492 A 2652 2652
100 South_Africa 25493 C 2652 2652
101 South_Africa 25494 G 2652 2652
102 South_Africa 25495 A G 2652 2651 Ile35Val
103 South_Africa 25496 T 2652 2652
104 South_Africa 25497 A G 2652 2651 Ile35Met
105 South_Africa 25498 C 2652 2652
106 South_Africa 25499 C 2652 2652
107 South_Africa 25500 G 2652 2652
108 South_Africa 25501 A 2652 2652
109 South_Africa 25502 T 2652 2652
110 South_Africa 25503 A 2652 2652
111 South_Africa 25504 C 2652 2652
112 South_Africa 25505 A T 2652 2633 Gln38Leu
113 South_Africa 25506 A 2652 2652
114 South_Africa 25507 G 2652 2652
115 South_Africa 25508 C 2652 2652
116 South_Africa 25509 C T 2652 2651 Ala39Ala
117 South_Africa 25510 T 2652 2652
118 South_Africa 25511 C T 2652 2645 Ser40Leu
119 South_Africa 25512 A 2652 2652
120 South_Africa 25513 C 2652 2652
121 South_Africa 25514 T 2652 2652
122 South_Africa 25515 C 2652 2652
123 South_Africa 25516 C T 2652 2651 Pro42Ser
124 South_Africa 25517 C T 2652 2650 Pro42Leu
125 South_Africa 25518 T 2652 2652
126 South_Africa 25519 T 2652 2652
127 South_Africa 25520 T 2652 2652
128 South_Africa 25521 C T 2652 2577 Phe43Phe
129 South_Africa 25522 G 2652 2652
130 South_Africa 25523 G T 2652 2650 Gly44Val
131 South_Africa 25524 A 2652 2652
132 South_Africa 25525 T A 2652 2650 Trp45Arg
133 South_Africa 25526 G 2652 2652
134 South_Africa 25527 G 2652 2652
135 South_Africa 25528 C 2652 2652
136 South_Africa 25529 T 2652 2652
137 South_Africa 25530 T 2652 2652
138 South_Africa 25531 A 2652 2652
139 South_Africa 25532 T 2652 2652
140 South_Africa 25533 T 2652 2652
141 South_Africa 25534 G 2652 2652
142 South_Africa 25535 T 2652 2652
143 South_Africa 25536 T 2652 2652
144 South_Africa 25537 G A 2652 2649 Gly49Ser
145 South_Africa 25538 G 2652 2652
146 South_Africa 25539 C 2652 2652
147 South_Africa 25540 G 2652 2652
148 South_Africa 25541 T 2652 2652
149 South_Africa 25542 T 2652 2652
150 South_Africa 25543 G 2652 2652
151 South_Africa 25544 C 2652 2652
152 South_Africa 25545 A 2652 2652
153 South_Africa 25546 C T 2652 2647 Leu52Phe
154 South_Africa 25547 T 2652 2652
155 South_Africa 25548 T C 2652 2651 Leu52Leu
156 South_Africa 25549 C T 2652 2651 Leu53Phe
157 South_Africa 25550 T 2652 2652
158 South_Africa 25551 T 2652 2652
159 South_Africa 25552 G T 2652 2644 Ala54Ser
160 South_Africa 25553 C T 2652 2648 Ala54Val
161 South_Africa 25554 T 2652 2651
162 South_Africa 25555 G T,C 2652 2645 Val55Phe-p.Val55Leu
163 South_Africa 25556 T 2652 2651
164 South_Africa 25557 T 2652 2651
165 South_Africa 25558 T 2652 2651
166 South_Africa 25559 T 2652 2651
167 South_Africa 25560 T 2652 2651
168 South_Africa 25561 C T 2652 2650 Gln57*
169 South_Africa 25562 A 2652 2651
170 South_Africa 25563 G T,A 2652 2147 Gln57His-p.Gln57Gln
171 South_Africa 25564 A 2652 2651
172 South_Africa 25565 G 2652 2651
173 South_Africa 25566 C T 2652 2647 Ser58Ser
174 South_Africa 25567 G 2652 2651
175 South_Africa 25568 C 2652 2651
176 South_Africa 25569 T 2652 2651
177 South_Africa 25570 T 2652 2651
178 South_Africa 25571 C T 2652 2649 Ser60Phe
179 South_Africa 25572 C T 2652 2649 Ser60Ser
180 South_Africa 25573 A 2652 2651
181 South_Africa 25574 A 2652 2651
182 South_Africa 25575 A 2652 2651
183 South_Africa 25576 A 2652 2651
184 South_Africa 25577 T 2652 2651
185 South_Africa 25578 C T 2652 2650 Ile62Ile
186 South_Africa 25579 A 2652 2652
187 South_Africa 25580 T 2652 2652
188 South_Africa 25581 A 2652 2652
189 South_Africa 25582 A 2652 2652
