National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G H I L M N P Q R S T V Y
*     2                                  
-     117                                  
?                                        
A     6                           1   1  
C     3   1                              
D     3                   1             1
F     12                           1      
G     3                                  
H                                        
I     9                 1             1  
L     12               1                  
M     6                                  
N     16           1       1              
P     3                           1      
Q     3                                  
R     6   1           1                  
S     6         1                 1      
T     6                                  
V     12       1       1                  
Y     9                                 1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 United_Arab_Emirates 29558 A 1839 1839
1 United_Arab_Emirates 29559 T 1839 1839
2 United_Arab_Emirates 29560 G 1839 1839
3 United_Arab_Emirates 29561 G 1839 1839
4 United_Arab_Emirates 29562 G 1839 1839
5 United_Arab_Emirates 29563 C 1839 1839
6 United_Arab_Emirates 29564 T 1839 1839
7 United_Arab_Emirates 29565 A 1839 1839
8 United_Arab_Emirates 29566 T 1839 1839
9 United_Arab_Emirates 29567 A G 1839 1838 Ile4Val
10 United_Arab_Emirates 29568 T 1839 1839
11 United_Arab_Emirates 29569 A 1839 1839
12 United_Arab_Emirates 29570 A 1839 1839
13 United_Arab_Emirates 29571 A 1839 1839
14 United_Arab_Emirates 29572 C 1839 1839
15 United_Arab_Emirates 29573 G T 1839 1838 Val6Phe
16 United_Arab_Emirates 29574 T 1839 1839
17 United_Arab_Emirates 29575 T 1839 1839
18 United_Arab_Emirates 29576 T 1839 1839
19 United_Arab_Emirates 29577 T 1839 1839
20 United_Arab_Emirates 29578 C 1839 1839
21 United_Arab_Emirates 29579 G T 1839 1838 Ala8Ser
22 United_Arab_Emirates 29580 C 1839 1839
23 United_Arab_Emirates 29581 T 1839 1839
24 United_Arab_Emirates 29582 T 1839 1839
25 United_Arab_Emirates 29583 T 1839 1839
26 United_Arab_Emirates 29584 T 1839 1839
27 United_Arab_Emirates 29585 C T 1839 1826 Pro10Ser
28 United_Arab_Emirates 29586 C 1839 1839
29 United_Arab_Emirates 29587 G 1839 1839
30 United_Arab_Emirates 29588 T 1839 1839
31 United_Arab_Emirates 29589 T 1839 1839
32 United_Arab_Emirates 29590 T 1839 1839
33 United_Arab_Emirates 29591 A 1839 1839
34 United_Arab_Emirates 29592 C 1839 1839
35 United_Arab_Emirates 29593 G 1839 1839
36 United_Arab_Emirates 29594 A 1839 1839
37 United_Arab_Emirates 29595 T 1839 1839
38 United_Arab_Emirates 29596 A G 1839 1838 Ile13Met
39 United_Arab_Emirates 29597 T 1839 1839
40 United_Arab_Emirates 29598 A 1839 1839
41 United_Arab_Emirates 29599 T 1839 1839
42 United_Arab_Emirates 29600 A G 1839 1820 Ser15Gly
43 United_Arab_Emirates 29601 G 1839 1839
44 United_Arab_Emirates 29602 T C 1839 1838 Ser15Ser
45 United_Arab_Emirates 29603 C 1839 1839
46 United_Arab_Emirates 29604 T 1839 1839
47 United_Arab_Emirates 29605 A 1839 1839
