National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                             1  
L     12                                
M     6           1                    
N     16                 1              
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Slovenia 29558 A 148 148
1 Slovenia 29559 T 148 148
2 Slovenia 29560 G T 148 147 Met1?
3 Slovenia 29561 G 148 148
4 Slovenia 29562 G 148 148
5 Slovenia 29563 C 148 148
6 Slovenia 29564 T 148 148
7 Slovenia 29565 A 148 148
8 Slovenia 29566 T 148 148
9 Slovenia 29567 A G 148 147 Ile4Val
10 Slovenia 29568 T 148 148
11 Slovenia 29569 A 148 148
12 Slovenia 29570 A 148 148
13 Slovenia 29571 A 148 148
14 Slovenia 29572 C T 148 147 Asn5Asn
15 Slovenia 29573 G 148 148
16 Slovenia 29574 T 148 148
17 Slovenia 29575 T 148 148
18 Slovenia 29576 T 148 148
19 Slovenia 29577 T 148 148
20 Slovenia 29578 C 148 148
21 Slovenia 29579 G 148 148
22 Slovenia 29580 C 148 148
23 Slovenia 29581 T 148 148
24 Slovenia 29582 T 148 148
25 Slovenia 29583 T 148 148
26 Slovenia 29584 T 148 148
27 Slovenia 29585 C 148 148
28 Slovenia 29586 C 148 148
29 Slovenia 29587 G 148 148
30 Slovenia 29588 T 148 148
31 Slovenia 29589 T 148 148
32 Slovenia 29590 T 148 148
33 Slovenia 29591 A 148 148
34 Slovenia 29592 C 148 148
35 Slovenia 29593 G 148 148
36 Slovenia 29594 A 148 148
37 Slovenia 29595 T 148 148
38 Slovenia 29596 A 148 148
39 Slovenia 29597 T 148 148
40 Slovenia 29598 A 148 148
41 Slovenia 29599 T 148 148
42 Slovenia 29600 A 148 148
43 Slovenia 29601 G 148 148
44 Slovenia 29602 T 148 148
45 Slovenia 29603 C 148 148
46 Slovenia 29604 T 148 148
47 Slovenia 29605 A 148 148
48 Slovenia 29606 C 148 148
49 Slovenia 29607 T 148 148
50 Slovenia 29608 C 148 148
51 Slovenia 29609 T 148 148
52 Slovenia 29610 T 148 148
53 Slovenia 29611 G 148 148
54 Slovenia 29612 T 148 148
55 Slovenia 29613 G 148 148
56 Slovenia 29614 C 148 148
57 Slovenia 29615 A 148 148
58 Slovenia 29616 G 148 148
59 Slovenia 29617 A 148 148
60 Slovenia 29618 A 148 148
61 Slovenia 29619 T 148 148
62 Slovenia 29620 G 148 148
63 Slovenia 29621 A 148 148
64 Slovenia 29622 A 148 148
65 Slovenia 29623 T 148 148
66 Slovenia 29624 T 148 148
67 Slovenia 29625 C 148 148
68 Slovenia 29626 T 148 148
69 Slovenia 29627 C 148 148
70 Slovenia 29628 G 148 148
71 Slovenia 29629 T 148 148
72 Slovenia 29630 A 148 148
73 Slovenia 29631 A 148 148
74 Slovenia 29632 C 148 148
75 Slovenia 29633 T 148 148
76 Slovenia 29634 A 148 148
77 Slovenia 29635 C 148 148
78 Slovenia 29636 A 148 148
79 Slovenia 29637 T 148 148
80 Slovenia 29638 A 148 148
81 Slovenia 29639 G 148 148
82 Slovenia 29640 C 148 148
83 Slovenia 29641 A 148 148
84 Slovenia 29642 C 148 148
85 Slovenia 29643 A 148 148
86 Slovenia 29644 A 148 148
87 Slovenia 29645 G 148 148
88 Slovenia 29646 T 148 148
89 Slovenia 29647 A 148 148
90 Slovenia 29648 G 148 148
91 Slovenia 29649 A 148 148
92 Slovenia 29650 T 148 148
93 Slovenia 29651 G 148 148
94 Slovenia 29652 T 148 148
95 Slovenia 29653 A 148 148
96 Slovenia 29654 G 148 148
97 Slovenia 29655 T 148 148
98 Slovenia 29656 T 148 148
99 Slovenia 29657 A 148 148
100 Slovenia 29658 A 148 148
101 Slovenia 29659 C 148 148
102 Slovenia 29660 T 148 148
103 Slovenia 29661 T 148 148
104 Slovenia 29662 T 148 148
105 Slovenia 29663 A 148 148
106 Slovenia 29664 A 148 148
107 Slovenia 29665 T 148 148
108 Slovenia 29666 C 148 148
109 Slovenia 29667 T 148 148
110 Slovenia 29668 C 148 148
111 Slovenia 29669 A 148 148
112 Slovenia 29670 C 148 148
113 Slovenia 29671 A 148 148
114 Slovenia 29672 T 148 148
115 Slovenia 29673 A 148 148
116 Slovenia 29674 G 148 148