190 South_Africa 25583 C 2652 2652
191 South_Africa 25584 C T 2652 2650 Thr64Thr
192 South_Africa 25585 C 2652 2652
193 South_Africa 25586 T 2652 2652
194 South_Africa 25587 C T,A 2652 2649 Leu65Leu-p.Leu65Leu
195 South_Africa 25588 A 2652 2652
196 South_Africa 25589 A 2652 2652
197 South_Africa 25590 A T 2652 2651 Lys66Asn
198 South_Africa 25591 A 2652 2652
199 South_Africa 25592 A 2652 2652
200 South_Africa 25593 G T 2652 2651 Lys67Asn
201 South_Africa 25594 A 2652 2652
202 South_Africa 25595 G T 2652 2651 Arg68Ile
203 South_Africa 25596 A 2652 2652
204 South_Africa 25597 T 2652 2652
205 South_Africa 25598 G T 2652 2651 Trp69Leu
206 South_Africa 25599 G T 2652 2649 Trp69Cys
207 South_Africa 25600 C 2652 2651
208 South_Africa 25601 A 2652 2651
209 South_Africa 25602 A 2652 2651
210 South_Africa 25603 C T 2652 2649 Leu71Leu
211 South_Africa 25604 T 2652 2651
212 South_Africa 25605 A 2652 2649
213 South_Africa 25606 G T 2652 2642 Ala72Ser
214 South_Africa 25607 C 2652 2649
215 South_Africa 25608 A 2652 2649
216 South_Africa 25609 C 2652 2649
217 South_Africa 25610 T 2652 2649
218 South_Africa 25611 C T 2655 2653 Leu73Leu
219 South_Africa 25612 T 2655 2654
220 South_Africa 25613 C T 2655 2650 Ser74Phe
221 South_Africa 25614 C T 2655 2649 Ser74Ser
222 South_Africa 25615 A 2656 2655
223 South_Africa 25616 A 2656 2655
224 South_Africa 25617 G 2656 2656
225 South_Africa 25618 G 2656 2656
226 South_Africa 25619 G 2656 2656
227 South_Africa 25620 T 2656 2656
228 South_Africa 25621 G T 2656 2653 Val77Phe
229 South_Africa 25622 T 2656 2656
230 South_Africa 25623 T 2656 2656
231 South_Africa 25624 C T 2656 2655 His78Tyr
232 South_Africa 25625 A 2656 2656
233 South_Africa 25626 C T 2656 2650 His78His
234 South_Africa 25627 T 2656 2656
235 South_Africa 25628 T 2656 2656
236 South_Africa 25629 T 2656 2656
237 South_Africa 25630 G A 2656 2655 Val80Ile
238 South_Africa 25631 T 2656 2656
239 South_Africa 25632 T 2656 2656
240 South_Africa 25633 T 2657 2657
241 South_Africa 25634 G T 2657 2656 Cys81Phe
242 South_Africa 25635 C T,A 2657 2647 Cys81*-p.Cys81Cys
243 South_Africa 25636 A 2657 2657
244 South_Africa 25637 A 2657 2657
245 South_Africa 25638 C T 2657 2656 Asn82Asn
246 South_Africa 25639 T 2657 2657
247 South_Africa 25640 T 2657 2657
248 South_Africa 25641 G T 2657 2656 Leu83Phe
249 South_Africa 25642 C 2657 2657
250 South_Africa 25643 T 2657 2657
251 South_Africa 25644 G T,C 2657 2645 Leu84Leu-p.Leu84Leu
252 South_Africa 25645 T 2657 2657
253 South_Africa 25646 T 2657 2657
254 South_Africa 25647 G T,A 2657 2655 Leu85Phe-p.Leu85Leu
255 South_Africa 25648 T 2657 2657
256 South_Africa 25649 T 2657 2657
257 South_Africa 25650 G A 2657 2656 Leu86Leu
258 South_Africa 25651 T 2657 2657
259 South_Africa 25652 T 2657 2657
260 South_Africa 25653 T C 2657 2654 Phe87Phe
261 South_Africa 25654 G T 2657 2655 Val88Leu
262 South_Africa 25655 T C 2657 2656 Val88Ala
263 South_Africa 25656 A 2657 2657
264 South_Africa 25657 A 2657 2657
265 South_Africa 25658 C 2657 2657
266 South_Africa 25659 A 2657 2657
267 South_Africa 25660 G T 2657 2656 Val90Phe
268 South_Africa 25661 T 2656 2656
269 South_Africa 25662 T 2656 2655
270 South_Africa 25663 T 2655 2654
271 South_Africa 25664 A 2655 2654
272 South_Africa 25665 C 2655 2654
273 South_Africa 25666 T C 2655 2653 Ser92Pro
274 South_Africa 25667 C 2653 2652
275 South_Africa 25668 A 2651 2639
276 South_Africa 25669 C 2651 2639
277 South_Africa 25670 A 2651 2637
278 South_Africa 25671 C 2651 2637
