National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16     1                          
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Suriname 29558 A 62 62
1 Suriname 29559 T 62 62
2 Suriname 29560 G 62 62
3 Suriname 29561 G 62 62
4 Suriname 29562 G 62 62
5 Suriname 29563 C 62 62
6 Suriname 29564 T 62 62
7 Suriname 29565 A 62 62
8 Suriname 29566 T 62 62
9 Suriname 29567 A 62 62
10 Suriname 29568 T 62 62
11 Suriname 29569 A 62 62
12 Suriname 29570 A 62 62
13 Suriname 29571 A 62 62
14 Suriname 29572 C 62 62
15 Suriname 29573 G 62 62
16 Suriname 29574 T 62 62
17 Suriname 29575 T 62 62
18 Suriname 29576 T 62 62
19 Suriname 29577 T 62 62
20 Suriname 29578 C 62 62
21 Suriname 29579 G 62 62
22 Suriname 29580 C 62 62
23 Suriname 29581 T 62 62
24 Suriname 29582 T 62 62
25 Suriname 29583 T 62 62
26 Suriname 29584 T 62 62
27 Suriname 29585 C 62 62
28 Suriname 29586 C 62 62
29 Suriname 29587 G 62 62
30 Suriname 29588 T 62 62
31 Suriname 29589 T 62 62
32 Suriname 29590 T 62 62
33 Suriname 29591 A 62 62
34 Suriname 29592 C 62 62
35 Suriname 29593 G 62 62
36 Suriname 29594 A 62 62
37 Suriname 29595 T 62 62
38 Suriname 29596 A 62 62
39 Suriname 29597 T 62 62
40 Suriname 29598 A 62 62
41 Suriname 29599 T 62 62
42 Suriname 29600 A 62 62
43 Suriname 29601 G 62 62
44 Suriname 29602 T 62 62
45 Suriname 29603 C 62 62
46 Suriname 29604 T 62 62
47 Suriname 29605 A 62 62
48 Suriname 29606 C 62 62
49 Suriname 29607 T 62 62
50 Suriname 29608 C 62 62
51 Suriname 29609 T 62 62
52 Suriname 29610 T 62 62
53 Suriname 29611 G 62 62
54 Suriname 29612 T 62 62
55 Suriname 29613 G 62 62
56 Suriname 29614 C 62 62
57 Suriname 29615 A 62 62
58 Suriname 29616 G 62 62
59 Suriname 29617 A 62 62
60 Suriname 29618 A 62 62
61 Suriname 29619 T 62 62
62 Suriname 29620 G 62 62
63 Suriname 29621 A 62 62
64 Suriname 29622 A 62 62
65 Suriname 29623 T 62 62
66 Suriname 29624 T 62 62
67 Suriname 29625 C 62 62
68 Suriname 29626 T 62 62
69 Suriname 29627 C 62 62
70 Suriname 29628 G 62 62
71 Suriname 29629 T 62 62
72 Suriname 29630 A 62 62
73 Suriname 29631 A 62 62
74 Suriname 29632 C 62 62
75 Suriname 29633 T 62 62
76 Suriname 29634 A 62 62
77 Suriname 29635 C 62 62
78 Suriname 29636 A 62 62
79 Suriname 29637 T 62 62
80 Suriname 29638 A 62 62
81 Suriname 29639 G 62 62
82 Suriname 29640 C 62 62
83 Suriname 29641 A 62 62
84 Suriname 29642 C 62 62
85 Suriname 29643 A 62 62
86 Suriname 29644 A 62 62
87 Suriname 29645 G 62 62
88 Suriname 29646 T 62 62
89 Suriname 29647 A 62 62
90 Suriname 29648 G 62 62
91 Suriname 29649 A 62 62
92 Suriname 29650 T 62 62
93 Suriname 29651 G 62 62
94 Suriname 29652 T 62 62
95 Suriname 29653 A 62 62
96 Suriname 29654 G 62 62
97 Suriname 29655 T 62 62
98 Suriname 29656 T 62 62
99 Suriname 29657 A 62 62
100 Suriname 29658 A 62 62
101 Suriname 29659 C 62 62
102 Suriname 29660 T 62 62
103 Suriname 29661 T 62 62
104 Suriname 29662 T 62 62
105 Suriname 29663 A G 62 61 Asn36Asp
106 Suriname 29664 A 62 62
107 Suriname 29665 T 62 62
108 Suriname 29666 C 62 62
109 Suriname 29667 T 62 62
110 Suriname 29668 C 61 61
111 Suriname 29669 A 61 61
112 Suriname 29670 C 61 61
113 Suriname 29671 A 61 61
114 Suriname 29672 T 61 61
115 Suriname 29673 A 61 61
116 Suriname 29674 G 61 61