National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I K L M N P Q R S T V Y
*     2                                  
-     117                                  
?                                        
A     6                               1  
C     3   1                     1        
D     3                   1              
F     12                                  
G     3                                  
I     9                               1  
K                                        
L     12                                  
M     6             1                    
N     16             1     1              
P     3                     1     1      
Q     3                                  
R     6                                  
S     6       1                          
T     6                 1           1    
V     12               1                  
Y     9                                  

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 South_Korea 29558 A 1624 1624
1 South_Korea 29559 T 1624 1624
2 South_Korea 29560 G 1624 1624
3 South_Korea 29561 G 1624 1624
4 South_Korea 29562 G 1624 1624
5 South_Korea 29563 C 1624 1624
6 South_Korea 29564 T 1624 1624
7 South_Korea 29565 A 1624 1624
8 South_Korea 29566 T 1624 1624
9 South_Korea 29567 A G 1624 1623 Ile4Val
10 South_Korea 29568 T 1624 1624
11 South_Korea 29569 A 1624 1624
12 South_Korea 29570 A 1624 1624
13 South_Korea 29571 A 1624 1624
14 South_Korea 29572 C A 1624 1623 Asn5Lys
15 South_Korea 29573 G 1624 1624
16 South_Korea 29574 T 1624 1624
17 South_Korea 29575 T 1624 1624
18 South_Korea 29576 T 1624 1624
19 South_Korea 29577 T 1624 1624
20 South_Korea 29578 C 1624 1624
21 South_Korea 29579 G 1624 1624
22 South_Korea 29580 C T 1624 1623 Ala8Val
23 South_Korea 29581 T 1624 1624
24 South_Korea 29582 T 1624 1624
25 South_Korea 29583 T 1624 1624
26 South_Korea 29584 T 1624 1624
27 South_Korea 29585 C T 1624 1622 Pro10Ser
28 South_Korea 29586 C 1624 1624
29 South_Korea 29587 G A 1624 1619 Pro10Pro
30 South_Korea 29588 T 1624 1624
31 South_Korea 29589 T 1624 1624
32 South_Korea 29590 T 1624 1624
33 South_Korea 29591 A 1624 1624
34 South_Korea 29592 C T 1624 1622 Thr12Met
35 South_Korea 29593 G A 1624 1618 Thr12Thr
36 South_Korea 29594 A 1624 1624
37 South_Korea 29595 T 1624 1624
38 South_Korea 29596 A 1624 1624
39 South_Korea 29597 T 1624 1624
40 South_Korea 29598 A 1624 1624
41 South_Korea 29599 T 1624 1624
42 South_Korea 29600 A 1624 1624
43 South_Korea 29601 G 1628 1628
44 South_Korea 29602 T 1628 1628
45 South_Korea 29603 C 1628 1628
46 South_Korea 29604 T 1628 1628
47 South_Korea 29605 A 1628 1627
48 South_Korea 29606 C 1629 1629
49 South_Korea 29607 T 1629 1629
50 South_Korea 29608 C 1629 1629
51 South_Korea 29609 T 1629 1629
52 South_Korea 29610 T 1629 1629
53 South_Korea 29611 G 1629 1629
54 South_Korea 29612 T C 1629 1628 Cys19Arg
55 South_Korea 29613 G 1629 1629
56 South_Korea 29614 C T 1629 1627 Cys19Cys
57 South_Korea 29615 A 1629 1628
58 South_Korea 29616 G 1629 1628
59 South_Korea 29617 A 1629 1628
60 South_Korea 29618 A 1629 1628
61 South_Korea 29619 T A 1629 1627 Met21Lys
62 South_Korea 29620 G 1629 1628
63 South_Korea 29621 A 1629 1628
64 South_Korea 29622 A 1629 1628
65 South_Korea 29623 T 1629 1628
66 South_Korea 29624 T 1629 1628
67 South_Korea 29625 C T 1629 1595 Ser23Phe
68 South_Korea 29626 T 1629 1628
69 South_Korea 29627 C 1629 1628
70 South_Korea 29628 G 1629 1628
71 South_Korea 29629 T 1629 1628
72 South_Korea 29630 A 1629 1628
73 South_Korea 29631 A 1629 1628
74 South_Korea 29632 C 1629 1628
75 South_Korea 29633 T 1629 1627
76 South_Korea 29634 A 1630 1628
77 South_Korea 29635 C 1630 1628
78 South_Korea 29636 A 1630 1628
79 South_Korea 29637 T 1630 1628
80 South_Korea 29638 A 1630 1628
81 South_Korea 29639 G 1630 1628
82 South_Korea 29640 C 1630 1628
83 South_Korea 29641 A 1630 1628
84 South_Korea 29642 C 1630 1628
85 South_Korea 29643 A 1630 1628
86 South_Korea 29644 A 1630 1630
87 South_Korea 29645 G T 1630 1618 Val30Leu
88 South_Korea 29646 T 1630 1630
89 South_Korea 29647 A 1630 1630
90 South_Korea 29648 G A 1630 1629 Asp31Asn
91 South_Korea 29649 A 1630 1630
92 South_Korea 29650 T 1630 1630
93 South_Korea 29651 G 1630 1630
94 South_Korea 29652 T 1630 1630
95 South_Korea 29653 A 1630 1630
96 South_Korea 29654 G 1630 1630
97 South_Korea 29655 T 1630 1630
98 South_Korea 29656 T 1630 1630
99 South_Korea 29657 A 1630 1630
100 South_Korea 29658 A 1630 1630
101 South_Korea 29659 C 1630 1630
102 South_Korea 29660 T 1630 1630
103 South_Korea 29661 T 1630 1630
104 South_Korea 29662 T 1630 1630
105 South_Korea 29663 A 1630 1630
106 South_Korea 29664 A 1630 1630
107 South_Korea 29665 T C 1630 1629 Asn36Asn
108 South_Korea 29666 C 1630 1630
109 South_Korea 29667 T 1629 1629
110 South_Korea 29668 C 1629 1629
111 South_Korea 29669 A 1629 1629
112 South_Korea 29670 C 1628 1628
113 South_Korea 29671 A 1628 1628
114 South_Korea 29672 T 1628 1628
115 South_Korea 29673 A 1628 1628
116 South_Korea 29674 G 1628 1628