279 South_Africa 25672 C T 2651 2635 Leu94Phe
280 South_Africa 25673 T 2651 2636
281 South_Africa 25674 T 2651 2634
282 South_Africa 25675 T 2651 2634
283 South_Africa 25676 T 2651 2633
284 South_Africa 25677 G 2651 2633
285 South_Africa 25678 C 2651 2633
286 South_Africa 25679 T 2651 2634
287 South_Africa 25680 C 2651 2634
288 South_Africa 25681 G 2651 2635
289 South_Africa 25682 T 2651 2636
290 South_Africa 25683 T 2651 2636
291 South_Africa 25684 G 2651 2636
292 South_Africa 25685 C 2651 2635
293 South_Africa 25686 T 2651 2639
294 South_Africa 25687 G 2651 2639
295 South_Africa 25688 C 2651 2639
296 South_Africa 25689 T 2651 2642
297 South_Africa 25690 G T 2651 2640 Gly100Cys
298 South_Africa 25691 G A 2651 2640 Gly100Asp
299 South_Africa 25692 C 2651 2642
300 South_Africa 25693 C 2651 2642
301 South_Africa 25694 T 2651 2642
302 South_Africa 25695 T G,A 2651 2640 Leu101Leu-p.Leu101Leu
303 South_Africa 25696 G A 2650 2640 Glu102Lys
304 South_Africa 25697 A 2649 2640
305 South_Africa 25698 A 2648 2638
306 South_Africa 25699 G T 2648 2637 Ala103Ser
307 South_Africa 25700 C 2648 2640
308 South_Africa 25701 C 2648 2641
309 South_Africa 25702 C T 2648 2635 Pro104Ser
310 South_Africa 25703 C T,A 2648 2638 Pro104Leu-p.Pro104His
311 South_Africa 25704 T 2647 2640
312 South_Africa 25705 T C 2647 2627 Phe105Leu
313 South_Africa 25706 T 2646 2638
314 South_Africa 25707 T 2646 2639
315 South_Africa 25708 C T 2646 2633 Leu106Phe
316 South_Africa 25709 T 2646 2639
317 South_Africa 25710 C 2646 2640
318 South_Africa 25711 T C 2646 2640 Tyr107His
319 South_Africa 25712 A 2646 2641
320 South_Africa 25713 T 2645 2640
321 South_Africa 25714 C T 2645 2636 Leu108Phe
322 South_Africa 25715 T 2645 2640
323 South_Africa 25716 T 2645 2640
324 South_Africa 25717 T 2644 2639
325 South_Africa 25718 A 2642 2637
326 South_Africa 25719 T 2641 2637
327 South_Africa 25720 G T 2641 2634 Ala110Ser
328 South_Africa 25721 C T 2639 2629 Ala110Val
329 South_Africa 25722 T 2639 2636
330 South_Africa 25723 T 2638 2635
331 South_Africa 25724 T 2637 2634
332 South_Africa 25725 A 2637 2634
333 South_Africa 25726 G T 2635 2632 Val112Phe
334 South_Africa 25727 T 2635 2633
335 South_Africa 25728 C 2635 2633
336 South_Africa 25729 T 2635 2634
337 South_Africa 25730 A 2635 2634
338 South_Africa 25731 C 2634 2632
339 South_Africa 25732 T 2634 2632
340 South_Africa 25733 T 2634 2632
341 South_Africa 25734 C 2633 2631
342 South_Africa 25735 T 2630 2628
343 South_Africa 25736 T 2629 2626
344 South_Africa 25737 G 2629 2626
345 South_Africa 25738 C 2629 2626
346 South_Africa 25739 A 2628 2625
347 South_Africa 25740 G 2630 2629
348 South_Africa 25741 A 2630 2629
349 South_Africa 25742 G 2632 2632
350 South_Africa 25743 T 2632 2631
351 South_Africa 25744 A 2632 2631
352 South_Africa 25745 T C 2632 2630 Ile118Thr
353 South_Africa 25746 A 2632 2631
354 South_Africa 25747 A 2632 2631
355 South_Africa 25748 A 2632 2631
356 South_Africa 25749 C 2632 2631
357 South_Africa 25750 T 2631 2629
358 South_Africa 25751 T 2630 2625
359 South_Africa 25752 T 2630 2625
360 South_Africa 25753 G T 2631 2616 Val121Leu
361 South_Africa 25754 T 2631 2626
362 South_Africa 25755 A 2631 2626
363 South_Africa 25756 A G 2631 2623 Arg122Gly
364 South_Africa 25757 G A 2631 2623 Arg122Lys
365 South_Africa 25758 A 2631 2624
366 South_Africa 25759 A 2631 2625
367 South_Africa 25760 T 2631 2626
368 South_Africa 25761 A 2631 2626
369 South_Africa 25762 A 2631 2626
