National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                             1  
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                         1      
Q     3                                
R     6                                
S     6                                
T     6                                
V     12             1                  
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Slovakia 29558 A 95 95
1 Slovakia 29559 T 95 95
2 Slovakia 29560 G 95 95
3 Slovakia 29561 G 95 95
4 Slovakia 29562 G 95 95
5 Slovakia 29563 C 95 95
6 Slovakia 29564 T 95 95
7 Slovakia 29565 A 95 95
8 Slovakia 29566 T 95 95
9 Slovakia 29567 A 95 95
10 Slovakia 29568 T 95 95
11 Slovakia 29569 A 95 95
12 Slovakia 29570 A 95 95
13 Slovakia 29571 A 95 95
14 Slovakia 29572 C 95 95
15 Slovakia 29573 G 95 95
16 Slovakia 29574 T 95 95
17 Slovakia 29575 T 95 95
18 Slovakia 29576 T 95 95
19 Slovakia 29577 T 95 95
20 Slovakia 29578 C 95 95
21 Slovakia 29579 G 95 95
22 Slovakia 29580 C T 95 85 Ala8Val
23 Slovakia 29581 T 95 95
24 Slovakia 29582 T 95 95
25 Slovakia 29583 T 95 95
26 Slovakia 29584 T 95 95
27 Slovakia 29585 C T 95 94 Pro10Ser
28 Slovakia 29586 C 95 95
29 Slovakia 29587 G 95 95
30 Slovakia 29588 T 95 95
31 Slovakia 29589 T 95 95
32 Slovakia 29590 T 95 95
33 Slovakia 29591 A 95 95
34 Slovakia 29592 C 95 95
35 Slovakia 29593 G 95 95
36 Slovakia 29594 A 95 95
37 Slovakia 29595 T 95 95
38 Slovakia 29596 A 95 95
39 Slovakia 29597 T 95 95
40 Slovakia 29598 A 95 95
41 Slovakia 29599 T 95 95
42 Slovakia 29600 A 95 95
43 Slovakia 29601 G 95 95
44 Slovakia 29602 T 95 95
45 Slovakia 29603 C 95 95
46 Slovakia 29604 T 95 95
47 Slovakia 29605 A 95 95
48 Slovakia 29606 C 95 95
49 Slovakia 29607 T 95 95
50 Slovakia 29608 C 95 95
51 Slovakia 29609 T 95 95
52 Slovakia 29610 T 95 95
53 Slovakia 29611 G 95 95
54 Slovakia 29612 T 95 95
55 Slovakia 29613 G 95 95
56 Slovakia 29614 C 95 95
57 Slovakia 29615 A 95 95
58 Slovakia 29616 G 95 95
59 Slovakia 29617 A 95 95
60 Slovakia 29618 A 95 95
61 Slovakia 29619 T 95 95
62 Slovakia 29620 G 95 95
63 Slovakia 29621 A 95 95
64 Slovakia 29622 A 95 95
65 Slovakia 29623 T 95 95
66 Slovakia 29624 T 95 95
67 Slovakia 29625 C 95 95
68 Slovakia 29626 T 95 95
69 Slovakia 29627 C 95 95
70 Slovakia 29628 G 95 95
71 Slovakia 29629 T 95 95
72 Slovakia 29630 A 95 95
73 Slovakia 29631 A 95 95
74 Slovakia 29632 C 95 95
75 Slovakia 29633 T 95 95
76 Slovakia 29634 A 95 95
77 Slovakia 29635 C 95 95
78 Slovakia 29636 A 95 95
79 Slovakia 29637 T 95 95
80 Slovakia 29638 A 95 95
81 Slovakia 29639 G 95 95
82 Slovakia 29640 C 95 95
83 Slovakia 29641 A 95 95
84 Slovakia 29642 C 95 95
85 Slovakia 29643 A 95 95
86 Slovakia 29644 A 95 95
87 Slovakia 29645 G T 95 93 Val30Leu
88 Slovakia 29646 T 95 95
89 Slovakia 29647 A 95 95
90 Slovakia 29648 G 95 95
91 Slovakia 29649 A 95 95
92 Slovakia 29650 T 95 95
93 Slovakia 29651 G 95 95
94 Slovakia 29652 T 95 95
95 Slovakia 29653 A 95 95
96 Slovakia 29654 G 95 95
97 Slovakia 29655 T 95 95
98 Slovakia 29656 T 95 95
99 Slovakia 29657 A 95 95
100 Slovakia 29658 A 95 95
101 Slovakia 29659 C 95 95
102 Slovakia 29660 T 95 95
103 Slovakia 29661 T 95 95
104 Slovakia 29662 T 95 95
105 Slovakia 29663 A 95 95
106 Slovakia 29664 A 95 95
107 Slovakia 29665 T 95 95
108 Slovakia 29666 C 95 95
109 Slovakia 29667 T 95 95
110 Slovakia 29668 C 95 95
111 Slovakia 29669 A 95 95
112 Slovakia 29670 C 95 95
113 Slovakia 29671 A 95 95
114 Slovakia 29672 T 95 95
115 Slovakia 29673 A 95 95
116 Slovakia 29674 G 95 95