National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12       1                        
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Thailand 29558 A 530 530
1 Thailand 29559 T 530 530
2 Thailand 29560 G 530 530
3 Thailand 29561 G 530 530
4 Thailand 29562 G 530 530
5 Thailand 29563 C 530 530
6 Thailand 29564 T 530 530
7 Thailand 29565 A 530 530
8 Thailand 29566 T 530 530
9 Thailand 29567 A 530 530
10 Thailand 29568 T 530 530
11 Thailand 29569 A 530 530
12 Thailand 29570 A 530 530
13 Thailand 29571 A 530 530
14 Thailand 29572 C 530 530
15 Thailand 29573 G 530 530
16 Thailand 29574 T 530 530
17 Thailand 29575 T 530 530
18 Thailand 29576 T 530 530
19 Thailand 29577 T 530 530
20 Thailand 29578 C 530 530
21 Thailand 29579 G 530 530
22 Thailand 29580 C 530 530
23 Thailand 29581 T 530 530
24 Thailand 29582 T 530 530
25 Thailand 29583 T 530 530
26 Thailand 29584 T 530 530
27 Thailand 29585 C 530 530
28 Thailand 29586 C 530 530
29 Thailand 29587 G 530 530
30 Thailand 29588 T 530 530
31 Thailand 29589 T 530 530
32 Thailand 29590 T 530 530
33 Thailand 29591 A 530 530
34 Thailand 29592 C 530 530
35 Thailand 29593 G 530 530
36 Thailand 29594 A 530 530
37 Thailand 29595 T 530 530
38 Thailand 29596 A 530 530
39 Thailand 29597 T 530 530
40 Thailand 29598 A 530 530
41 Thailand 29599 T 530 530
42 Thailand 29600 A 530 530
43 Thailand 29601 G 530 530
44 Thailand 29602 T 530 530
45 Thailand 29603 C 530 530
46 Thailand 29604 T 530 530
47 Thailand 29605 A 530 530
48 Thailand 29606 C 530 530
49 Thailand 29607 T 530 530
50 Thailand 29608 C 530 530
51 Thailand 29609 T 530 530
52 Thailand 29610 T 530 530
53 Thailand 29611 G 530 530
54 Thailand 29612 T 530 530
55 Thailand 29613 G 530 530
56 Thailand 29614 C 530 530
57 Thailand 29615 A 530 530
58 Thailand 29616 G 530 530
59 Thailand 29617 A 530 530
60 Thailand 29618 A 530 530
61 Thailand 29619 T 530 530
62 Thailand 29620 G 530 530
63 Thailand 29621 A 530 530
64 Thailand 29622 A 530 530
65 Thailand 29623 T 530 530
66 Thailand 29624 T 530 530
67 Thailand 29625 C 530 530
68 Thailand 29626 T 530 530
69 Thailand 29627 C 530 530
70 Thailand 29628 G 530 530
71 Thailand 29629 T 530 530
72 Thailand 29630 A 530 530
73 Thailand 29631 A 530 530
74 Thailand 29632 C 530 530
75 Thailand 29633 T 530 530
76 Thailand 29634 A 530 530
77 Thailand 29635 C 530 530
78 Thailand 29636 A 530 530
79 Thailand 29637 T 530 530
80 Thailand 29638 A 530 530
81 Thailand 29639 G 530 530
82 Thailand 29640 C 530 530
83 Thailand 29641 A 530 530
84 Thailand 29642 C 530 529
85 Thailand 29643 A 530 530
86 Thailand 29644 A 530 530
87 Thailand 29645 G T 530 527 Val30Leu
88 Thailand 29646 T 530 530
89 Thailand 29647 A 530 530
90 Thailand 29648 G 530 530
91 Thailand 29649 A 530 530
92 Thailand 29650 T 530 530
93 Thailand 29651 G 529 529
94 Thailand 29652 T 529 529
95 Thailand 29653 A 529 529
96 Thailand 29654 G 529 529
97 Thailand 29655 T 529 529
98 Thailand 29656 T 529 529
99 Thailand 29657 A 529 529
100 Thailand 29658 A 529 529
101 Thailand 29659 C 529 529
102 Thailand 29660 T 529 529
103 Thailand 29661 T 529 529
104 Thailand 29662 T 529 529
105 Thailand 29663 A 529 529
106 Thailand 29664 A 529 529
107 Thailand 29665 T 529 529
108 Thailand 29666 C T 527 514 Leu37Phe
109 Thailand 29667 T 527 527
110 Thailand 29668 C 527 527
111 Thailand 29669 A 527 527
112 Thailand 29670 C 527 527
113 Thailand 29671 A 527 527
114 Thailand 29672 T 527 527
115 Thailand 29673 A 525 525
116 Thailand 29674 G 524 524