National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                           1 1  
C     3   1                   1        
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16     1                          
P     3                         1      
Q 1   3                                
R     6             1                  
S     6         1                      
T     6                                
V     12             2                  
Y     9   1                           1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Sweden 29558 A 1388 1388
1 Sweden 29559 T 1388 1388
2 Sweden 29560 G 1388 1388
3 Sweden 29561 G 1388 1388
4 Sweden 29562 G 1388 1388
5 Sweden 29563 C 1388 1388
6 Sweden 29564 T 1388 1388
7 Sweden 29565 A G 1388 1387 Tyr3Cys
8 Sweden 29566 T C 1388 1387 Tyr3Tyr
9 Sweden 29567 A 1388 1388
10 Sweden 29568 T 1388 1388
11 Sweden 29569 A 1388 1388
12 Sweden 29570 A 1388 1388
13 Sweden 29571 A 1388 1388
14 Sweden 29572 C 1388 1388
15 Sweden 29573 G 1388 1388
16 Sweden 29574 T 1388 1388
17 Sweden 29575 T 1388 1388
18 Sweden 29576 T 1388 1388
19 Sweden 29577 T 1388 1388
20 Sweden 29578 C 1388 1388
21 Sweden 29579 G 1388 1388
22 Sweden 29580 C 1388 1388
23 Sweden 29581 T 1388 1388
24 Sweden 29582 T 1388 1388
25 Sweden 29583 T 1388 1388
26 Sweden 29584 T 1388 1388
27 Sweden 29585 C T 1388 1386 Pro10Ser
28 Sweden 29586 C 1388 1388
29 Sweden 29587 G 1388 1388
30 Sweden 29588 T 1388 1388
31 Sweden 29589 T 1388 1388
32 Sweden 29590 T 1388 1388
33 Sweden 29591 A 1388 1388
34 Sweden 29592 C 1388 1388
35 Sweden 29593 G 1388 1388
36 Sweden 29594 A 1388 1388
37 Sweden 29595 T 1388 1388
38 Sweden 29596 A 1388 1388
39 Sweden 29597 T 1388 1388
40 Sweden 29598 A 1388 1388
41 Sweden 29599 T 1388 1388
42 Sweden 29600 A G 1388 1387 Ser15Gly
43 Sweden 29601 G 1388 1388
44 Sweden 29602 T 1388 1388
45 Sweden 29603 C 1388 1388
46 Sweden 29604 T 1388 1388
47 Sweden 29605 A 1388 1388
48 Sweden 29606 C 1388 1388
49 Sweden 29607 T 1388 1388
50 Sweden 29608 C 1388 1388
51 Sweden 29609 T 1388 1388
52 Sweden 29610 T 1388 1388
53 Sweden 29611 G 1388 1388
54 Sweden 29612 T C 1388 1387 Cys19Arg
55 Sweden 29613 G 1388 1388
56 Sweden 29614 C T 1388 1386 Cys19Cys
57 Sweden 29615 A 1388 1388
58 Sweden 29616 G 1388 1388
59 Sweden 29617 A 1388 1388
60 Sweden 29618 A 1388 1388
61 Sweden 29619 T 1388 1388
62 Sweden 29620 G 1388 1388
63 Sweden 29621 A 1388 1388
64 Sweden 29622 A 1388 1388
65 Sweden 29623 T 1388 1388
66 Sweden 29624 T 1388 1388
67 Sweden 29625 C 1388 1388
68 Sweden 29626 T 1388 1388
69 Sweden 29627 C 1388 1388
70 Sweden 29628 G T 1388 1387 Arg24Leu
71 Sweden 29629 T 1388 1388
72 Sweden 29630 A 1388 1388
73 Sweden 29631 A 1388 1388
74 Sweden 29632 C 1388 1388
75 Sweden 29633 T 1388 1388
76 Sweden 29634 A 1388 1388
77 Sweden 29635 C 1388 1388
78 Sweden 29636 A 1388 1388
79 Sweden 29637 T 1388 1388
80 Sweden 29638 A 1388 1388
81 Sweden 29639 G A 1388 1387 Ala28Thr
82 Sweden 29640 C T 1388 1387 Ala28Val
83 Sweden 29641 A 1388 1388
84 Sweden 29642 C T 1388 1387 Gln29*
85 Sweden 29643 A 1388 1388
86 Sweden 29644 A 1388 1388
87 Sweden 29645 G T 1388 1256 Val30Leu
88 Sweden 29646 T 1388 1388
89 Sweden 29647 A 1388 1388
90 Sweden 29648 G 1388 1388
91 Sweden 29649 A 1388 1388
92 Sweden 29650 T 1388 1388
93 Sweden 29651 G T 1388 1386 Val32Leu
94 Sweden 29652 T 1388 1388
95 Sweden 29653 A 1388 1388
96 Sweden 29654 G 1388 1388
97 Sweden 29655 T 1388 1388
98 Sweden 29656 T 1388 1388
99 Sweden 29657 A G 1388 1387 Asn34Asp
100 Sweden 29658 A 1388 1388
101 Sweden 29659 C 1388 1388
102 Sweden 29660 T 1388 1388
103 Sweden 29661 T 1388 1388
104 Sweden 29662 T 1388 1388
105 Sweden 29663 A 1388 1388
106 Sweden 29664 A 1388 1388
107 Sweden 29665 T 1388 1388
108 Sweden 29666 C 1387 1387
109 Sweden 29667 T 1387 1387
110 Sweden 29668 C 1387 1387
111 Sweden 29669 A 1387 1387
112 Sweden 29670 C 1387 1387
113 Sweden 29671 A 1387 1387
114 Sweden 29672 T 1387 1387
115 Sweden 29673 A 1387 1387
116 Sweden 29674 G 1387 1387