370 South_Africa 25763 T 2631 2626
371 South_Africa 25764 A 2631 2626
372 South_Africa 25765 A 2630 2625
373 South_Africa 25766 T A 2628 2620 Met125Lys
374 South_Africa 25767 G T,A 2628 2613 Met125Ile-p.Met125Ile
375 South_Africa 25768 A 2629 2622
376 South_Africa 25769 G 2629 2623
377 South_Africa 25770 G T 2629 2267 Arg126Ser
378 South_Africa 25771 C 2629 2623
379 South_Africa 25772 T 2631 2625
380 South_Africa 25773 T 2631 2625
381 South_Africa 25774 T 2630 2624
382 South_Africa 25775 G 2630 2624
383 South_Africa 25776 G 2630 2625
384 South_Africa 25777 C 2630 2625
385 South_Africa 25778 T 2628 2623
386 South_Africa 25779 T 2627 2622
387 South_Africa 25780 T 2627 2622
388 South_Africa 25781 G 2627 2622
389 South_Africa 25782 C T 2627 2621 Cys130Cys
390 South_Africa 25783 T 2627 2622
391 South_Africa 25784 G T 2627 2600 Trp131Leu
392 South_Africa 25785 G T 2627 2622 Trp131Cys
393 South_Africa 25786 A 2628 2624
394 South_Africa 25787 A 2627 2623
395 South_Africa 25788 A 2627 2623
396 South_Africa 25789 T 2627 2623
397 South_Africa 25790 G 2625 2621
398 South_Africa 25791 C T,A 2625 2619 Cys133*-p.Cys133Cys
399 South_Africa 25792 C T 2625 2620 Arg134Cys
400 South_Africa 25793 G 2624 2620
401 South_Africa 25794 T 2625 2622
402 South_Africa 25795 T 2626 2623
403 South_Africa 25796 C 2626 2624
404 South_Africa 25797 C T 2626 2621 Ser135Ser
405 South_Africa 25798 A 2626 2624
406 South_Africa 25799 A 2628 2625
407 South_Africa 25800 A 2627 2624
408 South_Africa 25801 A 2627 2624
409 South_Africa 25802 A 2627 2627
410 South_Africa 25803 C 2627 2627
411 South_Africa 25804 C 2627 2627
412 South_Africa 25805 C 2627 2626
413 South_Africa 25806 A 2627 2626
414 South_Africa 25807 T 2626 2626
415 South_Africa 25808 T 2625 2625
416 South_Africa 25809 A 2627 2627
417 South_Africa 25810 C 2627 2627
418 South_Africa 25811 T 2627 2627
419 South_Africa 25812 T 2627 2627
420 South_Africa 25813 T 2627 2627
421 South_Africa 25814 A G 2627 2615 Tyr141Cys
422 South_Africa 25815 T 2627 2627
423 South_Africa 25816 G T 2627 2625 Asp142Tyr
424 South_Africa 25817 A 2627 2626
425 South_Africa 25818 T 2627 2624
426 South_Africa 25819 G 2627 2624
427 South_Africa 25820 C 2628 2625
428 South_Africa 25821 C 2627 2624
429 South_Africa 25822 A 2627 2625
430 South_Africa 25823 A 2627 2625
431 South_Africa 25824 C T 2627 2624 Asn144Asn
432 South_Africa 25825 T 2627 2625
433 South_Africa 25826 A 2627 2625
434 South_Africa 25827 T 2624 2621
435 South_Africa 25828 T 2624 2620
436 South_Africa 25829 T 2624 2620
437 South_Africa 25830 T 2625 2622
438 South_Africa 25831 C T 2626 2620 Leu147Phe
439 South_Africa 25832 T 2624 2619
440 South_Africa 25833 T 2624 2619
441 South_Africa 25834 T 2626 2621
442 South_Africa 25835 G 2626 2620
443 South_Africa 25836 C T 2626 2618 Cys148Cys
444 South_Africa 25837 T 2625 2617
445 South_Africa 25838 G 2625 2617
446 South_Africa 25839 G 2626 2618
447 South_Africa 25840 C 2625 2616
448 South_Africa 25841 A G 2625 2616 His150Arg
449 South_Africa 25842 T 2625 2617
450 South_Africa 25843 A 2625 2617
451 South_Africa 25844 C T 2625 2612 Thr151Ile
452 South_Africa 25845 T 2625 2617
453 South_Africa 25846 A 2625 2617
454 South_Africa 25847 A G 2625 2616 Asn152Ser
455 South_Africa 25848 T C 2625 2616 Asn152Asn
456 South_Africa 25849 T 2625 2617
457 South_Africa 25850 G 2626 2618
458 South_Africa 25851 T 2625 2615
459 South_Africa 25852 T 2625 2615
460 South_Africa 25853 A 2625 2614
461 South_Africa 25854 C T 2625 2613 Tyr154Tyr
