National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q 1   3                                
R     6   1         1                  
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Taiwan 29558 A 149 149
1 Taiwan 29559 T 149 149
2 Taiwan 29560 G 149 149
3 Taiwan 29561 G 149 149
4 Taiwan 29562 G 149 149
5 Taiwan 29563 C 149 149
6 Taiwan 29564 T 149 149
7 Taiwan 29565 A 149 149
8 Taiwan 29566 T 149 149
9 Taiwan 29567 A 149 149
10 Taiwan 29568 T 149 149
11 Taiwan 29569 A 149 149
12 Taiwan 29570 A 149 149
13 Taiwan 29571 A 149 149
14 Taiwan 29572 C 149 149
15 Taiwan 29573 G 149 149
16 Taiwan 29574 T 149 149
17 Taiwan 29575 T 149 149
18 Taiwan 29576 T 149 149
19 Taiwan 29577 T 149 149
20 Taiwan 29578 C 149 149
21 Taiwan 29579 G 149 149
22 Taiwan 29580 C 149 149
23 Taiwan 29581 T 149 149
24 Taiwan 29582 T 149 149
25 Taiwan 29583 T 149 149
26 Taiwan 29584 T 149 149
27 Taiwan 29585 C 149 149
28 Taiwan 29586 C 149 149
29 Taiwan 29587 G 149 149
30 Taiwan 29588 T 149 149
31 Taiwan 29589 T 149 149
32 Taiwan 29590 T 149 149
33 Taiwan 29591 A 149 149
34 Taiwan 29592 C 149 149
35 Taiwan 29593 G 149 149
36 Taiwan 29594 A 149 149
37 Taiwan 29595 T 149 149
38 Taiwan 29596 A 149 149
39 Taiwan 29597 T 149 149
40 Taiwan 29598 A 149 149
41 Taiwan 29599 T 149 149
42 Taiwan 29600 A 149 149
43 Taiwan 29601 G 149 149
44 Taiwan 29602 T 149 149
45 Taiwan 29603 C 149 149
46 Taiwan 29604 T 149 149
47 Taiwan 29605 A 149 149
48 Taiwan 29606 C 149 149
49 Taiwan 29607 T 149 149
50 Taiwan 29608 C 149 149
51 Taiwan 29609 T 149 149
52 Taiwan 29610 T 149 149
53 Taiwan 29611 G 149 149
54 Taiwan 29612 T 149 149
55 Taiwan 29613 G 149 149
56 Taiwan 29614 C 149 149
57 Taiwan 29615 A 149 149
58 Taiwan 29616 G 149 149
59 Taiwan 29617 A 149 149
60 Taiwan 29618 A 149 149
61 Taiwan 29619 T 149 149
62 Taiwan 29620 G 149 149
63 Taiwan 29621 A 149 149
64 Taiwan 29622 A 149 149
65 Taiwan 29623 T 149 149
66 Taiwan 29624 T 149 149
67 Taiwan 29625 C 149 149
68 Taiwan 29626 T 149 149
69 Taiwan 29627 C T 149 148 Arg24Cys
70 Taiwan 29628 G T 149 148 Arg24Leu
71 Taiwan 29629 T 149 149
72 Taiwan 29630 A 149 149
73 Taiwan 29631 A 149 149
74 Taiwan 29632 C 149 149
75 Taiwan 29633 T 149 149
76 Taiwan 29634 A 149 149
77 Taiwan 29635 C 149 149
78 Taiwan 29636 A 149 149
79 Taiwan 29637 T 149 149
80 Taiwan 29638 A 149 149
81 Taiwan 29639 G 149 149
82 Taiwan 29640 C 149 149
83 Taiwan 29641 A 149 149
84 Taiwan 29642 C T 149 148 Gln29*
85 Taiwan 29643 A 149 149
86 Taiwan 29644 A 149 149
87 Taiwan 29645 G T 149 148 Val30Leu
88 Taiwan 29646 T 149 149
89 Taiwan 29647 A 149 149
90 Taiwan 29648 G 149 149
91 Taiwan 29649 A 149 149
92 Taiwan 29650 T 149 149
93 Taiwan 29651 G 149 149
94 Taiwan 29652 T 149 149
95 Taiwan 29653 A 149 149
96 Taiwan 29654 G 149 149
97 Taiwan 29655 T 149 149
98 Taiwan 29656 T 149 149
99 Taiwan 29657 A 149 149
100 Taiwan 29658 A 149 149
101 Taiwan 29659 C 149 149
102 Taiwan 29660 T 149 149
103 Taiwan 29661 T 149 149
104 Taiwan 29662 T 149 149
105 Taiwan 29663 A 149 149
106 Taiwan 29664 A 149 149
107 Taiwan 29665 T 149 149
108 Taiwan 29666 C 149 149
109 Taiwan 29667 T 149 149
110 Taiwan 29668 C 149 149
111 Taiwan 29669 A 149 149
112 Taiwan 29670 C 149 149
113 Taiwan 29671 A 149 149
114 Taiwan 29672 T 149 149
115 Taiwan 29673 A 149 149
116 Taiwan 29674 G 149 149