National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3   1                            
D     3                               1
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q 1   3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9                               1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Tunisia 29558 A 78 78
1 Tunisia 29559 T 78 78
2 Tunisia 29560 G 78 78
3 Tunisia 29561 G 78 78
4 Tunisia 29562 G 78 78
5 Tunisia 29563 C 78 78
6 Tunisia 29564 T 78 78
7 Tunisia 29565 A 78 78
8 Tunisia 29566 T 78 78
9 Tunisia 29567 A 78 78
10 Tunisia 29568 T 78 78
11 Tunisia 29569 A 78 78
12 Tunisia 29570 A 78 78
13 Tunisia 29571 A 78 78
14 Tunisia 29572 C 78 78
15 Tunisia 29573 G 78 78
16 Tunisia 29574 T 78 78
17 Tunisia 29575 T 78 78
18 Tunisia 29576 T 78 78
19 Tunisia 29577 T 78 78
20 Tunisia 29578 C 78 78
21 Tunisia 29579 G 78 78
22 Tunisia 29580 C 78 78
23 Tunisia 29581 T 78 78
24 Tunisia 29582 T 78 78
25 Tunisia 29583 T 78 78
26 Tunisia 29584 T 78 78
27 Tunisia 29585 C 78 78
28 Tunisia 29586 C 78 78
29 Tunisia 29587 G 78 78
30 Tunisia 29588 T 78 78
31 Tunisia 29589 T 78 78
32 Tunisia 29590 T 78 78
33 Tunisia 29591 A 78 78
34 Tunisia 29592 C 78 78
35 Tunisia 29593 G 78 78
36 Tunisia 29594 A 78 78
37 Tunisia 29595 T 78 78
38 Tunisia 29596 A 78 78
39 Tunisia 29597 T 78 78
40 Tunisia 29598 A 78 78
41 Tunisia 29599 T 78 78
42 Tunisia 29600 A 78 78
43 Tunisia 29601 G 78 78
44 Tunisia 29602 T 78 78
45 Tunisia 29603 C 78 78
46 Tunisia 29604 T 78 78
47 Tunisia 29605 A 78 78
48 Tunisia 29606 C 78 78
49 Tunisia 29607 T 78 78
50 Tunisia 29608 C 78 78
51 Tunisia 29609 T 78 78
52 Tunisia 29610 T 78 78
53 Tunisia 29611 G 78 78
54 Tunisia 29612 T 78 78
55 Tunisia 29613 G 78 78
56 Tunisia 29614 C T 78 76 Cys19Cys
57 Tunisia 29615 A 78 78
58 Tunisia 29616 G 78 78
59 Tunisia 29617 A 78 78
60 Tunisia 29618 A 78 78
61 Tunisia 29619 T 78 78
62 Tunisia 29620 G 78 78
63 Tunisia 29621 A 78 78
64 Tunisia 29622 A 78 78
65 Tunisia 29623 T 78 78
66 Tunisia 29624 T 78 78
67 Tunisia 29625 C 78 78
68 Tunisia 29626 T 78 78
69 Tunisia 29627 C 78 78
70 Tunisia 29628 G 78 78
71 Tunisia 29629 T 78 78
72 Tunisia 29630 A 78 78
73 Tunisia 29631 A 78 78
74 Tunisia 29632 C 78 78
75 Tunisia 29633 T 78 78
76 Tunisia 29634 A 78 78
77 Tunisia 29635 C T 78 77 Tyr26Tyr
78 Tunisia 29636 A 78 78
79 Tunisia 29637 T 78 78
80 Tunisia 29638 A 78 78
81 Tunisia 29639 G 78 78
82 Tunisia 29640 C 78 78
83 Tunisia 29641 A 78 78
84 Tunisia 29642 C T 78 77 Gln29*
85 Tunisia 29643 A 78 78
86 Tunisia 29644 A 78 78
87 Tunisia 29645 G T 78 57 Val30Leu
88 Tunisia 29646 T 78 78
89 Tunisia 29647 A 78 78
90 Tunisia 29648 G T 78 74 Asp31Tyr
91 Tunisia 29649 A 78 78
92 Tunisia 29650 T 78 78
93 Tunisia 29651 G 78 78
94 Tunisia 29652 T 78 78
95 Tunisia 29653 A 78 78
96 Tunisia 29654 G 78 78
97 Tunisia 29655 T 78 78
98 Tunisia 29656 T 78 78
99 Tunisia 29657 A 78 78
100 Tunisia 29658 A 78 78
101 Tunisia 29659 C 78 78
102 Tunisia 29660 T 78 78
103 Tunisia 29661 T 78 78
104 Tunisia 29662 T 78 78
105 Tunisia 29663 A 78 78
106 Tunisia 29664 A 78 78
107 Tunisia 29665 T 78 78
108 Tunisia 29666 C 76 76
109 Tunisia 29667 T 76 76
110 Tunisia 29668 C 76 76
111 Tunisia 29669 A 76 76
112 Tunisia 29670 C 76 76
113 Tunisia 29671 A 76 76
114 Tunisia 29672 T 76 76
115 Tunisia 29673 A 76 76
116 Tunisia 29674 G 76 76