462 South_Africa 25855 G T,C 2626 2608 Asp155Tyr-p.Asp155His
463 South_Africa 25856 A 2627 2616
464 South_Africa 25857 C 2627 2618
465 South_Africa 25858 T 2626 2617
466 South_Africa 25859 A 2629 2626
467 South_Africa 25860 T 2629 2626
468 South_Africa 25861 T 2629 2624
469 South_Africa 25862 G 2629 2619
470 South_Africa 25863 T 2629 2620
471 South_Africa 25864 A 2629 2620
472 South_Africa 25865 T 2629 2620
473 South_Africa 25866 A 2630 2621
474 South_Africa 25867 C T 2630 2621 Pro159Ser
475 South_Africa 25868 C 2630 2618
476 South_Africa 25869 T G 2630 2616 Pro159Pro
477 South_Africa 25870 T 2630 2617
478 South_Africa 25871 A 2631 2616
479 South_Africa 25872 C 2631 2617
480 South_Africa 25873 A 2631 2616
481 South_Africa 25874 A 2631 2616
482 South_Africa 25875 T 2631 2616
483 South_Africa 25876 A 2631 2606
484 South_Africa 25877 G 2632 2607
485 South_Africa 25878 T 2632 2607
486 South_Africa 25879 G T 2632 2606 Val163Leu
487 South_Africa 25880 T 2632 2607
488 South_Africa 25881 A 2632 2607
489 South_Africa 25882 A 2632 2607
490 South_Africa 25883 C 2632 2606
491 South_Africa 25884 T 2632 2605
492 South_Africa 25885 T 2632 2605
493 South_Africa 25886 C 2632 2604
494 South_Africa 25887 T 2632 2604
495 South_Africa 25888 T 2633 2607
496 South_Africa 25889 C T 2633 2606 Ser166Leu
497 South_Africa 25890 A 2635 2610
498 South_Africa 25891 A 2635 2609
499 South_Africa 25892 T 2635 2610
500 South_Africa 25893 T 2636 2611
501 South_Africa 25894 G 2636 2611
502 South_Africa 25895 T 2636 2611
503 South_Africa 25896 C 2636 2611
504 South_Africa 25897 A 2636 2611
505 South_Africa 25898 T 2636 2611
506 South_Africa 25899 T 2636 2611
507 South_Africa 25900 A 2637 2612
508 South_Africa 25901 C 2643 2618
509 South_Africa 25902 T 2647 2622
510 South_Africa 25903 T 2652 2631
511 South_Africa 25904 C T 2653 2204 Ser171Leu
512 South_Africa 25905 A 2653 2632
513 South_Africa 25906 G T 2654 2631 Gly172Cys
514 South_Africa 25907 G T 2654 2632 Gly172Val
515 South_Africa 25908 T 2800 2790
516 South_Africa 25909 G T 2802 2790 Asp173Tyr
517 South_Africa 25910 A 2815 2805
518 South_Africa 25911 T 2958 2955
519 South_Africa 25912 G T 2960 2956 Gly174Cys
520 South_Africa 25913 G A 2972 2968 Gly174Asp
521 South_Africa 25914 C G 2974 2971 Gly174Gly
522 South_Africa 25915 A 2974 2972
523 South_Africa 25916 C 2986 2985
524 South_Africa 25917 A 2987 2986
525 South_Africa 25918 A 2988 2987
526 South_Africa 25919 C T 2989 2986 Thr176Ile
527 South_Africa 25920 A 2989 2988
528 South_Africa 25921 A T 2989 2987 Ser177Cys
529 South_Africa 25922 G 2993 2992
530 South_Africa 25923 T 2996 2995
531 South_Africa 25924 C T 2996 2994 Pro178Ser
532 South_Africa 25925 C 2996 2996
533 South_Africa 25926 T 2996 2996
534 South_Africa 25927 A 2997 2997
535 South_Africa 25928 T 2998 2998
536 South_Africa 25929 T 2998 2998
537 South_Africa 25930 T 2998 2998
538 South_Africa 25931 C 2998 2998
539 South_Africa 25932 T 2998 2998
540 South_Africa 25933 G 3000 3000
541 South_Africa 25934 A 3001 3001
542 South_Africa 25935 A 3001 3001
543 South_Africa 25936 C T 3002 3000 His182Tyr
544 South_Africa 25937 A 3002 3002
545 South_Africa 25938 T 3001 3001
546 South_Africa 25939 G 3002 3002
547 South_Africa 25940 A 3002 3002
548 South_Africa 25941 C 3002 3002
549 South_Africa 25942 T C 3002 3001 Tyr184His
550 South_Africa 25943 A 3002 3002
551 South_Africa 25944 C 3002 3002
552 South_Africa 25945 C 3002 3002
553 South_Africa 25946 A 3002 3002
