National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Zambia 29558 A 2 2
1 Zambia 29559 T 2 2
2 Zambia 29560 G 2 2
3 Zambia 29561 G 2 2
4 Zambia 29562 G 2 2
5 Zambia 29563 C 2 2
6 Zambia 29564 T 2 2
7 Zambia 29565 A 2 2
8 Zambia 29566 T 2 2
9 Zambia 29567 A 2 2
10 Zambia 29568 T 2 2
11 Zambia 29569 A 2 2
12 Zambia 29570 A 2 2
13 Zambia 29571 A 2 2
14 Zambia 29572 C 2 2
15 Zambia 29573 G 2 2
16 Zambia 29574 T 2 2
17 Zambia 29575 T 2 2
18 Zambia 29576 T 2 2
19 Zambia 29577 T 2 2
20 Zambia 29578 C 2 2
21 Zambia 29579 G 2 2
22 Zambia 29580 C 2 2
23 Zambia 29581 T 2 2
24 Zambia 29582 T 2 2
25 Zambia 29583 T 2 2
26 Zambia 29584 T 2 2
27 Zambia 29585 C 2 2
28 Zambia 29586 C 2 2
29 Zambia 29587 G 2 2
30 Zambia 29588 T 2 2
31 Zambia 29589 T 2 2
32 Zambia 29590 T 2 2
33 Zambia 29591 A 2 2
34 Zambia 29592 C 2 2
35 Zambia 29593 G 2 2
36 Zambia 29594 A 2 2
37 Zambia 29595 T 2 2
38 Zambia 29596 A 2 2
39 Zambia 29597 T 2 2
40 Zambia 29598 A 2 2
41 Zambia 29599 T 2 2
42 Zambia 29600 A 2 2
43 Zambia 29601 G 2 2
44 Zambia 29602 T 2 2
45 Zambia 29603 C 2 2
46 Zambia 29604 T 2 2
47 Zambia 29605 A 2 2
48 Zambia 29606 C 2 2
49 Zambia 29607 T 2 2
50 Zambia 29608 C 2 2
51 Zambia 29609 T 2 2
52 Zambia 29610 T 2 2
53 Zambia 29611 G 2 2
54 Zambia 29612 T 2 2
55 Zambia 29613 G 2 2
56 Zambia 29614 C 2 2
57 Zambia 29615 A 2 2
58 Zambia 29616 G 2 2
59 Zambia 29617 A 2 2
60 Zambia 29618 A 2 2
61 Zambia 29619 T 2 2
62 Zambia 29620 G 2 2
63 Zambia 29621 A 2 2
64 Zambia 29622 A 2 2
65 Zambia 29623 T 2 2
66 Zambia 29624 T 2 2
67 Zambia 29625 C 2 2
68 Zambia 29626 T 2 2
69 Zambia 29627 C 2 2
70 Zambia 29628 G 2 2
71 Zambia 29629 T 2 2
72 Zambia 29630 A 2 2
73 Zambia 29631 A 2 2
74 Zambia 29632 C 2 2
75 Zambia 29633 T 2 2
76 Zambia 29634 A 2 2
77 Zambia 29635 C 2 2
78 Zambia 29636 A 2 2
79 Zambia 29637 T 2 2
80 Zambia 29638 A 2 2
81 Zambia 29639 G 2 2
82 Zambia 29640 C 2 2
83 Zambia 29641 A 2 2
84 Zambia 29642 C 2 2
85 Zambia 29643 A 2 2
86 Zambia 29644 A 2 2
87 Zambia 29645 G 2 2
88 Zambia 29646 T 2 2
89 Zambia 29647 A 2 2
90 Zambia 29648 G 2 2
91 Zambia 29649 A 2 2
92 Zambia 29650 T 2 2
93 Zambia 29651 G 2 2
94 Zambia 29652 T 2 2
95 Zambia 29653 A 2 2
96 Zambia 29654 G 2 2
97 Zambia 29655 T 2 2
98 Zambia 29656 T 2 2
99 Zambia 29657 A 2 2
100 Zambia 29658 A 2 2
101 Zambia 29659 C 2 2
102 Zambia 29660 T 2 2
103 Zambia 29661 T 2 2
104 Zambia 29662 T 2 2
105 Zambia 29663 A 2 2
106 Zambia 29664 A 2 2
107 Zambia 29665 T 2 2
108 Zambia 29666 C 2 2
109 Zambia 29667 T 2 2
110 Zambia 29668 C 2 2
111 Zambia 29669 A 2 2
112 Zambia 29670 C 2 2
113 Zambia 29671 A 2 2
114 Zambia 29672 T 2 2
115 Zambia 29673 A 2 2
116 Zambia 29674 G 2 2