National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Vietnam 29558 A 86 86
1 Vietnam 29559 T 86 86
2 Vietnam 29560 G 86 86
3 Vietnam 29561 G 86 86
4 Vietnam 29562 G 86 86
5 Vietnam 29563 C 86 86
6 Vietnam 29564 T 86 86
7 Vietnam 29565 A 86 86
8 Vietnam 29566 T 86 86
9 Vietnam 29567 A 86 86
10 Vietnam 29568 T 86 86
11 Vietnam 29569 A 86 86
12 Vietnam 29570 A 86 86
13 Vietnam 29571 A 86 86
14 Vietnam 29572 C 86 86
15 Vietnam 29573 G 86 86
16 Vietnam 29574 T 86 86
17 Vietnam 29575 T 86 86
18 Vietnam 29576 T 86 86
19 Vietnam 29577 T 86 86
20 Vietnam 29578 C 86 86
21 Vietnam 29579 G 86 86
22 Vietnam 29580 C 86 86
23 Vietnam 29581 T 86 86
24 Vietnam 29582 T 86 86
25 Vietnam 29583 T 86 86
26 Vietnam 29584 T 86 86
27 Vietnam 29585 C 86 86
28 Vietnam 29586 C 86 86
29 Vietnam 29587 G 86 86
30 Vietnam 29588 T 86 86
31 Vietnam 29589 T 86 86
32 Vietnam 29590 T 86 86
33 Vietnam 29591 A 86 86
34 Vietnam 29592 C 86 86
35 Vietnam 29593 G 86 86
36 Vietnam 29594 A 86 86
37 Vietnam 29595 T 86 86
38 Vietnam 29596 A 86 86
39 Vietnam 29597 T 86 86
40 Vietnam 29598 A 86 86
41 Vietnam 29599 T 86 86
42 Vietnam 29600 A 86 86
43 Vietnam 29601 G 86 86
44 Vietnam 29602 T 86 86
45 Vietnam 29603 C 86 86
46 Vietnam 29604 T 86 86
47 Vietnam 29605 A 86 86
48 Vietnam 29606 C 86 86
49 Vietnam 29607 T 86 86
50 Vietnam 29608 C 86 86
51 Vietnam 29609 T 86 86
52 Vietnam 29610 T 86 86
53 Vietnam 29611 G 86 86
54 Vietnam 29612 T 86 86
55 Vietnam 29613 G 86 86
56 Vietnam 29614 C 86 86
57 Vietnam 29615 A 86 86
58 Vietnam 29616 G 86 86
59 Vietnam 29617 A 86 86
60 Vietnam 29618 A 86 86
61 Vietnam 29619 T 86 86
62 Vietnam 29620 G 86 86
63 Vietnam 29621 A 86 86
64 Vietnam 29622 A 86 86
65 Vietnam 29623 T 86 86
66 Vietnam 29624 T 86 86
67 Vietnam 29625 C 86 86
68 Vietnam 29626 T 86 86
69 Vietnam 29627 C 86 86
70 Vietnam 29628 G 86 86
71 Vietnam 29629 T 86 86
72 Vietnam 29630 A 86 86
73 Vietnam 29631 A 86 86
74 Vietnam 29632 C 86 86
75 Vietnam 29633 T 86 86
76 Vietnam 29634 A 86 86
77 Vietnam 29635 C 86 86
78 Vietnam 29636 A 86 86
79 Vietnam 29637 T 86 86
80 Vietnam 29638 A 86 86
81 Vietnam 29639 G 86 86
82 Vietnam 29640 C 86 86
83 Vietnam 29641 A 86 86
84 Vietnam 29642 C 86 86
85 Vietnam 29643 A 86 86
86 Vietnam 29644 A 86 86
87 Vietnam 29645 G T 86 85 Val30Leu
88 Vietnam 29646 T 86 86
89 Vietnam 29647 A 86 86
90 Vietnam 29648 G 86 86
91 Vietnam 29649 A 86 86
92 Vietnam 29650 T 86 86
93 Vietnam 29651 G 86 86
94 Vietnam 29652 T 86 86
95 Vietnam 29653 A 86 86
96 Vietnam 29654 G 86 86
97 Vietnam 29655 T 86 86
98 Vietnam 29656 T 86 86
99 Vietnam 29657 A 85 85
100 Vietnam 29658 A 85 85
101 Vietnam 29659 C 85 85
102 Vietnam 29660 T 85 85
103 Vietnam 29661 T 85 85
104 Vietnam 29662 T 85 85
105 Vietnam 29663 A 85 85
106 Vietnam 29664 A 85 85
107 Vietnam 29665 T 85 85
108 Vietnam 29666 C 85 85
109 Vietnam 29667 T 85 85
110 Vietnam 29668 C 85 85
111 Vietnam 29669 A 85 85
112 Vietnam 29670 C 85 85
113 Vietnam 29671 A 85 85
114 Vietnam 29672 T 85 85
115 Vietnam 29673 A 85 85
116 Vietnam 29674 G 85 85