554 South_Africa 25947 G 3002 3002
555 South_Africa 25948 A 3002 3002
556 South_Africa 25949 T 3002 3002
557 South_Africa 25950 T 3002 3002
558 South_Africa 25951 G A 3002 3000 Gly187Ser
559 South_Africa 25952 G 3002 3002
560 South_Africa 25953 T 3002 3002
561 South_Africa 25954 G T 3002 3001 Gly188Cys
562 South_Africa 25955 G 3002 3002
563 South_Africa 25956 T 3002 3002
564 South_Africa 25957 T 3002 3002
565 South_Africa 25958 A 3002 3002
566 South_Africa 25959 T 3002 3002
567 South_Africa 25960 A 3002 3002
568 South_Africa 25961 C 3002 3002
569 South_Africa 25962 T 3002 3002
570 South_Africa 25963 G 3002 3002
571 South_Africa 25964 A C 3002 2995 Glu191Ala
572 South_Africa 25965 A 3002 3002
573 South_Africa 25966 A 3002 3002
574 South_Africa 25967 A 3002 3002
575 South_Africa 25968 A 3003 3003
576 South_Africa 25969 T 3003 3003
577 South_Africa 25970 G T 3003 3002 Trp193Leu
578 South_Africa 25971 G 3003 3003
579 South_Africa 25972 G 3003 3003
580 South_Africa 25973 A 3003 3003
581 South_Africa 25974 A G 3003 3001 Glu194Glu
582 South_Africa 25975 T 3003 3003
583 South_Africa 25976 C 3003 3003
584 South_Africa 25977 T C 3003 3002 Ser195Ser
585 South_Africa 25978 G 3003 3003
586 South_Africa 25979 G 3003 3003
587 South_Africa 25980 A 3003 3003
588 South_Africa 25981 G 3003 3003
589 South_Africa 25982 T 3003 3003
590 South_Africa 25983 A T 3003 3002 Val197Val
591 South_Africa 25984 A 3003 3003
592 South_Africa 25985 A 3003 3003
593 South_Africa 25986 A 3003 3003
594 South_Africa 25987 G 3003 3003
595 South_Africa 25988 A 3003 3003
596 South_Africa 25989 C 3003 3003
597 South_Africa 25990 T 3002 3002
598 South_Africa 25991 G 3002 3001
599 South_Africa 25992 T 3002 3000
600 South_Africa 25993 G 3002 3000
601 South_Africa 25994 T 3002 3000
602 South_Africa 25995 T 3002 3000
603 South_Africa 25996 G C,A 3002 2998 Val202Leu-p.Val202Ile
604 South_Africa 25997 T C 3002 2999 Val202Ala
605 South_Africa 25998 A 3002 3000
606 South_Africa 25999 T C 3002 2993 Leu203Leu
607 South_Africa 26000 T 3002 3000
608 South_Africa 26001 A 3002 3000
609 South_Africa 26002 C 3002 3001
610 South_Africa 26003 A 3002 3001
611 South_Africa 26004 C T 3002 2999 His204His
612 South_Africa 26005 A 3001 3000
613 South_Africa 26006 G 3002 3001
614 South_Africa 26007 T 3002 3000
615 South_Africa 26008 T 3002 3000
616 South_Africa 26009 A 3002 3000
617 South_Africa 26010 C T 3002 2999 Tyr206Tyr
618 South_Africa 26011 T 3002 3000
619 South_Africa 26012 T 3002 3000
620 South_Africa 26013 C T 3002 2993 Phe207Phe
621 South_Africa 26014 A 3002 3000
622 South_Africa 26015 C 3002 3000
623 South_Africa 26016 T G 3002 2998 Thr208Thr
624 South_Africa 26017 T 3002 3000
625 South_Africa 26018 C 3002 3000
626 South_Africa 26019 A 3002 3000
627 South_Africa 26020 G 3002 3000
628 South_Africa 26021 A C 3002 2999 Asp210Ala
629 South_Africa 26022 C 3002 3000
630 South_Africa 26023 T 3002 3000
631 South_Africa 26024 A 3002 3000
632 South_Africa 26025 T 3002 3000
633 South_Africa 26026 T 3002 3000
634 South_Africa 26027 A 3002 3000
635 South_Africa 26028 C T 3002 2994 Tyr212Tyr
636 South_Africa 26029 C 3002 3000
637 South_Africa 26030 A 3002 3000
638 South_Africa 26031 G 3002 3000
639 South_Africa 26032 C 3002 3000
640 South_Africa 26033 T 3002 3000
641 South_Africa 26034 G 3002 3000
642 South_Africa 26035 T 3002 3000
643 South_Africa 26036 A 3002 3001
644 South_Africa 26037 C 3002 3001
645 South_Africa 26038 T 3002 3001
646 South_Africa 26039 C 3002 3001
