National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Uzbekistan 29558 A <*> 2 2
1 Uzbekistan 29559 T <*> 2 2
2 Uzbekistan 29560 G <*> 2 2
3 Uzbekistan 29561 G <*> 2 2
4 Uzbekistan 29562 G <*> 2 2
5 Uzbekistan 29563 C <*> 2 2
6 Uzbekistan 29564 T <*> 2 2
7 Uzbekistan 29565 A <*> 2 2
8 Uzbekistan 29566 T <*> 2 2
9 Uzbekistan 29567 A <*> 2 2
10 Uzbekistan 29568 T <*> 2 2
11 Uzbekistan 29569 A <*> 2 2
12 Uzbekistan 29570 A <*> 2 2
13 Uzbekistan 29571 A <*> 2 2
14 Uzbekistan 29572 C <*> 2 2
15 Uzbekistan 29573 G <*> 2 2
16 Uzbekistan 29574 T <*> 2 2
17 Uzbekistan 29575 T <*> 2 2
18 Uzbekistan 29576 T <*> 2 2
19 Uzbekistan 29577 T <*> 2 2
20 Uzbekistan 29578 C <*> 2 2
21 Uzbekistan 29579 G <*> 2 2
22 Uzbekistan 29580 C <*> 2 2
23 Uzbekistan 29581 T <*> 2 2
24 Uzbekistan 29582 T <*> 2 2
25 Uzbekistan 29583 T <*> 2 2
26 Uzbekistan 29584 T <*> 2 2
27 Uzbekistan 29585 C <*> 2 2
28 Uzbekistan 29586 C <*> 2 2
29 Uzbekistan 29587 G <*> 2 2
30 Uzbekistan 29588 T <*> 2 2
31 Uzbekistan 29589 T <*> 2 2
32 Uzbekistan 29590 T <*> 2 2
33 Uzbekistan 29591 A <*> 2 2
34 Uzbekistan 29592 C <*> 2 2
35 Uzbekistan 29593 G <*> 2 2
36 Uzbekistan 29594 A <*> 2 2
37 Uzbekistan 29595 T <*> 2 2
38 Uzbekistan 29596 A <*> 2 2
39 Uzbekistan 29597 T <*> 2 2
40 Uzbekistan 29598 A <*> 2 2
41 Uzbekistan 29599 T <*> 2 2
42 Uzbekistan 29600 A <*> 2 2
43 Uzbekistan 29601 G <*> 2 2
44 Uzbekistan 29602 T <*> 2 2
45 Uzbekistan 29603 C <*> 2 2
46 Uzbekistan 29604 T <*> 2 2
47 Uzbekistan 29605 A <*> 2 2
48 Uzbekistan 29606 C <*> 2 2
49 Uzbekistan 29607 T <*> 2 2
50 Uzbekistan 29608 C <*> 2 2
51 Uzbekistan 29609 T <*> 2 2
52 Uzbekistan 29610 T <*> 2 2
53 Uzbekistan 29611 G <*> 2 2
54 Uzbekistan 29612 T <*> 2 2
55 Uzbekistan 29613 G <*> 2 2
56 Uzbekistan 29614 C <*> 2 2
57 Uzbekistan 29615 A <*> 2 2
58 Uzbekistan 29616 G <*> 2 2
59 Uzbekistan 29617 A <*> 2 2
60 Uzbekistan 29618 A <*> 2 2
61 Uzbekistan 29619 T <*> 2 2
62 Uzbekistan 29620 G <*> 2 2
63 Uzbekistan 29621 A <*> 2 2
64 Uzbekistan 29622 A <*> 2 2
65 Uzbekistan 29623 T <*> 2 2
66 Uzbekistan 29624 T <*> 2 2
67 Uzbekistan 29625 C <*> 2 2
68 Uzbekistan 29626 T <*> 2 2
69 Uzbekistan 29627 C <*> 2 2
70 Uzbekistan 29628 G <*> 2 2
71 Uzbekistan 29629 T <*> 2 2
72 Uzbekistan 29630 A <*> 2 2
73 Uzbekistan 29631 A <*> 2 2
74 Uzbekistan 29632 C <*> 2 2
75 Uzbekistan 29633 T <*> 2 2
76 Uzbekistan 29634 A <*> 2 2
77 Uzbekistan 29635 C <*> 2 2
78 Uzbekistan 29636 A <*> 2 2
79 Uzbekistan 29637 T <*> 2 2
80 Uzbekistan 29638 A <*> 2 2
81 Uzbekistan 29639 G <*> 2 2
82 Uzbekistan 29640 C <*> 2 2
83 Uzbekistan 29641 A <*> 2 2
84 Uzbekistan 29642 C <*> 2 2
85 Uzbekistan 29643 A <*> 2 2
86 Uzbekistan 29644 A <*> 2 2
87 Uzbekistan 29645 G <*> 2 2
88 Uzbekistan 29646 T <*> 2 2
89 Uzbekistan 29647 A <*> 2 2
90 Uzbekistan 29648 G <*> 2 2
91 Uzbekistan 29649 A <*> 2 2
92 Uzbekistan 29650 T <*> 2 2
93 Uzbekistan 29651 G <*> 2 2
94 Uzbekistan 29652 T <*> 2 2
95 Uzbekistan 29653 A <*> 2 2
96 Uzbekistan 29654 G <*> 2 2
97 Uzbekistan 29655 T <*> 2 2
98 Uzbekistan 29656 T <*> 2 2
99 Uzbekistan 29657 A <*> 2 2
100 Uzbekistan 29658 A <*> 2 2
101 Uzbekistan 29659 C <*> 2 2
102 Uzbekistan 29660 T <*> 2 2
103 Uzbekistan 29661 T <*> 2 2
104 Uzbekistan 29662 T <*> 2 2
105 Uzbekistan 29663 A <*> 2 2
106 Uzbekistan 29664 A <*> 2 2
107 Uzbekistan 29665 T <*> 2 2
108 Uzbekistan 29666 C <*> 2 2
109 Uzbekistan 29667 T <*> 2 2
110 Uzbekistan 29668 C <*> 2 2
111 Uzbekistan 29669 A <*> 2 2
112 Uzbekistan 29670 C <*> 2 2
113 Uzbekistan 29671 A <*> 2 2
114 Uzbekistan 29672 T <*> 2 2
115 Uzbekistan 29673 A <*> 2 2
116 Uzbekistan 29674 G <*> 2 2