48 United_Arab_Emirates 29606 C 1839 1839
49 United_Arab_Emirates 29607 T 1839 1839
50 United_Arab_Emirates 29608 C 1839 1839
51 United_Arab_Emirates 29609 T 1839 1839
52 United_Arab_Emirates 29610 T 1839 1839
53 United_Arab_Emirates 29611 G 1839 1839
54 United_Arab_Emirates 29612 T 1839 1839
55 United_Arab_Emirates 29613 G 1839 1839
56 United_Arab_Emirates 29614 C T 1839 1832 Cys19Cys
57 United_Arab_Emirates 29615 A 1839 1839
58 United_Arab_Emirates 29616 G 1839 1839
59 United_Arab_Emirates 29617 A 1839 1839
60 United_Arab_Emirates 29618 A 1842 1842
61 United_Arab_Emirates 29619 T 1842 1842
62 United_Arab_Emirates 29620 G 1842 1842
63 United_Arab_Emirates 29621 A 1842 1842
64 United_Arab_Emirates 29622 A 1842 1842
65 United_Arab_Emirates 29623 T 1842 1842
66 United_Arab_Emirates 29624 T 1842 1842
67 United_Arab_Emirates 29625 C 1842 1842
68 United_Arab_Emirates 29626 T 1842 1842
69 United_Arab_Emirates 29627 C T 1842 1841 Arg24Cys
70 United_Arab_Emirates 29628 G T 1842 1841 Arg24Leu
71 United_Arab_Emirates 29629 T 1842 1842
72 United_Arab_Emirates 29630 A 1842 1842
73 United_Arab_Emirates 29631 A 1842 1842
74 United_Arab_Emirates 29632 C 1842 1842
75 United_Arab_Emirates 29633 T 1842 1842
76 United_Arab_Emirates 29634 A 1842 1842
77 United_Arab_Emirates 29635 C T 1842 1841 Tyr26Tyr
78 United_Arab_Emirates 29636 A 1842 1842
79 United_Arab_Emirates 29637 T 1842 1842
80 United_Arab_Emirates 29638 A 1842 1842
81 United_Arab_Emirates 29639 G 1842 1842
82 United_Arab_Emirates 29640 C T 1842 1840 Ala28Val
83 United_Arab_Emirates 29641 A 1842 1842
84 United_Arab_Emirates 29642 C 1842 1842
85 United_Arab_Emirates 29643 A 1842 1842
86 United_Arab_Emirates 29644 A 1842 1842
87 United_Arab_Emirates 29645 G T 1842 1817 Val30Leu
88 United_Arab_Emirates 29646 T 1842 1842
89 United_Arab_Emirates 29647 A 1842 1842
90 United_Arab_Emirates 29648 G T,A 1842 1837 Asp31Tyr-p.Asp31Asn
91 United_Arab_Emirates 29649 A 1842 1842
92 United_Arab_Emirates 29650 T 1842 1842
93 United_Arab_Emirates 29651 G 1842 1842
94 United_Arab_Emirates 29652 T 1842 1842
95 United_Arab_Emirates 29653 A 1842 1842
96 United_Arab_Emirates 29654 G 1842 1842
97 United_Arab_Emirates 29655 T 1842 1842
98 United_Arab_Emirates 29656 T 1842 1842
99 United_Arab_Emirates 29657 A C 1842 1840 Asn34His
100 United_Arab_Emirates 29658 A 1842 1842
101 United_Arab_Emirates 29659 C T 1842 1839 Asn34Asn
102 United_Arab_Emirates 29660 T 1842 1842
103 United_Arab_Emirates 29661 T C 1842 1840 Phe35Ser
104 United_Arab_Emirates 29662 T 1842 1842
105 United_Arab_Emirates 29663 A 1842 1842
106 United_Arab_Emirates 29664 A 1842 1842
107 United_Arab_Emirates 29665 T 1842 1842
108 United_Arab_Emirates 29666 C 1828 1828
109 United_Arab_Emirates 29667 T 1828 1828
110 United_Arab_Emirates 29668 C T 1828 1826 Leu37Leu
111 United_Arab_Emirates 29669 A 1828 1828
112 United_Arab_Emirates 29670 C 1828 1828
113 United_Arab_Emirates 29671 A 1828 1828
114 United_Arab_Emirates 29672 T 1828 1828
115 United_Arab_Emirates 29673 A 1828 1828
116 United_Arab_Emirates 29674 G 1828 1828