647 South_Africa 26040 A 3002 3001
648 South_Africa 26041 A 3002 3001
649 South_Africa 26042 C T 3002 2997 Thr217Ile
650 South_Africa 26043 T 3002 3001
651 South_Africa 26044 C 3002 3002
652 South_Africa 26045 A 3002 3002
653 South_Africa 26046 A 3002 3002
654 South_Africa 26047 T 3002 3002
655 South_Africa 26048 T 3002 3002
656 South_Africa 26049 G 3002 3002
657 South_Africa 26050 A 3002 3002
658 South_Africa 26051 G 3002 3002
659 South_Africa 26052 T 3002 3002
660 South_Africa 26053 A 3002 3002
661 South_Africa 26054 C 3002 3002
662 South_Africa 26055 A 3002 3002
663 South_Africa 26056 G 3002 3002
664 South_Africa 26057 A G 3002 3001 Asp222Gly
665 South_Africa 26058 C T 3002 3001 Asp222Asp
666 South_Africa 26059 A 3002 3002
667 South_Africa 26060 C T 3002 2969 Thr223Ile
668 South_Africa 26061 T 3002 3002
669 South_Africa 26062 G T,C 3002 2995 Gly224Cys-p.Gly224Arg
670 South_Africa 26063 G T 3002 2999 Gly224Val
671 South_Africa 26064 T 3002 3002
672 South_Africa 26065 G 3002 3002
673 South_Africa 26066 T 3002 3002
674 South_Africa 26067 T 3002 3002
675 South_Africa 26068 G A 3002 3000 Glu226Lys
676 South_Africa 26069 A 3002 3002
677 South_Africa 26070 A 3002 3002
678 South_Africa 26071 C T 3002 3001 His227Tyr
679 South_Africa 26072 A 3002 3002
680 South_Africa 26073 T 3002 3002
681 South_Africa 26074 G 3002 3002
682 South_Africa 26075 T 3002 3002
683 South_Africa 26076 T 3002 3002
684 South_Africa 26077 A 3002 3002
685 South_Africa 26078 C T 3002 2999 Thr229Ile
686 South_Africa 26079 C T,A 3002 3000 Thr229Thr-p.Thr229Thr
687 South_Africa 26080 T A 3002 3001 Phe230Ile
688 South_Africa 26081 T 3002 3002
689 South_Africa 26082 C 3002 3002
690 South_Africa 26083 T 3002 3002
691 South_Africa 26084 T 3002 3002
692 South_Africa 26085 C A 3002 3001 Phe231Leu
693 South_Africa 26086 A 3002 3002
694 South_Africa 26087 T A 3002 3001 Ile232Asn
695 South_Africa 26088 C T,A 3002 2999 Ile232Ile-p.Ile232Ile
696 South_Africa 26089 T 3002 3002
697 South_Africa 26090 A 3002 3002
698 South_Africa 26091 C 3002 3002
699 South_Africa 26092 A T 3002 3001 Asn234Tyr
700 South_Africa 26093 A 3002 3002
701 South_Africa 26094 T A 3002 3001 Asn234Lys
702 South_Africa 26095 A 3002 3002
703 South_Africa 26096 A 3002 3002
704 South_Africa 26097 A 3002 3002
705 South_Africa 26098 A T 3002 3001 Ile236Phe
706 South_Africa 26099 T 3002 3002
707 South_Africa 26100 T 3002 3002
708 South_Africa 26101 G 3001 3001
709 South_Africa 26102 T 3001 3001
710 South_Africa 26103 T 3001 3001
711 South_Africa 26104 G 3001 3001
712 South_Africa 26105 A 3001 3001
713 South_Africa 26106 T 3001 3001
714 South_Africa 26107 G 3001 3001
715 South_Africa 26108 A 3000 3000
716 South_Africa 26109 G 2999 2999
717 South_Africa 26110 C A 2999 2998 Pro240Thr
718 South_Africa 26111 C T 2998 2997 Pro240Leu
719 South_Africa 26112 T 2998 2998
720 South_Africa 26113 G 2998 2998
721 South_Africa 26114 A G 2998 2997 Glu241Gly
722 South_Africa 26115 A 2998 2998
723 South_Africa 26116 G T,A 2983 2980 Glu242*-p.Glu242Lys
724 South_Africa 26117 A 2983 2983
725 South_Africa 26118 A 2983 2983
726 South_Africa 26119 C T 2983 2982 His243Tyr
727 South_Africa 26120 A 2982 2982
728 South_Africa 26121 T 2982 2982
729 South_Africa 26122 G 2982 2982
730 South_Africa 26123 T 2982 2982
731 South_Africa 26124 C T 2982 2980 Val244Val
732 South_Africa 26125 C A 2982 2981 Gln245Lys
733 South_Africa 26126 A 2982 2982
734 South_Africa 26127 A 2982 2982
735 South_Africa 26128 A 2982 2982
