National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                             1  
C     3   1                            
D     3                                
F     12                                
G     3         1                      
I     9                           1    
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9                               1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Turkey 29558 A 490 490
1 Turkey 29559 T 490 490
2 Turkey 29560 G 490 490
3 Turkey 29561 G 490 490
4 Turkey 29562 G 490 490
5 Turkey 29563 C T 490 488 Gly2Gly
6 Turkey 29564 T 490 489
7 Turkey 29565 A 490 490
8 Turkey 29566 T 490 490
9 Turkey 29567 A 490 490
10 Turkey 29568 T 490 490
11 Turkey 29569 A 490 490
12 Turkey 29570 A 490 490
13 Turkey 29571 A 490 490
14 Turkey 29572 C 490 490
15 Turkey 29573 G 490 490
16 Turkey 29574 T 490 490
17 Turkey 29575 T 490 490
18 Turkey 29576 T 490 490
19 Turkey 29577 T 490 490
20 Turkey 29578 C 490 490
21 Turkey 29579 G 490 490
22 Turkey 29580 C T 490 488 Ala8Val
23 Turkey 29581 T 490 490
24 Turkey 29582 T 490 490
25 Turkey 29583 T 490 490
26 Turkey 29584 T 490 490
27 Turkey 29585 C 490 490
28 Turkey 29586 C 490 490
29 Turkey 29587 G 490 490
30 Turkey 29588 T 490 490
31 Turkey 29589 T 490 490
32 Turkey 29590 T 490 490
33 Turkey 29591 A 490 490
34 Turkey 29592 C 490 490
35 Turkey 29593 G 490 490
36 Turkey 29594 A 490 490
37 Turkey 29595 T C 490 487 Ile13Thr
38 Turkey 29596 A 490 490
39 Turkey 29597 T 490 490
40 Turkey 29598 A 490 490
41 Turkey 29599 T 490 490
42 Turkey 29600 A 490 490
43 Turkey 29601 G 490 490
44 Turkey 29602 T 490 490
45 Turkey 29603 C 490 490
46 Turkey 29604 T 490 490
47 Turkey 29605 A 490 490
48 Turkey 29606 C 490 489
49 Turkey 29607 T 490 490
50 Turkey 29608 C 490 490
51 Turkey 29609 T 490 490
52 Turkey 29610 T 490 490
53 Turkey 29611 G 490 490
54 Turkey 29612 T 490 490
55 Turkey 29613 G 490 490
56 Turkey 29614 C T 490 489 Cys19Cys
57 Turkey 29615 A 490 490
58 Turkey 29616 G 490 490
59 Turkey 29617 A 490 490
60 Turkey 29618 A 490 490
61 Turkey 29619 T 490 490
62 Turkey 29620 G 490 490
63 Turkey 29621 A 490 490
64 Turkey 29622 A 490 490
65 Turkey 29623 T 490 490
66 Turkey 29624 T 490 490
67 Turkey 29625 C 490 490
68 Turkey 29626 T 490 490
69 Turkey 29627 C 490 490
70 Turkey 29628 G 490 490
71 Turkey 29629 T 490 490
72 Turkey 29630 A 490 490
73 Turkey 29631 A 490 490
74 Turkey 29632 C 490 490
75 Turkey 29633 T 490 490
76 Turkey 29634 A 490 490
77 Turkey 29635 C T 490 489 Tyr26Tyr
78 Turkey 29636 A 490 490
79 Turkey 29637 T 490 490
80 Turkey 29638 A 490 490
81 Turkey 29639 G 490 490
82 Turkey 29640 C 490 490
83 Turkey 29641 A 490 490
84 Turkey 29642 C 490 490
85 Turkey 29643 A 490 490
86 Turkey 29644 A 490 490
87 Turkey 29645 G T 490 486 Val30Leu
88 Turkey 29646 T 490 490
89 Turkey 29647 A 490 490
90 Turkey 29648 G 490 490
91 Turkey 29649 A 490 490
92 Turkey 29650 T 490 490
93 Turkey 29651 G 490 490
94 Turkey 29652 T 489 489
95 Turkey 29653 A 489 489
96 Turkey 29654 G 489 489
97 Turkey 29655 T 489 489
98 Turkey 29656 T 488 488
99 Turkey 29657 A 488 488
100 Turkey 29658 A 488 488
101 Turkey 29659 C 488 488
102 Turkey 29660 T 488 488
103 Turkey 29661 T 488 488
104 Turkey 29662 T 488 488
105 Turkey 29663 A 488 488
106 Turkey 29664 A 488 488
107 Turkey 29665 T 488 488
108 Turkey 29666 C 485 482
109 Turkey 29667 T 485 484
110 Turkey 29668 C 479 479
111 Turkey 29669 A 479 479
112 Turkey 29670 C 479 479
113 Turkey 29671 A 479 479
114 Turkey 29672 T 479 479
115 Turkey 29673 A 479 479
116 Turkey 29674 G 479 479