National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q 1   3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                               1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Uganda 29558 A 133 133
1 Uganda 29559 T 133 133
2 Uganda 29560 G 133 133
3 Uganda 29561 G 133 133
4 Uganda 29562 G 133 133
5 Uganda 29563 C 133 133
6 Uganda 29564 T 133 133
7 Uganda 29565 A 133 133
8 Uganda 29566 T C 133 132 Tyr3Tyr
9 Uganda 29567 A 133 133
10 Uganda 29568 T 133 133
11 Uganda 29569 A 133 133
12 Uganda 29570 A 133 133
13 Uganda 29571 A 133 133
14 Uganda 29572 C 133 133
15 Uganda 29573 G 133 133
16 Uganda 29574 T 133 133
17 Uganda 29575 T 133 133
18 Uganda 29576 T 133 133
19 Uganda 29577 T 133 133
20 Uganda 29578 C 133 133
21 Uganda 29579 G 133 133
22 Uganda 29580 C 133 133
23 Uganda 29581 T 133 133
24 Uganda 29582 T 133 133
25 Uganda 29583 T 133 133
26 Uganda 29584 T 133 133
27 Uganda 29585 C 133 133
28 Uganda 29586 C 133 133
29 Uganda 29587 G 133 133
30 Uganda 29588 T 133 133
31 Uganda 29589 T 133 133
32 Uganda 29590 T 133 133
33 Uganda 29591 A 133 133
34 Uganda 29592 C 133 133
35 Uganda 29593 G 133 133
36 Uganda 29594 A 133 133
37 Uganda 29595 T 133 133
38 Uganda 29596 A 133 133
39 Uganda 29597 T 133 133
40 Uganda 29598 A 133 133
41 Uganda 29599 T 133 133
42 Uganda 29600 A 133 133
43 Uganda 29601 G 133 133
44 Uganda 29602 T 133 133
45 Uganda 29603 C 133 133
46 Uganda 29604 T 133 133
47 Uganda 29605 A 133 133
48 Uganda 29606 C 133 133
49 Uganda 29607 T 133 133
50 Uganda 29608 C 133 133
51 Uganda 29609 T 133 133
52 Uganda 29610 T 133 133
53 Uganda 29611 G 133 133
54 Uganda 29612 T 133 133
55 Uganda 29613 G 133 133
56 Uganda 29614 C 133 133
57 Uganda 29615 A 133 133
58 Uganda 29616 G 133 133
59 Uganda 29617 A 133 133
60 Uganda 29618 A 133 133
61 Uganda 29619 T 133 133
62 Uganda 29620 G 133 133
63 Uganda 29621 A 133 133
64 Uganda 29622 A 133 133
65 Uganda 29623 T 133 133
66 Uganda 29624 T 133 133
67 Uganda 29625 C 133 133
68 Uganda 29626 T 133 133
69 Uganda 29627 C 133 133
70 Uganda 29628 G 133 133
71 Uganda 29629 T 133 133
72 Uganda 29630 A 133 133
73 Uganda 29631 A 133 133
74 Uganda 29632 C 133 133
75 Uganda 29633 T 133 133
76 Uganda 29634 A 133 133
77 Uganda 29635 C 133 133
78 Uganda 29636 A 133 133
79 Uganda 29637 T 133 133
80 Uganda 29638 A 133 133
81 Uganda 29639 G 133 133
82 Uganda 29640 C 133 133
83 Uganda 29641 A 133 133
84 Uganda 29642 C T 133 132 Gln29*
85 Uganda 29643 A 133 133
86 Uganda 29644 A 133 133
87 Uganda 29645 G 133 133
88 Uganda 29646 T 133 133
89 Uganda 29647 A 133 133
90 Uganda 29648 G 133 133
91 Uganda 29649 A 133 133
92 Uganda 29650 T 133 133
93 Uganda 29651 G 133 133
94 Uganda 29652 T 133 133
95 Uganda 29653 A 133 133
96 Uganda 29654 G 133 133
97 Uganda 29655 T 133 133
98 Uganda 29656 T 133 133
99 Uganda 29657 A 133 133
100 Uganda 29658 A 133 133
101 Uganda 29659 C 133 133
102 Uganda 29660 T 133 133
103 Uganda 29661 T 133 133
104 Uganda 29662 T 133 133
105 Uganda 29663 A 133 133
106 Uganda 29664 A 133 133
107 Uganda 29665 T 133 133
108 Uganda 29666 C 132 132
109 Uganda 29667 T 132 132
110 Uganda 29668 C 132 132
111 Uganda 29669 A 132 132
112 Uganda 29670 C 132 131
113 Uganda 29671 A 132 131
114 Uganda 29672 T 132 132
115 Uganda 29673 A 132 132
116 Uganda 29674 G 132 132