736 South_Africa 26129 T 2982 2982
737 South_Africa 26130 T 2982 2982
738 South_Africa 26131 C T 2982 2981 His247Tyr
739 South_Africa 26132 A 2981 2981
740 South_Africa 26133 C 2981 2981
741 South_Africa 26134 A 2981 2981
742 South_Africa 26135 C 2981 2981
743 South_Africa 26136 A 2981 2981
744 South_Africa 26137 A 2981 2981
745 South_Africa 26138 T 2981 2981
746 South_Africa 26139 C T 2980 2979 Ile249Ile
747 South_Africa 26140 G 2980 2980
748 South_Africa 26141 A 2980 2980
749 South_Africa 26142 C 2980 2980
750 South_Africa 26143 G 2980 2980
751 South_Africa 26144 G A,T 2980 2956 Gly251Asp-p.Gly251Val
752 South_Africa 26145 T 2980 2980
753 South_Africa 26146 T 2979 2979
754 South_Africa 26147 C 2979 2979
755 South_Africa 26148 A 2934 2934
756 South_Africa 26149 T 2932 2932
757 South_Africa 26150 C 2929 2929
758 South_Africa 26151 C T 2894 2893 Ser253Ser
759 South_Africa 26152 G T,A 2894 2892 Gly254*-p.Gly254Arg
760 South_Africa 26153 G 2890 2890
761 South_Africa 26154 A T 2889 2885 Gly254Gly
762 South_Africa 26155 G 2887 2886
763 South_Africa 26156 T 2887 2886
764 South_Africa 26157 T 2887 2886
765 South_Africa 26158 G T 2887 2877 Val256Phe
766 South_Africa 26159 T 2888 2879
767 South_Africa 26160 T C 2888 2879 Val256Val
768 South_Africa 26161 A G 2888 2882 Asn257Asp
769 South_Africa 26162 A 2888 2888
770 South_Africa 26163 T 2888 2888
771 South_Africa 26164 C T 2888 2887 Pro258Ser
772 South_Africa 26165 C 2888 2888
773 South_Africa 26166 A 2888 2888
774 South_Africa 26167 G 2889 2889
775 South_Africa 26168 T 2889 2889
776 South_Africa 26169 A 2890 2890
777 South_Africa 26170 A 2890 2890
778 South_Africa 26171 T 2890 2890
779 South_Africa 26172 G 2890 2890
780 South_Africa 26173 G 2906 2906
781 South_Africa 26174 A G 2906 2905 Glu261Gly
782 South_Africa 26175 A 2906 2906
783 South_Africa 26176 C 2906 2906
784 South_Africa 26177 C T 2906 2905 Pro262Leu
785 South_Africa 26178 A 2906 2905
786 South_Africa 26179 A 2906 2905
787 South_Africa 26180 T 2906 2905
788 South_Africa 26181 T 2906 2905
789 South_Africa 26182 T 2906 2905
790 South_Africa 26183 A 2906 2905
791 South_Africa 26184 T C 2906 2903 Tyr264Tyr
792 South_Africa 26185 G 2906 2905
793 South_Africa 26186 A 2906 2905
794 South_Africa 26187 T 2906 2905
795 South_Africa 26188 G 2906 2905
796 South_Africa 26189 A 2906 2905
797 South_Africa 26190 A 2906 2905
798 South_Africa 26191 C 2907 2907
799 South_Africa 26192 C 2907 2907
800 South_Africa 26193 G 2907 2907
801 South_Africa 26194 A 2907 2907
802 South_Africa 26195 C 2907 2907
803 South_Africa 26196 G 2907 2907
804 South_Africa 26197 A 2907 2907
805 South_Africa 26198 C 2907 2907
806 South_Africa 26199 G 2907 2907
807 South_Africa 26200 A 2907 2907
808 South_Africa 26201 C 2907 2907
809 South_Africa 26202 T 2907 2907
810 South_Africa 26203 A 2907 2907
811 South_Africa 26204 C T 2907 2905 Thr271Ile
812 South_Africa 26205 T 2907 2907
813 South_Africa 26206 A 2907 2907
814 South_Africa 26207 G 2907 2907
815 South_Africa 26208 C T 2907 2906 Ser272Ser
816 South_Africa 26209 G T 2907 2906 Val273Leu
817 South_Africa 26210 T 2907 2907
818 South_Africa 26211 G T 2907 2906 Val273Val
819 South_Africa 26212 C 2907 2907
820 South_Africa 26213 C 2907 2907
821 South_Africa 26214 T 2907 2907
822 South_Africa 26215 T 2907 2907
823 South_Africa 26216 T 2907 2907
824 South_Africa 26217 G T 2907 2906 Leu275Phe
825 South_Africa 26218 T 2907 2907
826 South_Africa 26219 A 2907 2907
827 South_Africa 26220 A 2907 2907