National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                     1          
-     117                                
?                                      
A     6                         1   1  
C     3   1                            
D     3                             1 1
F     12                             1  
G     3                                
I     9                                
L     12                                
M     6                                
N     16                 1       1      
P     3                                
Q 1   3                                
R     6           1 1                  
S     6                                
T     6               1                
V     12             1                  
Y     9   1                            

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Singapore 29558 A 1715 1715
1 Singapore 29559 T 1715 1714
2 Singapore 29560 G 1715 1715
3 Singapore 29561 G 1716 1716
4 Singapore 29562 G 1716 1716
5 Singapore 29563 C 1716 1716
6 Singapore 29564 T 1716 1716
7 Singapore 29565 A 1716 1716
8 Singapore 29566 T 1716 1716
9 Singapore 29567 A 1716 1716
10 Singapore 29568 T 1716 1716
11 Singapore 29569 A 1716 1716
12 Singapore 29570 A 1716 1716
13 Singapore 29571 A 1716 1716
14 Singapore 29572 C 1716 1716
15 Singapore 29573 G 1716 1716
16 Singapore 29574 T 1716 1716
17 Singapore 29575 T 1716 1716
18 Singapore 29576 T 1716 1716
19 Singapore 29577 T 1716 1716
20 Singapore 29578 C 1716 1716
21 Singapore 29579 G 1716 1716
22 Singapore 29580 C 1716 1716
23 Singapore 29581 T 1716 1715
24 Singapore 29582 T 1716 1716
25 Singapore 29583 T 1716 1716
26 Singapore 29584 T 1716 1716
27 Singapore 29585 C 1716 1716
28 Singapore 29586 C 1716 1716
29 Singapore 29587 G 1716 1716
30 Singapore 29588 T G 1715 1713 Phe11Val
31 Singapore 29589 T 1715 1714
32 Singapore 29590 T 1715 1714
33 Singapore 29591 A 1715 1714
34 Singapore 29592 C T 1715 1713 Thr12Met
35 Singapore 29593 G 1714 1713
36 Singapore 29594 A 1714 1713
37 Singapore 29595 T 1714 1713
38 Singapore 29596 A 1714 1712
39 Singapore 29597 T 1714 1713
40 Singapore 29598 A G 1714 1712 Tyr14Cys
41 Singapore 29599 T 1713 1712
42 Singapore 29600 A 1713 1712
43 Singapore 29601 G 1712 1710
44 Singapore 29602 T 1712 1708
45 Singapore 29603 C 1711 1709
46 Singapore 29604 T 1711 1709
47 Singapore 29605 A 1711 1709
48 Singapore 29606 C 1711 1710
49 Singapore 29607 T 1711 1709
50 Singapore 29608 C 1711 1710
51 Singapore 29609 T 1710 1709
52 Singapore 29610 T 1710 1709
53 Singapore 29611 G 1710 1709
54 Singapore 29612 T 1710 1707
55 Singapore 29613 G 1710 1709
56 Singapore 29614 C T 1710 1690 Cys19Cys
57 Singapore 29615 A 1710 1709
58 Singapore 29616 G T 1710 1633 Arg20Ile
59 Singapore 29617 A 1708 1708
60 Singapore 29618 A 1706 1706
61 Singapore 29619 T 1706 1706
62 Singapore 29620 G 1706 1706
63 Singapore 29621 A 1706 1706
64 Singapore 29622 A G 1706 1702 Asn22Ser
65 Singapore 29623 T 1706 1706
66 Singapore 29624 T 1706 1706
67 Singapore 29625 C 1706 1706
68 Singapore 29626 T 1706 1706
69 Singapore 29627 C 1706 1706
70 Singapore 29628 G T 1706 1705 Arg24Leu
71 Singapore 29629 T 1706 1706
72 Singapore 29630 A 1706 1706
73 Singapore 29631 A 1704 1704
74 Singapore 29632 C 1704 1704
75 Singapore 29633 T 1703 1703
76 Singapore 29634 A 1703 1703
77 Singapore 29635 C 1703 1703
78 Singapore 29636 A 1703 1703
79 Singapore 29637 T 1698 1698
80 Singapore 29638 A 1698 1698
81 Singapore 29639 G T 1697 1695 Ala28Ser
82 Singapore 29640 C T 1697 1694 Ala28Val
83 Singapore 29641 A 1697 1697
84 Singapore 29642 C T 1697 1686 Gln29*
85 Singapore 29643 A 1696 1696
86 Singapore 29644 A 1696 1696
87 Singapore 29645 G T 1696 1685 Val30Leu
88 Singapore 29646 T 1696 1696
89 Singapore 29647 A 1692 1690
90 Singapore 29648 G T 1692 1691 Asp31Tyr
91 Singapore 29649 A T 1691 1689 Asp31Val
92 Singapore 29650 T 1691 1690
93 Singapore 29651 G 1691 1690
94 Singapore 29652 T 1691 1690
95 Singapore 29653 A 1689 1689
96 Singapore 29654 G 1687 1687
97 Singapore 29655 T 1685 1685
98 Singapore 29656 T 1684 1684
99 Singapore 29657 A 1684 1684
100 Singapore 29658 A 1684 1684
101 Singapore 29659 C T 1684 1682 Asn34Asn
102 Singapore 29660 T 1684 1684
103 Singapore 29661 T 1684 1684
104 Singapore 29662 T 1684 1684
105 Singapore 29663 A 1684 1684
106 Singapore 29664 A 1684 1684
107 Singapore 29665 T 1681 1681
108 Singapore 29666 C 1666 1666
109 Singapore 29667 T 1664 1663
110 Singapore 29668 C 1661 1659
111 Singapore 29669 A 1661 1659
112 Singapore 29670 C 1661 1661
113 Singapore 29671 A 1661 1660
114 Singapore 29672 T C 1661 1659 Ter39Glnext*?
115 Singapore 29673 A 1658 1658
116 Singapore 29674 G 1658 1658