National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6 1                           2  
C     3   1                            
D     3 1                              
F     12             1                  
G     3                                
I     9                             1  
L     12       1             1       1  
M     6           1                    
N     16                 2              
P     3             1           1      
Q 1   3                                
R     6   1                            
S     6       1 1                      
T     6           1                    
V     12 1                           1  
Y     9                               1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Africa 29558 A 3003 3003
1 South_Africa 29559 T 3003 3003
2 South_Africa 29560 G T 3004 3003 Met1?
3 South_Africa 29561 G 3004 3004
4 South_Africa 29562 G 3004 3004
5 South_Africa 29563 C 3004 3004
6 South_Africa 29564 T 3004 3004
7 South_Africa 29565 A 3005 3005
8 South_Africa 29566 T 3005 3005
9 South_Africa 29567 A G 3006 3005 Ile4Val
10 South_Africa 29568 T 3006 3006
11 South_Africa 29569 A 3006 3006
12 South_Africa 29570 A 3006 3006
13 South_Africa 29571 A 3006 3006
14 South_Africa 29572 C 3006 3006
15 South_Africa 29573 G 3006 3006
16 South_Africa 29574 T 3006 3006
17 South_Africa 29575 T 3006 3006
18 South_Africa 29576 T 3006 3006
19 South_Africa 29577 T 3006 3006
20 South_Africa 29578 C 3006 3006
21 South_Africa 29579 G 3006 3006
22 South_Africa 29580 C T 3006 3003 Ala8Val
23 South_Africa 29581 T C 3006 3005 Ala8Ala
24 South_Africa 29582 T 3006 3006
25 South_Africa 29583 T 3006 3005
26 South_Africa 29584 T 3006 3003
27 South_Africa 29585 C T 3006 2999 Pro10Ser
28 South_Africa 29586 C T 3006 3002 Pro10Leu
29 South_Africa 29587 G 3006 3004
30 South_Africa 29588 T 3006 3004
31 South_Africa 29589 T 3006 3004
32 South_Africa 29590 T 3005 3003
33 South_Africa 29591 A 3005 3003
34 South_Africa 29592 C 3005 3003
35 South_Africa 29593 G 3005 3003
36 South_Africa 29594 A 3005 3003
37 South_Africa 29595 T 2995 2991
38 South_Africa 29596 A 2995 2989
39 South_Africa 29597 T 2995 2989
40 South_Africa 29598 A 2995 2989
41 South_Africa 29599 T 2995 2989
42 South_Africa 29600 A G 2994 2986 Ser15Gly
43 South_Africa 29601 G 2994 2990
44 South_Africa 29602 T 2994 2991
45 South_Africa 29603 C 2992 2989
46 South_Africa 29604 T A 2992 2988 Leu16Gln
47 South_Africa 29605 A 2993 2989
48 South_Africa 29606 C 2993 2990
49 South_Africa 29607 T 2993 2992
50 South_Africa 29608 C 2993 2992
51 South_Africa 29609 T 2993 2991
52 South_Africa 29610 T 2992 2989
53 South_Africa 29611 G 2992 2988
54 South_Africa 29612 T 2992 2988
55 South_Africa 29613 G 2992 2988
56 South_Africa 29614 C T 2992 2984 Cys19Cys
57 South_Africa 29615 A 2991 2989
58 South_Africa 29616 G 2990 2988
59 South_Africa 29617 A 2990 2988
60 South_Africa 29618 A 2990 2988
61 South_Africa 29619 T 2990 2988
62 South_Africa 29620 G 2990 2988
63 South_Africa 29621 A 2989 2987
64 South_Africa 29622 A 2989 2987
65 South_Africa 29623 T C 2989 2979 Asn22Asn
66 South_Africa 29624 T 2989 2987
67 South_Africa 29625 C T 2988 2985 Ser23Phe
68 South_Africa 29626 T 2988 2986
69 South_Africa 29627 C T 2987 2979 Arg24Cys
70 South_Africa 29628 G 2987 2986
71 South_Africa 29629 T 2987 2987
72 South_Africa 29630 A 2986 2986
73 South_Africa 29631 A 2987 2987
74 South_Africa 29632 C 2986 2986
75 South_Africa 29633 T 2985 2985
76 South_Africa 29634 A 2984 2984
77 South_Africa 29635 C T 2984 2982 Tyr26Tyr
78 South_Africa 29636 A 2984 2984
79 South_Africa 29637 T 2984 2984
80 South_Africa 29638 A 2984 2984
81 South_Africa 29639 G 2982 2982
82 South_Africa 29640 C T 2982 2980 Ala28Val
83 South_Africa 29641 A 2982 2982
84 South_Africa 29642 C T 2981 2978 Gln29*
85 South_Africa 29643 A 2980 2980
86 South_Africa 29644 A 2980 2980
87 South_Africa 29645 G 2980 2979
88 South_Africa 29646 T C 2980 2978 Val30Ala
89 South_Africa 29647 A 2979 2978
90 South_Africa 29648 G 2979 2978
91 South_Africa 29649 A C 2978 2976 Asp31Ala
92 South_Africa 29650 T 2978 2977
93 South_Africa 29651 G 2978 2977
94 South_Africa 29652 T 2978 2977
95 South_Africa 29653 A G 2978 2974 Val32Val
96 South_Africa 29654 G 2978 2978
97 South_Africa 29655 T 2977 2977
98 South_Africa 29656 T 2977 2977
99 South_Africa 29657 A 2977 2977
100 South_Africa 29658 A 2977 2977
101 South_Africa 29659 C T 2975 2974 Asn34Asn
102 South_Africa 29660 T C 2975 2974 Phe35Leu
103 South_Africa 29661 T 2975 2975
104 South_Africa 29662 T 2975 2974
105 South_Africa 29663 A 2974 2973
106 South_Africa 29664 A 2974 2973
107 South_Africa 29665 T 2974 2973
108 South_Africa 29666 C T,G 2974 2970 Leu37Phe-p.Leu37Val
109 South_Africa 29667 T 2971 2971
110 South_Africa 29668 C 2968 2968
111 South_Africa 29669 A 2968 2968
112 South_Africa 29670 C T 2966 2965 Thr38Ile
113 South_Africa 29671 A 2966 2966
114 South_Africa 29672 T 2965 2965
115 South_Africa 29673 A 2965 2965
116 South_Africa 29674 G 2965 2965