National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Sri_Lanka 29558 A 54 54
1 Sri_Lanka 29559 T 54 54
2 Sri_Lanka 29560 G 54 54
3 Sri_Lanka 29561 G 54 54
4 Sri_Lanka 29562 G 54 54
5 Sri_Lanka 29563 C 54 54
6 Sri_Lanka 29564 T 54 54
7 Sri_Lanka 29565 A 54 54
8 Sri_Lanka 29566 T 54 54
9 Sri_Lanka 29567 A 54 54
10 Sri_Lanka 29568 T 54 54
11 Sri_Lanka 29569 A 54 54
12 Sri_Lanka 29570 A 54 54
13 Sri_Lanka 29571 A 54 54
14 Sri_Lanka 29572 C 54 54
15 Sri_Lanka 29573 G 54 54
16 Sri_Lanka 29574 T 54 54
17 Sri_Lanka 29575 T 54 54
18 Sri_Lanka 29576 T 54 54
19 Sri_Lanka 29577 T 54 54
20 Sri_Lanka 29578 C 58 58
21 Sri_Lanka 29579 G 58 58
22 Sri_Lanka 29580 C 59 59
23 Sri_Lanka 29581 T 59 59
24 Sri_Lanka 29582 T 59 59
25 Sri_Lanka 29583 T 59 59
26 Sri_Lanka 29584 T 59 59
27 Sri_Lanka 29585 C 59 59
28 Sri_Lanka 29586 C 59 59
29 Sri_Lanka 29587 G 59 59
30 Sri_Lanka 29588 T 59 59
31 Sri_Lanka 29589 T 59 59
32 Sri_Lanka 29590 T 59 59
33 Sri_Lanka 29591 A 60 60
34 Sri_Lanka 29592 C 60 60
35 Sri_Lanka 29593 G 60 60
36 Sri_Lanka 29594 A 60 60
37 Sri_Lanka 29595 T 60 60
38 Sri_Lanka 29596 A 60 60
39 Sri_Lanka 29597 T 60 60
40 Sri_Lanka 29598 A 60 60
41 Sri_Lanka 29599 T 60 60
42 Sri_Lanka 29600 A 60 60
43 Sri_Lanka 29601 G 60 60
44 Sri_Lanka 29602 T 60 60
45 Sri_Lanka 29603 C 60 60
46 Sri_Lanka 29604 T 60 60
47 Sri_Lanka 29605 A 60 60
48 Sri_Lanka 29606 C 60 60
49 Sri_Lanka 29607 T 60 60
50 Sri_Lanka 29608 C 60 60
51 Sri_Lanka 29609 T 60 60
52 Sri_Lanka 29610 T 60 60
53 Sri_Lanka 29611 G 60 60
54 Sri_Lanka 29612 T 60 60
55 Sri_Lanka 29613 G 60 60
56 Sri_Lanka 29614 C 60 60
57 Sri_Lanka 29615 A 60 60
58 Sri_Lanka 29616 G 60 60
59 Sri_Lanka 29617 A 60 60
60 Sri_Lanka 29618 A 60 60
61 Sri_Lanka 29619 T 60 60
62 Sri_Lanka 29620 G 60 60
63 Sri_Lanka 29621 A 60 60
64 Sri_Lanka 29622 A 60 60
65 Sri_Lanka 29623 T 60 60
66 Sri_Lanka 29624 T 60 60
67 Sri_Lanka 29625 C 60 60
68 Sri_Lanka 29626 T 60 60
69 Sri_Lanka 29627 C 60 60
70 Sri_Lanka 29628 G 60 60
71 Sri_Lanka 29629 T 60 60
72 Sri_Lanka 29630 A 60 60
73 Sri_Lanka 29631 A 60 60
74 Sri_Lanka 29632 C 60 60
75 Sri_Lanka 29633 T 60 60
76 Sri_Lanka 29634 A 60 60
77 Sri_Lanka 29635 C 60 60
78 Sri_Lanka 29636 A 60 60
79 Sri_Lanka 29637 T 60 59
80 Sri_Lanka 29638 A 60 59
81 Sri_Lanka 29639 G 60 59
82 Sri_Lanka 29640 C 60 60
83 Sri_Lanka 29641 A 60 60
84 Sri_Lanka 29642 C 60 60
85 Sri_Lanka 29643 A 60 60
86 Sri_Lanka 29644 A 60 60
87 Sri_Lanka 29645 G 60 60
88 Sri_Lanka 29646 T 60 60
89 Sri_Lanka 29647 A 60 60
90 Sri_Lanka 29648 G 60 60
91 Sri_Lanka 29649 A 60 60
92 Sri_Lanka 29650 T 60 60
93 Sri_Lanka 29651 G 60 60
94 Sri_Lanka 29652 T 60 60
95 Sri_Lanka 29653 A 60 60
96 Sri_Lanka 29654 G 60 60
97 Sri_Lanka 29655 T 60 60
98 Sri_Lanka 29656 T 60 60
99 Sri_Lanka 29657 A 60 60
100 Sri_Lanka 29658 A 60 60
101 Sri_Lanka 29659 C 60 60
102 Sri_Lanka 29660 T 60 60
103 Sri_Lanka 29661 T 60 60
104 Sri_Lanka 29662 T 60 60
105 Sri_Lanka 29663 A 60 60
106 Sri_Lanka 29664 A 60 60
107 Sri_Lanka 29665 T 60 60
108 Sri_Lanka 29666 C 60 60
109 Sri_Lanka 29667 T 60 60
110 Sri_Lanka 29668 C 60 60
111 Sri_Lanka 29669 A 60 60
112 Sri_Lanka 29670 C 60 60
113 Sri_Lanka 29671 A 60 60
114 Sri_Lanka 29672 T 60 60
115 Sri_Lanka 29673 A 60 60
116 Sri_Lanka 29674 G 60 60