National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D F G I L M N P Q R S T V Y
*     2                                
-     117                                
?                                      
A     6                                
C     3                                
D     3                                
F     12                                
G     3                                
I     9                                
L     12                                
M     6                                
N     16                                
P     3                                
Q     3                                
R     6                                
S     6                                
T     6                                
V     12                                
Y     9                                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Sierra_Leone 29558 A 11 11
1 Sierra_Leone 29559 T 11 11
2 Sierra_Leone 29560 G 11 11
3 Sierra_Leone 29561 G 11 11
4 Sierra_Leone 29562 G 11 11
5 Sierra_Leone 29563 C 11 11
6 Sierra_Leone 29564 T 11 11
7 Sierra_Leone 29565 A 11 11
8 Sierra_Leone 29566 T 11 11
9 Sierra_Leone 29567 A 11 11
10 Sierra_Leone 29568 T 11 11
11 Sierra_Leone 29569 A 11 11
12 Sierra_Leone 29570 A 11 11
13 Sierra_Leone 29571 A 11 11
14 Sierra_Leone 29572 C 11 11
15 Sierra_Leone 29573 G 11 11
16 Sierra_Leone 29574 T 11 11
17 Sierra_Leone 29575 T 11 11
18 Sierra_Leone 29576 T 11 11
19 Sierra_Leone 29577 T 11 11
20 Sierra_Leone 29578 C 11 11
21 Sierra_Leone 29579 G 11 11
22 Sierra_Leone 29580 C 11 11
23 Sierra_Leone 29581 T 11 11
24 Sierra_Leone 29582 T 11 11
25 Sierra_Leone 29583 T 11 11
26 Sierra_Leone 29584 T 11 11
27 Sierra_Leone 29585 C 11 11
28 Sierra_Leone 29586 C 11 11
29 Sierra_Leone 29587 G 11 11
30 Sierra_Leone 29588 T 11 11
31 Sierra_Leone 29589 T 11 11
32 Sierra_Leone 29590 T 11 11
33 Sierra_Leone 29591 A 11 11
34 Sierra_Leone 29592 C 11 11
35 Sierra_Leone 29593 G 11 11
36 Sierra_Leone 29594 A 11 11
37 Sierra_Leone 29595 T 11 11
38 Sierra_Leone 29596 A 11 11
39 Sierra_Leone 29597 T 11 11
40 Sierra_Leone 29598 A 11 11
41 Sierra_Leone 29599 T 11 11
42 Sierra_Leone 29600 A 11 11
43 Sierra_Leone 29601 G 11 11
44 Sierra_Leone 29602 T 11 11
45 Sierra_Leone 29603 C 11 11
46 Sierra_Leone 29604 T 11 11
47 Sierra_Leone 29605 A 11 11
48 Sierra_Leone 29606 C 11 11
49 Sierra_Leone 29607 T 11 11
50 Sierra_Leone 29608 C 11 11
51 Sierra_Leone 29609 T 11 11
52 Sierra_Leone 29610 T 11 11
53 Sierra_Leone 29611 G 11 11
54 Sierra_Leone 29612 T 11 11
55 Sierra_Leone 29613 G 11 11
56 Sierra_Leone 29614 C 11 11
57 Sierra_Leone 29615 A 11 11
58 Sierra_Leone 29616 G 11 11
59 Sierra_Leone 29617 A 11 11
60 Sierra_Leone 29618 A 11 11
61 Sierra_Leone 29619 T 11 11
62 Sierra_Leone 29620 G 11 11
63 Sierra_Leone 29621 A 11 11
64 Sierra_Leone 29622 A 11 11
65 Sierra_Leone 29623 T 11 11
66 Sierra_Leone 29624 T 11 11
67 Sierra_Leone 29625 C 11 11
68 Sierra_Leone 29626 T 11 11
69 Sierra_Leone 29627 C 11 11
70 Sierra_Leone 29628 G 11 11
71 Sierra_Leone 29629 T 11 11
72 Sierra_Leone 29630 A 11 11
73 Sierra_Leone 29631 A 11 11
74 Sierra_Leone 29632 C 11 11
75 Sierra_Leone 29633 T 11 11
76 Sierra_Leone 29634 A 11 11
77 Sierra_Leone 29635 C 11 11
78 Sierra_Leone 29636 A 11 11
79 Sierra_Leone 29637 T 11 11
80 Sierra_Leone 29638 A 11 11
81 Sierra_Leone 29639 G 11 11
82 Sierra_Leone 29640 C 11 11
83 Sierra_Leone 29641 A 11 11
84 Sierra_Leone 29642 C 11 11
85 Sierra_Leone 29643 A 11 11
86 Sierra_Leone 29644 A 11 11
87 Sierra_Leone 29645 G 11 11
88 Sierra_Leone 29646 T 11 11
89 Sierra_Leone 29647 A 11 11
90 Sierra_Leone 29648 G 11 11
91 Sierra_Leone 29649 A 11 11
92 Sierra_Leone 29650 T 11 11
93 Sierra_Leone 29651 G 11 11
94 Sierra_Leone 29652 T 11 11
95 Sierra_Leone 29653 A 11 11
96 Sierra_Leone 29654 G 11 11
97 Sierra_Leone 29655 T 11 11
98 Sierra_Leone 29656 T 11 11
99 Sierra_Leone 29657 A 11 11
100 Sierra_Leone 29658 A 11 11
101 Sierra_Leone 29659 C 11 11
102 Sierra_Leone 29660 T 11 11
103 Sierra_Leone 29661 T 11 11
104 Sierra_Leone 29662 T 11 11
105 Sierra_Leone 29663 A 11 11
106 Sierra_Leone 29664 A 11 11
107 Sierra_Leone 29665 T 11 11
108 Sierra_Leone 29666 C 11 11
109 Sierra_Leone 29667 T 11 11
110 Sierra_Leone 29668 C 11 11
111 Sierra_Leone 29669 A 11 11
112 Sierra_Leone 29670 C 11 11
113 Sierra_Leone 29671 A 11 11
114 Sierra_Leone 29672 T 11 11
115 Sierra_Leone 29673 A 11 11
116 Sierra_Leone 29674 G 11 11