National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12             1                  
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Uruguay 29558 A 126 126
1 Uruguay 29559 T 126 126
2 Uruguay 29560 G 126 126
3 Uruguay 29561 G 126 126
4 Uruguay 29562 G 126 126
5 Uruguay 29563 C 126 126
6 Uruguay 29564 T 126 126
7 Uruguay 29565 A 126 126
8 Uruguay 29566 T 126 126
9 Uruguay 29567 A 126 126
10 Uruguay 29568 T 126 126
11 Uruguay 29569 A 126 126
12 Uruguay 29570 A 126 126
13 Uruguay 29571 A 126 126
14 Uruguay 29572 C 126 126
15 Uruguay 29573 G 126 126
16 Uruguay 29574 T 126 126
17 Uruguay 29575 T 126 126
18 Uruguay 29576 T 126 126
19 Uruguay 29577 T 126 126
20 Uruguay 29578 C 126 126
21 Uruguay 29579 G 126 126
22 Uruguay 29580 C 126 126
23 Uruguay 29581 T 126 126
24 Uruguay 29582 T 126 126
25 Uruguay 29583 T 126 126
26 Uruguay 29584 T 126 126
27 Uruguay 29585 C 126 126
28 Uruguay 29586 C 126 126
29 Uruguay 29587 G 126 126
30 Uruguay 29588 T 126 126
31 Uruguay 29589 T 126 126
32 Uruguay 29590 T 126 126
33 Uruguay 29591 A 126 126
34 Uruguay 29592 C 126 126
35 Uruguay 29593 G 126 126
36 Uruguay 29594 A 126 126
37 Uruguay 29595 T 126 126
38 Uruguay 29596 A 126 126
39 Uruguay 29597 T 126 126
40 Uruguay 29598 A 126 126
41 Uruguay 29599 T 126 126
42 Uruguay 29600 A 126 126
43 Uruguay 29601 G 126 125
44 Uruguay 29602 T 126 125
45 Uruguay 29603 C 126 125
46 Uruguay 29604 T 126 125
47 Uruguay 29605 A 126 125
48 Uruguay 29606 C 126 125
49 Uruguay 29607 T 126 125
50 Uruguay 29608 C 126 125
51 Uruguay 29609 T 126 125
52 Uruguay 29610 T 126 125
53 Uruguay 29611 G 126 125
54 Uruguay 29612 T 127 127
55 Uruguay 29613 G 127 127
56 Uruguay 29614 C 127 127
57 Uruguay 29615 A 127 127
58 Uruguay 29616 G 127 127
59 Uruguay 29617 A 127 127
60 Uruguay 29618 A 127 127
61 Uruguay 29619 T 127 127
62 Uruguay 29620 G 127 127
63 Uruguay 29621 A 127 127
64 Uruguay 29622 A 127 127
65 Uruguay 29623 T 127 127
66 Uruguay 29624 T 127 127
67 Uruguay 29625 C 127 127
68 Uruguay 29626 T 127 127
69 Uruguay 29627 C 127 127
70 Uruguay 29628 G 127 127
71 Uruguay 29629 T 127 127
72 Uruguay 29630 A 127 127
73 Uruguay 29631 A 127 127
74 Uruguay 29632 C 127 127
75 Uruguay 29633 T 127 127
76 Uruguay 29634 A 127 127
77 Uruguay 29635 C 127 127
78 Uruguay 29636 A 127 127
79 Uruguay 29637 T 127 127
80 Uruguay 29638 A 127 127
81 Uruguay 29639 G 127 127
82 Uruguay 29640 C 127 127
83 Uruguay 29641 A 127 127
84 Uruguay 29642 C 127 127
85 Uruguay 29643 A 127 127
86 Uruguay 29644 A 127 127
87 Uruguay 29645 G 127 127
88 Uruguay 29646 T 127 127
89 Uruguay 29647 A 127 127
90 Uruguay 29648 G 127 127
91 Uruguay 29649 A 127 127
92 Uruguay 29650 T 127 127
93 Uruguay 29651 G 127 127
94 Uruguay 29652 T 127 127
95 Uruguay 29653 A 127 127
96 Uruguay 29654 G 127 127
97 Uruguay 29655 T 127 127
98 Uruguay 29656 T 127 127
99 Uruguay 29657 A 127 127
100 Uruguay 29658 A 127 127
101 Uruguay 29659 C 127 127
102 Uruguay 29660 T 127 127
103 Uruguay 29661 T 127 127
104 Uruguay 29662 T 127 127
105 Uruguay 29663 A 127 127
106 Uruguay 29664 A 127 127
107 Uruguay 29665 T 127 127
108 Uruguay 29666 C 112 112
109 Uruguay 29667 T 110 110
110 Uruguay 29668 C T 110 109 Leu37Leu
111 Uruguay 29669 A 110 110
112 Uruguay 29670 C 110 110
113 Uruguay 29671 A 110 110
114 Uruguay 29672 T 110 110
115 Uruguay 29673 A 110 110
116 Uruguay 29674 G 110 110